Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Forward (+)

69937378 .. 69942194

Gene Structure 4817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG483500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGAGAAATCATGCATCAAGCGCCTACAGAAGGAATATAGAGCACTGTGTAAGGAACCAGTTTCTCATGTTGTGGCCCGTCCTTCCCCAAATGACATTCTCGAATGGCATTACGTTTTGGAGGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAGATCAAGTTTCCTCCAGAGTATCCCTATAAACCACCAGGAATCAGCATGACTACTCCCAATGGACGATTCATGACTCAGAAGAAAATTTGTTTGTCTATGAGCGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCCGTGTCAAGCATACTTACAGGGCTTCTTTCATTTATGATGGACAACAGTCCTACAACTGGCAGTGTGAACACTACTGTAGCTGAGAAGCAACGTTTGGCAAAGACTTCTCTTGCTTTTAACGCTAAGAATGTCACATTTCGCAAGATGTTCCCAGAGTATGTGGAGAAGTATAACCAGCAGCAGCAGCAGCTTTCTGAGCAGCTGAATCAAGAGCAGGTGGCCTCTGAATCATCTCAAGAAAATTCCAAGCCCTTGTTGGAAAAGGTCGACGATTCCACGGCAGGAGGTATGAAAACAGTAGGTGCCCTAAAGGACATGAGGAAAAACAAAAAGCAGTCATTCCCAACTTGGATGATGTTATTGCTCATTTCTATCTTTGGCGTTGTAATGGCTCTGCCTCTACTTCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

240

Amino Acids

27.17

Weight (kDa)

9.1

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 134	1.9e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	140, 514
Acc36I	ACCTGC	2 cut(s)	140, 514
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	576
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	255, 550
AfiI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
AgsI	TTSAA	1 cut(s)	716
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 386, 418
AluBI	AGCT	3 cut(s)	389, 499, 511
AluI	AGCT	3 cut(s)	389, 499, 511
Alw21I	GWGCWC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	78, 528
ApeKI	GCWGC	5 cut(s)	487, 490, 493, 496, 508
ApoI	RAATTY	2 cut(s)	255, 550
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	79, 306
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	611
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	5 cut(s)	499, 502, 505, 508, 520
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	201
BfmI	CTRYAG	2 cut(s)	29, 384
BfoI	RGCGCY	1 cut(s)	28
BfuAI	ACCTGC	2 cut(s)	140, 514
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	5 cut(s)	488, 491, 494, 497, 509
BlsI	GCNGC	5 cut(s)	489, 492, 495, 498, 510
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	79, 306
BmiI	GGNNCC	2 cut(s)	60, 613
BmrFI	CCNGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	27
BoxI	GACNNNNGTC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 149, 365
Bse1I	ACTGG	2 cut(s)	62, 370
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	280, 666
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
BseMII	CTCAG	3 cut(s)	260, 381, 495
BseNI	ACTGG	2 cut(s)	62, 370
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	5 cut(s)	499, 502, 505, 508, 520
BshFI	GGCC	2 cut(s)	80, 530
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	49
BslI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
BsnI	GGCC	2 cut(s)	80, 530
Bsp1286I	GDGCHC	2 cut(s)	49, 616
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	2 cut(s)	80, 530
BspCNI	CTCAG	3 cut(s)	259, 382, 496
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	60, 613
BspMI	ACCTGC	2 cut(s)	140, 514
BspT107I	GGYRCC	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	62, 370
BssECI	CCNNGG	1 cut(s)	585
BssMI	GATC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	4 cut(s)	51, 356, 385, 607
BstDEI	CTNAG	4 cut(s)	246, 390, 432, 504
BstDSI	CCRYGG	1 cut(s)	585
BstENI	CCTNNNNNAGG	2 cut(s)	32, 147
BstF5I	GGATG	2 cut(s)	280, 666
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
BstNI	CCWGG	1 cut(s)	207
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	205
BstSFI	CTRYAG	2 cut(s)	29, 384
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	5 cut(s)	499, 502, 505, 508, 520
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	80, 530
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	280, 666
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	47, 376
BveI	ACCTGC	2 cut(s)	140, 514
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	2 cut(s)	79, 306
CviAII	CATG	5 cut(s)	15, 71, 217, 241, 625
CviJI	RGCY	8 cut(s)	80, 331, 389, 499, 511, 530, 559, 701
CviKI_1	RGCY	8 cut(s)	80, 331, 389, 499, 511, 530, 559, 701
DdeI	CTNAG	4 cut(s)	246, 390, 432, 504
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	2 cut(s)	32, 147
EcoRII	CCWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	20
FaeI	CATG	5 cut(s)	18, 74, 220, 244, 628
FatI	CATG	5 cut(s)	14, 70, 216, 240, 624
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	5 cut(s)	488, 491, 494, 497, 509
FokI	GGATG	2 cut(s)	267, 673
Fsp4HI	GCNGC	5 cut(s)	488, 491, 494, 497, 509
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	5 cut(s)	488, 491, 494, 497, 509
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	80, 530
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	5 cut(s)	18, 74, 220, 244, 628
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	7 cut(s)	210, 237, 244, 295, 514, 536, 581
Hpy166II	GTNNAC	2 cut(s)	376, 577
Hpy188I	TCNGA	3 cut(s)	249, 505, 535
Hpy188III	TCNNGA	6 cut(s)	104, 185, 241, 284, 518, 545
Hpy8I	GTNNAC	2 cut(s)	376, 577
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	28, 96, 128
HpyCH4III	ACNGT	4 cut(s)	51, 356, 385, 607
HpyCH4IV	ACGT	2 cut(s)	117, 400
HpyCH4V	TGCA	2 cut(s)	18, 149
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
HpyF3I	CTNAG	4 cut(s)	246, 390, 432, 504
HpySE526I	ACGT	2 cut(s)	117, 400
Hsp92II	CATG	5 cut(s)	18, 74, 220, 244, 628
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	5 cut(s)	499, 502, 505, 508, 520
LweI	GCATC	1 cut(s)	27
MaeII	ACGT	2 cut(s)	117, 400
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	1 cut(s)	262
MhlI	GDGCHC	2 cut(s)	49, 616
MluCI	AATT	2 cut(s)	255, 550
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	272, 546
MnlI	CCTC	6 cut(s)	118, 192, 541, 587, 621, 717
Mph1103I	ATGCAT	1 cut(s)	20
MseI	TTAA	2 cut(s)	426, 721
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	5 cut(s)	18, 74, 220, 244, 628
NlaIV	GGNNCC	2 cut(s)	60, 613
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	20
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	2 cut(s)	140, 514
PfeI	GAWTC	6 cut(s)	210, 237, 295, 514, 536, 581
PkrI	GCNGC	5 cut(s)	489, 492, 495, 498, 510
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	60, 613
PspPI	GGNCC	2 cut(s)	79, 306
PvuII	CAGCTG	1 cut(s)	511
SalI	GTCGAC	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	426, 721
SatI	GCNGC	5 cut(s)	488, 491, 494, 497, 509
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	79, 306
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	2 cut(s)	49, 616
SfaNI	GCATC	1 cut(s)	27
SfcI	CTRYAG	2 cut(s)	29, 384
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	255, 550
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	4 cut(s)	51, 356, 385, 607
TaiI	ACGT	2 cut(s)	120, 403
TaqI	TCGA	2 cut(s)	105, 576
TasI	AATT	2 cut(s)	255, 550
TfiI	GAWTC	6 cut(s)	210, 237, 295, 514, 536, 581
Tru1I	TTAA	2 cut(s)	426, 721
Tru9I	TTAA	2 cut(s)	426, 721
TscAI	CASTG	2 cut(s)	54, 376
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	5 cut(s)	487, 490, 493, 496, 508
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	4 cut(s)	229, 269, 327, 614
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	54, 376
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	2 cut(s)	32, 147
XapI	RAATTY	2 cut(s)	255, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	576
Zsp2I	ATGCAT	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.