Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Forward (+)

12489376 .. 12492102

Gene Structure 2727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAGAGAAATCATGTATCAAGCGCCTCCAGAAAGAATATAGAGCACTCTGCAAAGAACCAGTTTCTCATATCGTGGCTCGTCCTCACCCAAATGATATTCTTGAATGGCACTACGTTTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAGATCAAGTTTCCTCCAGAGTACCCATTTAAACCGCCAGGAATCAGCATGACTACCCCAAATGGAAGATTCATGACTCAAAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCCGTGTCAAGCATACTCACGGGGCTTCTTTCATTTATGATGGACACCAGTCCTACTACTGGCAGTGTGAACACTACTGTTGCTGAGAAGAAACGTCTGGCAAAAGCTTCTCTTGCATTTAACTCTAAGAATGTAACATTCCAGAAAATCTTTCCCGAGTATGTGGAGAAGTATAACCAGCAGCAGCAGCAGCTTACTACAGAGCAGGTGTCGTCTGATCCATCTCAAGAAAATTCGAGGCCCTTGTTGAAGAAGGTTGATGATTCAACAGGAGGTATGAAAAGAGTGGATGCCTTAAAGGAGGCGGGGAATAAGAAAAAGCAGTCAGTCCCAACCTGGATGATGGTTTTGCTGATTTCGGTCTTTGGCGTTGTAATGGCGCTGCCGCTACTTCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

236

Amino Acids

26.5

Weight (kDa)

9.3

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 132	9.6e-20	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	140, 502
Acc36I	ACCTGC	2 cut(s)	140, 502
AciI	CCGC	3 cut(s)	203, 611, 692
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	2 cut(s)	255, 538
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	149, 365
AgsI	TTSAA	4 cut(s)	107, 556, 573, 701
AjnI	CCWGG	2 cut(s)	205, 641
AluBI	AGCT	2 cut(s)	413, 499
AluI	AGCT	2 cut(s)	413, 499
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	518
Ama87I	CYCGRG	1 cut(s)	461
AoxI	GGCC	1 cut(s)	545
ApeKI	GCWGC	5 cut(s)	487, 490, 493, 496, 688
ApoI	RAATTY	2 cut(s)	255, 538
AspLEI	GCGC	2 cut(s)	27, 688
AspS9I	GGNCC	2 cut(s)	306, 546
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	5 cut(s)	499, 502, 505, 508, 675
BccI	CCATC	3 cut(s)	340, 535, 643
BciT130I	CCWGG	2 cut(s)	207, 643
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	2 cut(s)	28, 689
BfuAI	ACCTGC	2 cut(s)	140, 502
BisI	GCNGC	6 cut(s)	488, 491, 494, 497, 689, 692
BlsI	GCNGC	6 cut(s)	489, 492, 495, 498, 690, 693
Bme1390I	CCNGG	2 cut(s)	207, 643
Bme18I	GGWCC	1 cut(s)	306
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	306, 546
BmrFI	CCNGG	2 cut(s)	207, 643
BmsI	GCATC	1 cut(s)	586
BoxI	GACNNNNGTC	1 cut(s)	354
BpmI	CTGGAG	2 cut(s)	14, 168
BpuEI	CTTGAG	1 cut(s)	516
BsaBI	GATNNNNATC	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 365
Bse1I	ACTGG	3 cut(s)	62, 354, 370
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	2 cut(s)	207, 643
BseGI	GGATG	3 cut(s)	280, 601, 651
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	2 cut(s)	149, 365
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	62, 354, 370
BseXI	GCAGC	5 cut(s)	499, 502, 505, 508, 675
BshFI	GGCC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	149, 365
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	1 cut(s)	547
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	171, 523
BspACI	CCGC	3 cut(s)	203, 611, 692
BspANI	GGCC	1 cut(s)	547
BspCNI	CTCAG	1 cut(s)	382
BspHI	TCATGA	1 cut(s)	240
BspMI	ACCTGC	2 cut(s)	140, 502
BspPI	GGATC	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	62, 354, 370
BssMI	GATC	2 cut(s)	171, 523
Bst2UI	CCWGG	2 cut(s)	207, 643
Bst4CI	ACNGT	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	390, 432
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	280, 601, 651
BstH2I	RGCGCY	2 cut(s)	28, 689
BstHHI	GCGC	2 cut(s)	27, 688
BstKTI	GATC	2 cut(s)	174, 526
BstMBI	GATC	2 cut(s)	171, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 493, 496
BstNI	CCWGG	2 cut(s)	207, 643
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	205, 641
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	5 cut(s)	499, 502, 505, 508, 675
BsuRI	GGCC	1 cut(s)	547
BtsCI	GGATG	3 cut(s)	280, 601, 651
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	2 cut(s)	140, 502
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	2 cut(s)	27, 688
Cfr13I	GGNCC	2 cut(s)	306, 546
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	15, 217, 241
CviJI	RGCY	5 cut(s)	80, 331, 413, 499, 547
CviKI_1	RGCY	5 cut(s)	80, 331, 413, 499, 547
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	390, 432
DpnI	GATC	2 cut(s)	173, 525
DpnII	GATC	2 cut(s)	171, 523
DraI	TTTAAA	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	205, 641
FaeI	CATG	3 cut(s)	18, 220, 244
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	3 cut(s)	14, 216, 240
FauI	CCCGC	1 cut(s)	604
Fnu4HI	GCNGC	6 cut(s)	488, 491, 494, 497, 689, 692
FokI	GGATG	3 cut(s)	267, 608, 658
Fsp4HI	GCNGC	6 cut(s)	488, 491, 494, 497, 689, 692
GlaI	GCGC	2 cut(s)	26, 687
GluI	GCNGC	6 cut(s)	488, 491, 494, 497, 689, 692
GsuI	CTGGAG	2 cut(s)	14, 168
HaeII	RGCGCY	2 cut(s)	28, 689
HaeIII	GGCC	1 cut(s)	547
HhaI	GCGC	2 cut(s)	27, 688
Hin1II	CATG	3 cut(s)	18, 220, 244
Hin6I	GCGC	2 cut(s)	25, 686
HinP1I	GCGC	2 cut(s)	25, 686
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	210, 237, 244, 295, 569
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	1 cut(s)	523
Hpy188III	TCNNGA	8 cut(s)	31, 104, 185, 241, 284, 448, 461, 533
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	128, 553
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	117, 400
HpyCH4V	TGCA	3 cut(s)	54, 149, 422
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 493, 496
HpyF3I	CTNAG	2 cut(s)	390, 432
HpySE526I	ACGT	2 cut(s)	117, 400
Hsp92II	CATG	3 cut(s)	18, 220, 244
HspAI	GCGC	2 cut(s)	25, 686
Kzo9I	GATC	2 cut(s)	171, 523
Lsp1109I	GCAGC	5 cut(s)	499, 502, 505, 508, 675
LweI	GCATC	1 cut(s)	586
MaeII	ACGT	2 cut(s)	117, 400
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	173, 525
MboI	GATC	2 cut(s)	171, 523
MboII	GAAGA	3 cut(s)	246, 406, 568
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	255, 538
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	7 cut(s)	38, 96, 118, 192, 537, 572, 601
MseI	TTAA	4 cut(s)	198, 426, 602, 706
MslI	CAYNNNNRTG	1 cut(s)	93
MspR9I	CCNGG	2 cut(s)	207, 643
MvaI	CCWGG	2 cut(s)	207, 643
MwoI	GCNNNNNNNGC	3 cut(s)	419, 493, 496
NdeII	GATC	2 cut(s)	171, 523
NlaIII	CATG	3 cut(s)	18, 220, 244
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	2 cut(s)	140, 502
PfeI	GAWTC	4 cut(s)	210, 237, 295, 569
PkrI	GCNGC	6 cut(s)	489, 492, 495, 498, 690, 693
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	205, 641
PspGI	CCWGG	2 cut(s)	205, 641
PspPI	GGNCC	2 cut(s)	306, 546
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	198, 426, 602, 706
SatI	GCNGC	6 cut(s)	488, 491, 494, 497, 689, 692
Sau3AI	GATC	2 cut(s)	171, 523
Sau96I	GGNCC	2 cut(s)	306, 546
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	207, 643
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	586
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	306
SmiMI	CAYNNNNRTG	1 cut(s)	93
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	2 cut(s)	255, 538
SsiI	CCGC	3 cut(s)	203, 611, 692
StyD4I	CCNGG	2 cut(s)	205, 641
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	120, 403
TaqI	TCGA	1 cut(s)	542
TaqII	GACCGA	1 cut(s)	655
TasI	AATT	2 cut(s)	255, 538
TauI	GCSGC	1 cut(s)	694
TfiI	GAWTC	4 cut(s)	210, 237, 295, 569
Tru1I	TTAA	4 cut(s)	198, 426, 602, 706
Tru9I	TTAA	4 cut(s)	198, 426, 602, 706
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	5 cut(s)	487, 490, 493, 496, 688
TspDTI	ATGAA	4 cut(s)	229, 269, 327, 599
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	255, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.