Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

51513444 .. 51516306

Gene Structure 2863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0403400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGGAGACAGATGGAAGCACACAGCTCTCCTCGTCGTTGACATGCAGAAAGATTTTATAGATAGGGATGGTCCTATGCTAGTGAAAGGAGGCAAGGCCATAGTCCCAAATGTAATAGATGCAGTTCAAATGGCTAGGCAGCGTGGCATTCTCGTAGTTTGGGTTGTGCGTGAACATGATCCATTAGGGAGAGATGTTGAGCTATTTCGCCGGCATTTGTATTCTGCTGGGAAAGAGGGGCCAACGGTTAAGGGTCAGATAGGTGCTGAACTTGTTGATGGGCTTGTGATTGAAGAAGGGGACTATAAATTAGTCAAGACCCGGTTTAGTGCATTCTTTGCTACACACCTTGATTCCTATCTTAAGAGTAATGGAGTTGACAGTTTGGTTGTCATTGGTGTTCAGACTCCAAACTGCATTAGGCAGACTGTGTTTGATGGTGTAGCTTTGGATTACAAATCTATTACAGTTATTGTTGATGCCACAGCTGCTGCTACAGCTGACGTACATGCTGCCAATATATTTGACATGAAGAACGTTGGAGTTGCAACACCAACCTTTCAAGAATGGTCTGAATCGGGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

195

Amino Acids

21.33

Weight (kDa)

5.71

Isoelectric Point (pI)

20.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Isochorismatase	PF00857	8 - 183	1.1e-37	Isochorismatase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	537
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	1 cut(s)	507
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	128, 293, 563
AluBI	AGCT	5 cut(s)	26, 202, 446, 488, 500
AluI	AGCT	5 cut(s)	26, 202, 446, 488, 500
AlwI	GGATC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	491
AoxI	GGCC	2 cut(s)	96, 239
ApeKI	GCWGC	4 cut(s)	139, 488, 491, 512
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	2 cut(s)	71, 239
AsuC2I	CCSGG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	71
BbvI	GCAGC	4 cut(s)	151, 475, 478, 499
BccI	CCATC	4 cut(s)	6, 62, 272, 431
BcnI	CCSGG	1 cut(s)	322
BfaI	CTAG	2 cut(s)	80, 135
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	140, 489, 492, 513
BlsI	GCNGC	4 cut(s)	141, 490, 493, 514
Bme1390I	CCNGG	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	2 cut(s)	71, 239
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	322
BmsI	GCATC	2 cut(s)	109, 469
BpuMI	CCSGG	1 cut(s)	322
BsaBI	GATNNNNATC	1 cut(s)	357
Bse118I	RCCGGY	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	357
BseGI	GGATG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	357
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	151, 475, 478, 499
BseYI	CCCAGC	1 cut(s)	227
BshFI	GGCC	2 cut(s)	98, 241
BsiSI	CCGG	2 cut(s)	211, 322
BslFI	GGGAC	2 cut(s)	89, 314
BsmFI	GGGAC	2 cut(s)	89, 314
BsmI	GAATGC	2 cut(s)	147, 332
BsnI	GGCC	2 cut(s)	98, 241
Bsp143I	GATC	1 cut(s)	178
BspANI	GGCC	2 cut(s)	98, 241
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	1 cut(s)	173
BspTI	CTTAAG	1 cut(s)	362
BsrFI	RCCGGY	1 cut(s)	210
BssAI	RCCGGY	1 cut(s)	210
BssMI	GATC	1 cut(s)	178
Bst4CI	ACNGT	4 cut(s)	247, 383, 430, 469
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	212
BstF5I	GGATG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	1 cut(s)	181
BstMBI	GATC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
BstNSI	RCATGY	2 cut(s)	46, 512
BstSCI	CCNGG	1 cut(s)	320
BstSFI	CTRYAG	1 cut(s)	495
BstV1I	GCAGC	4 cut(s)	151, 475, 478, 499
BsuRI	GGCC	2 cut(s)	98, 241
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	210
Cfr13I	GGNCC	2 cut(s)	71, 239
Csp6I	GTAC	1 cut(s)	506
CviAII	CATG	4 cut(s)	43, 176, 509, 529
CviJI	RGCY	9 cut(s)	26, 98, 134, 202, 241, 283, 446, 488, 500
CviKI_1	RGCY	9 cut(s)	26, 98, 134, 202, 241, 283, 446, 488, 500
CviQI	GTAC	1 cut(s)	506
DpnI	GATC	1 cut(s)	180
DpnII	GATC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	71
FaeI	CATG	4 cut(s)	46, 179, 512, 532
FaiI	YATR	9 cut(s)	44, 59, 77, 101, 177, 306, 510, 521, 530
FaqI	GGGAC	2 cut(s)	89, 314
FatI	CATG	4 cut(s)	42, 175, 508, 528
Fnu4HI	GCNGC	4 cut(s)	140, 489, 492, 513
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	4 cut(s)	140, 489, 492, 513
FspBI	CTAG	2 cut(s)	80, 135
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	4 cut(s)	140, 489, 492, 513
GsaI	CCCAGC	1 cut(s)	231
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	2 cut(s)	98, 241
HapII	CCGG	2 cut(s)	211, 322
HhaI	GCGC	1 cut(s)	584
Hin1II	CATG	4 cut(s)	46, 179, 512, 532
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	2 cut(s)	40, 379
HindII	GTYRAC	2 cut(s)	40, 379
HinfI	GANTC	3 cut(s)	353, 406, 575
HpaII	CCGG	2 cut(s)	211, 322
Hpy166II	GTNNAC	3 cut(s)	40, 173, 379
Hpy188I	TCNGA	3 cut(s)	258, 405, 574
Hpy188III	TCNNGA	2 cut(s)	316, 563
Hpy8I	GTNNAC	3 cut(s)	40, 173, 379
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	1 cut(s)	290
HpyCH4III	ACNGT	4 cut(s)	247, 383, 430, 469
HpyCH4IV	ACGT	2 cut(s)	504, 537
HpyCH4V	TGCA	5 cut(s)	46, 122, 332, 417, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
HpySE526I	ACGT	2 cut(s)	504, 537
Hsp92II	CATG	4 cut(s)	46, 179, 512, 532
HspAI	GCGC	1 cut(s)	582
KroI	GCCGGC	1 cut(s)	210
KroNI	GCCGGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	178
LpnPI	CCDG	3 cut(s)	213, 224, 335
Lsp1109I	GCAGC	4 cut(s)	151, 475, 478, 499
LweI	GCATC	2 cut(s)	109, 469
MaeI	CTAG	2 cut(s)	80, 135
MaeII	ACGT	2 cut(s)	504, 537
MalI	GATC	1 cut(s)	180
MboI	GATC	1 cut(s)	178
MboII	GAAGA	2 cut(s)	305, 544
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	3 cut(s)	41, 83, 229
MroNI	GCCGGC	1 cut(s)	210
MseI	TTAA	2 cut(s)	249, 363
MspA1I	CMGCKG	2 cut(s)	488, 500
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	2 cut(s)	211, 322
MspR9I	CCNGG	1 cut(s)	322
Mva1269I	GAATGC	2 cut(s)	147, 332
MwoI	GCNNNNNNNGC	3 cut(s)	338, 488, 497
NaeI	GCCGGC	1 cut(s)	212
NciI	CCSGG	1 cut(s)	322
NdeII	GATC	1 cut(s)	178
NgoMIV	GCCGGC	1 cut(s)	210
NlaIII	CATG	4 cut(s)	46, 179, 512, 532
NlaIV	GGNNCC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	46, 512
PctI	GAATGC	2 cut(s)	147, 332
PdiI	GCCGGC	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	353, 575
PkrI	GCNGC	4 cut(s)	141, 490, 493, 514
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	240
PspPI	GGNCC	2 cut(s)	71, 239
PstNI	CAGNNNCTG	1 cut(s)	491
PvuII	CAGCTG	2 cut(s)	488, 500
RsaI	GTAC	1 cut(s)	507
RsaNI	GTAC	1 cut(s)	506
SaqAI	TTAA	2 cut(s)	249, 363
SatI	GCNGC	4 cut(s)	140, 489, 492, 513
Sau3AI	GATC	1 cut(s)	178
Sau96I	GGNCC	2 cut(s)	71, 239
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	109, 469
SfcI	CTRYAG	1 cut(s)	495
SinI	GGWCC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	308
SspMI	CTAG	2 cut(s)	80, 135
StyD4I	CCNGG	1 cut(s)	320
TaaI	ACNGT	4 cut(s)	247, 383, 430, 469
TaiI	ACGT	2 cut(s)	507, 540
TasI	AATT	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	353, 575
Tru1I	TTAA	2 cut(s)	249, 363
Tru9I	TTAA	2 cut(s)	249, 363
TseI	GCWGC	4 cut(s)	139, 488, 491, 512
TspDTI	ATGAA	1 cut(s)	545
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	2 cut(s)	46, 512
XspI	CTAG	2 cut(s)	80, 135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.