Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

28309569 .. 28313946

Gene Structure 4378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGCAGAGAAGTCATGCGTCAAGCGCTTACAGAAGGAATATAGAGCACTGTGTAAGGAACCGGTTTCTCATGTTGTGGCCCGTCCTTCCCCAAATGACATTCTCGAGTGGCATTACGTCTTGGAGGGAAGCGAAGGAACACCTTTTGCAGGTGGATATTACTATGGGAAGATCAAGTTTCCTCCAGAGTATCCCTATAAACCACCAGGAATCAGCATGACTACTCCCAATGGACGATTTATGACTCAGAAGAAAATTTGTTTGTCTATGAGTGATTTTCATCCTGAAAGTTGGAATCCGATGTGGTCCGTGTCAAGCATACTTACAGGGCTTCTTTCATTTATGATGGACAACAGTCCTACAACTGGCAGTGTGAACACTACTGTAGCTGAGAAGCAACGGTTGGCAAAGACTTCTCTTGCTTTTAACGCCAAGAATGTCACATTTCGCAAGATGTTTCCGGAGTATGTGGAGAAATATAACCAGCAGCAACAGCAGCTTTCTGAGCAGCTGAATCAAGAGCAGGTTGCACCTGAATCGTCTCAAGAAAATTCCAAGCCCTTGTTGGAAAAGGTTGACGGTTCTACGGCAGGAGGTATGAAAACAGTAGGTGCCCTAAAGGACACGAGGAGGATTAAAAAGCAGTCGTTCCCTACCTGGATGATGTTACTGCTCATTTCTATCTTTGGTGTTGTAATGGCTCTGCCTCTACTTCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

241

Amino Acids

27.1

Weight (kDa)

9.22

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 134	1.9e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	2 cut(s)	140, 514
AccB1I	GGYRCC	1 cut(s)	611
AccIII	TCCGGA	1 cut(s)	460
AcsI	RAATTY	2 cut(s)	255, 550
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	149, 365
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	716
AjnI	CCWGG	2 cut(s)	205, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	3 cut(s)	389, 499, 511
AluI	AGCT	3 cut(s)	389, 499, 511
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	546
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	460
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	3 cut(s)	487, 496, 508
ApoI	RAATTY	2 cut(s)	255, 550
AsiGI	ACCGGT	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	2 cut(s)	79, 306
AvaI	CYCGRG	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	306
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	1 cut(s)	611
BauI	CACGAG	1 cut(s)	625
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	3 cut(s)	499, 508, 520
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	603
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BciT130I	CCWGG	2 cut(s)	207, 658
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	28
BfuAI	ACCTGC	2 cut(s)	140, 514
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	488, 497, 509
BlsI	GCNGC	3 cut(s)	489, 498, 510
Bme1390I	CCNGG	2 cut(s)	207, 658
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	104
BmgT120I	GGNCC	2 cut(s)	79, 306
BmiI	GGNNCC	2 cut(s)	60, 613
BmrFI	CCNGG	2 cut(s)	207, 658
BoxI	GACNNNNGTC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	279
BsaWI	WCCGGW	2 cut(s)	61, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 365
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	370
Bse8I	GATNNNNATC	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	2 cut(s)	207, 658
BseGI	GGATG	2 cut(s)	280, 666
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	149, 365
BseMII	CTCAG	3 cut(s)	260, 381, 495
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	643
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	499, 508, 520
BshFI	GGCC	1 cut(s)	80
BshNI	GGYRCC	1 cut(s)	611
BshTI	ACCGGT	1 cut(s)	61
BsiHKAI	GWGCWC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	62, 461
BslI	CCNNNNNNNGG	2 cut(s)	149, 365
BsmAI	GTCTC	1 cut(s)	546
BsmBI	CGTCTC	1 cut(s)	546
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	49, 616
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	3 cut(s)	259, 382, 496
BspEI	TCCGGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	60, 613
BspMI	ACCTGC	2 cut(s)	140, 514
BspT107I	GGYRCC	1 cut(s)	611
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	370
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	1 cut(s)	171
BssSI	CACGAG	1 cut(s)	625
Bst2BI	CACGAG	1 cut(s)	625
Bst2UI	CCWGG	2 cut(s)	207, 658
Bst4CI	ACNGT	6 cut(s)	51, 356, 385, 402, 581, 607
BstDEI	CTNAG	3 cut(s)	246, 390, 504
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	280, 666
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
BstNI	CCWGG	2 cut(s)	207, 658
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	205, 656
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	499, 508, 520
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	280, 666
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	47, 376
BveI	ACCTGC	2 cut(s)	140, 514
CfoI	GCGC	1 cut(s)	27
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	2 cut(s)	79, 306
CseI	GACGC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	61
CviAII	CATG	3 cut(s)	15, 71, 217
CviJI	RGCY	7 cut(s)	80, 331, 389, 499, 511, 559, 701
CviKI_1	RGCY	7 cut(s)	80, 331, 389, 499, 511, 559, 701
DdeI	CTNAG	3 cut(s)	246, 390, 504
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	306
Eco47III	AGCGCT	1 cut(s)	26
Eco88I	CYCGRG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	2 cut(s)	205, 656
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	3 cut(s)	18, 74, 220
FatI	CATG	3 cut(s)	14, 70, 216
Fnu4HI	GCNGC	3 cut(s)	488, 497, 509
FokI	GGATG	2 cut(s)	267, 673
Fsp4HI	GCNGC	3 cut(s)	488, 497, 509
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	3 cut(s)	488, 497, 509
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	62, 461
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	18, 74, 220
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	5 cut(s)	210, 244, 295, 514, 536
HpaII	CCGG	2 cut(s)	62, 461
Hpy166II	GTNNAC	2 cut(s)	376, 577
Hpy188I	TCNGA	3 cut(s)	249, 300, 505
Hpy188III	TCNNGA	6 cut(s)	104, 185, 284, 461, 518, 545
Hpy8I	GTNNAC	2 cut(s)	376, 577
HpyAV	CCTTC	3 cut(s)	28, 96, 128
HpyCH4III	ACNGT	6 cut(s)	51, 356, 385, 402, 581, 607
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	2 cut(s)	149, 530
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
HpyF3I	CTNAG	3 cut(s)	246, 390, 504
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	18, 74, 220
HspAI	GCGC	1 cut(s)	25
Kpn2I	TCCGGA	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	3 cut(s)	499, 508, 520
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	2 cut(s)	439, 666
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	2 cut(s)	181, 262
MhlI	GDGCHC	2 cut(s)	49, 616
MluCI	AATT	2 cut(s)	255, 550
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	272, 546
MnlI	CCTC	6 cut(s)	118, 192, 587, 621, 624, 717
MroI	TCCGGA	1 cut(s)	460
MseI	TTAA	3 cut(s)	426, 636, 721
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	2 cut(s)	62, 461
MspR9I	CCNGG	2 cut(s)	207, 658
MvaI	CCWGG	2 cut(s)	207, 658
MwoI	GCNNNNNNNGC	5 cut(s)	24, 428, 493, 496, 505
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	3 cut(s)	18, 74, 220
NlaIV	GGNNCC	2 cut(s)	60, 613
NmuCI	GTSAC	1 cut(s)	439
PaeR7I	CTCGAG	1 cut(s)	104
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	4 cut(s)	210, 295, 514, 536
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	489, 498, 510
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	205, 656
PspGI	CCWGG	2 cut(s)	205, 656
PspN4I	GGNNCC	2 cut(s)	60, 613
PspPI	GGNCC	2 cut(s)	79, 306
PvuII	CAGCTG	1 cut(s)	511
SaqAI	TTAA	3 cut(s)	426, 636, 721
SatI	GCNGC	3 cut(s)	488, 497, 509
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	79, 306
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	207, 658
SduI	GDGCHC	2 cut(s)	49, 616
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	306
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	104, 543
SmoI	CTYRAG	2 cut(s)	104, 543
Sse9I	AATT	2 cut(s)	255, 550
StyD4I	CCNGG	2 cut(s)	205, 656
TaaI	ACNGT	6 cut(s)	51, 356, 385, 402, 581, 607
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	105
TasI	AATT	2 cut(s)	255, 550
TfiI	GAWTC	4 cut(s)	210, 295, 514, 536
Tru1I	TTAA	3 cut(s)	426, 636, 721
Tru9I	TTAA	3 cut(s)	426, 636, 721
TscAI	CASTG	2 cut(s)	54, 376
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	487, 496, 508
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	269, 327, 614
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	54, 376
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	255, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XhoI	CTCGAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.