Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000538.1

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Forward (+)

289780 .. 295770

Gene Structure 5991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000538.1_g000080.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

atggcagagaaatcatgcatcaagcgcctacagaaggaatatagagcactgtgtaaggaaccagtttctcatgttgtggcccgtccttccccaaatgacattctcgaatggcattacgttttggagggaagcgaaggaacaccttttgcaggtggatattactatggaaagatcaagtttcctccagagtatccctataaaccaccaggaatcagcatgactactcccaatggacgattcatgactcagaagaaaatttgtttgtctatgagcgattttcatcctgaaagttggaatccaatgtggtccgtgtcaagcatacttacagggcttctttcatttatgatggacaacagtcctacaactggcagtgtgaacactactgtagctgagaagcaacgtttggcaaagacttctcttgcttttaacgctaagaatgtcacatttcgcaagatgttcccagagtatgtggagaagtataaccagcagcagcagcagctttctgagcagctgaatcaagagcaggtggcctctgaatcatctcaagaaaattccaagcccttgttggaaaaggtcgacgattccacggcaggaggtatgaaaacagtaggtgccctaaaggacatgaggaaaaacaaaaagcagcaaagtatgcagaaatctcctgttcatccaaaatatgagatggggtttgatggcagcaatcgatttgatcctcagaatgacttctatgagtttttggaagaagcaaaacactatgcattagaatcagactttcagacatcatcaacttcctatccagaagaaactggagaaagaagatcagggcaagagaagaagaagaagaaatcatggaagaaattactatttccatggttgaaaggcgagaaggtgaacaaaactagcacaaaatcagcaaccaaatctcaagtatctgatgcaagacggactaatgtctctggtccggtatttggcaccggcaaggctatggatggcaggctccggcgccccttatccgggcctattaacagtctgttcagaccaacaataagagcagatagtgaggtaccctataagtgtctggacaagtccggcagccctcaagttgttcaaacatatggccctgtttatctagtgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

380

Amino Acids

43.07

Weight (kDa)

9.45

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	140, 514
Acc36I	ACCTGC	2 cut(s)	140, 514
Acc65I	GGTACC	1 cut(s)	1066
AccB1I	GGYRCC	4 cut(s)	611, 974, 1005, 1066
AccI	GTMKAC	1 cut(s)	576
AclI	AACGTT	1 cut(s)	400
AclWI	GGATC	1 cut(s)	707
AcsI	RAATTY	2 cut(s)	255, 550
AcyI	GRCGYC	1 cut(s)	1006
AfaI	GTAC	1 cut(s)	1068
AfiI	CCNNNNNNNGG	6 cut(s)	34, 149, 365, 971, 1016, 1017
AgsI	TTSAA	2 cut(s)	880, 1112
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 386, 418
AluBI	AGCT	3 cut(s)	389, 499, 511
AluI	AGCT	3 cut(s)	389, 499, 511
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	1 cut(s)	961
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	4 cut(s)	78, 528, 1019, 1120
ApeKI	GCWGC	8 cut(s)	487, 490, 493, 496, 508, 643, 699, 1095
ApoI	RAATTY	2 cut(s)	255, 550
Asp700I	GAANNNNTTC	1 cut(s)	725
Asp718I	GGTACC	1 cut(s)	1066
AspLEI	GCGC	2 cut(s)	27, 1008
AspS9I	GGNCC	5 cut(s)	79, 306, 962, 1019, 1121
AsuC2I	CCSGG	1 cut(s)	1018
AsuHPI	GGTGA	1 cut(s)	904
AvaII	GGWCC	2 cut(s)	306, 962
BaeGI	GKGCMC	1 cut(s)	616
BanI	GGYRCC	4 cut(s)	611, 974, 1005, 1066
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	8 cut(s)	499, 502, 505, 508, 520, 655, 711, 1107
BccI	CCATC	4 cut(s)	340, 679, 689, 986
BceAI	ACGGC	1 cut(s)	603
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	1 cut(s)	201
BcnI	CCSGG	1 cut(s)	1018
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	2 cut(s)	903, 1133
BfmI	CTRYAG	2 cut(s)	29, 384
BfoI	RGCGCY	2 cut(s)	28, 1009
BfuAI	ACCTGC	2 cut(s)	140, 514
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	8 cut(s)	488, 491, 494, 497, 509, 644, 700, 1096
BlsI	GCNGC	8 cut(s)	489, 492, 495, 498, 510, 645, 701, 1097
Bme1390I	CCNGG	2 cut(s)	207, 1018
Bme18I	GGWCC	2 cut(s)	306, 962
BmgT120I	GGNCC	5 cut(s)	79, 306, 962, 1019, 1121
BmiI	GGNNCC	6 cut(s)	60, 613, 976, 1001, 1007, 1068
BmrFI	CCNGG	2 cut(s)	207, 1018
BmsI	GCATC	2 cut(s)	27, 928
BoxI	GACNNNNGTC	2 cut(s)	354, 953
BpmI	CTGGAG	2 cut(s)	168, 831
BpuEI	CTTGAG	3 cut(s)	528, 912, 1086
BpuMI	CCSGG	1 cut(s)	1018
Bsa29I	ATCGAT	1 cut(s)	706
BsaBI	GATNNNNATC	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	585, 872
BsaWI	WCCGGW	1 cut(s)	964
Bsc4I	CCNNNNNNNGG	6 cut(s)	34, 149, 365, 971, 1016, 1017
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	3 cut(s)	62, 370, 814
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	706
BseDI	CCNNGG	2 cut(s)	585, 872
BseGI	GGATG	3 cut(s)	280, 670, 997
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	6 cut(s)	34, 149, 365, 971, 1016, 1017
BseMII	CTCAG	4 cut(s)	260, 381, 495, 731
BseNI	ACTGG	3 cut(s)	62, 370, 814
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	8 cut(s)	499, 502, 505, 508, 520, 655, 711, 1107
BshFI	GGCC	4 cut(s)	80, 530, 1021, 1122
BshNI	GGYRCC	4 cut(s)	611, 974, 1005, 1066
BshVI	ATCGAT	1 cut(s)	706
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	5 cut(s)	965, 978, 1003, 1017, 1092
BslI	CCNNNNNNNGG	6 cut(s)	34, 149, 365, 971, 1016, 1017
BsmAI	GTCTC	1 cut(s)	961
BsnI	GGCC	4 cut(s)	80, 530, 1021, 1122
Bsp1286I	GDGCHC	2 cut(s)	49, 616
Bsp143I	GATC	3 cut(s)	171, 712, 821
Bsp19I	CCATGG	1 cut(s)	872
BspANI	GGCC	4 cut(s)	80, 530, 1021, 1122
BspCNI	CTCAG	4 cut(s)	259, 382, 496, 730
BspDI	ATCGAT	1 cut(s)	706
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	6 cut(s)	60, 613, 976, 1001, 1007, 1068
BspMI	ACCTGC	2 cut(s)	140, 514
BspPI	GGATC	1 cut(s)	707
BspT107I	GGYRCC	4 cut(s)	611, 974, 1005, 1066
BsrFI	RCCGGY	1 cut(s)	977
BsrI	ACTGG	3 cut(s)	62, 370, 814
BssAI	RCCGGY	1 cut(s)	977
BssECI	CCNNGG	2 cut(s)	585, 872
BssMI	GATC	3 cut(s)	171, 712, 821
BssNI	GRCGYC	1 cut(s)	1006
BssT1I	CCWWGG	1 cut(s)	872
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	5 cut(s)	51, 356, 385, 607, 1031
BstACI	GRCGYC	1 cut(s)	1006
BstAPI	GCANNNNNTGC	1 cut(s)	652
BstC8I	GCNNGC	1 cut(s)	998
BstDEI	CTNAG	5 cut(s)	246, 390, 432, 504, 717
BstDSI	CCRYGG	2 cut(s)	585, 872
BstENI	CCTNNNNNAGG	2 cut(s)	32, 147
BstF5I	GGATG	3 cut(s)	280, 670, 997
BstH2I	RGCGCY	2 cut(s)	28, 1009
BstHHI	GCGC	2 cut(s)	27, 1008
BstKTI	GATC	3 cut(s)	174, 715, 824
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	3 cut(s)	171, 712, 821
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 428, 493, 496, 505, 652
BstNI	CCWGG	1 cut(s)	207
BstPAI	GACNNNNGTC	2 cut(s)	354, 953
BstSCI	CCNGG	2 cut(s)	205, 1016
BstSFI	CTRYAG	2 cut(s)	29, 384
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	8 cut(s)	499, 502, 505, 508, 520, 655, 711, 1107
Bsu15I	ATCGAT	1 cut(s)	706
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	4 cut(s)	80, 530, 1021, 1122
BsuTUI	ATCGAT	1 cut(s)	706
BtgI	CCRYGG	2 cut(s)	585, 872
BtsCI	GGATG	3 cut(s)	280, 670, 997
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	47, 376
BveI	ACCTGC	2 cut(s)	140, 514
Cac8I	GCNNGC	1 cut(s)	998
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	2 cut(s)	27, 1008
Cfr10I	RCCGGY	1 cut(s)	977
Cfr13I	GGNCC	5 cut(s)	79, 306, 962, 1019, 1121
ClaI	ATCGAT	1 cut(s)	706
Csp6I	GTAC	1 cut(s)	1067
CviAII	CATG	7 cut(s)	15, 71, 217, 241, 625, 852, 873
CviQI	GTAC	1 cut(s)	1067
DdeI	CTNAG	5 cut(s)	246, 390, 432, 504, 717
DinI	GGCGCC	1 cut(s)	1007
DpnI	GATC	3 cut(s)	173, 714, 823
DpnII	GATC	3 cut(s)	171, 712, 821
Eco130I	CCWWGG	1 cut(s)	872
Eco47I	GGWCC	2 cut(s)	306, 962
EcoNI	CCTNNNNNAGG	2 cut(s)	32, 147
EcoRII	CCWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	872
EcoT22I	ATGCAT	2 cut(s)	20, 763
EgeI	GGCGCC	1 cut(s)	1007
EheI	GGCGCC	1 cut(s)	1007
ErhI	CCWWGG	1 cut(s)	872
FaeI	CATG	7 cut(s)	18, 74, 220, 244, 628, 855, 876
FatI	CATG	7 cut(s)	14, 70, 216, 240, 624, 851, 872
FauNDI	CATATG	1 cut(s)	1117
FblI	GTMKAC	1 cut(s)	576
Fnu4HI	GCNGC	8 cut(s)	488, 491, 494, 497, 509, 644, 700, 1096
FokI	GGATG	3 cut(s)	267, 657, 1004
Fsp4HI	GCNGC	8 cut(s)	488, 491, 494, 497, 509, 644, 700, 1096
FspBI	CTAG	2 cut(s)	903, 1133
GlaI	GCGC	2 cut(s)	26, 1007
GluI	GCNGC	8 cut(s)	488, 491, 494, 497, 509, 644, 700, 1096
GsuI	CTGGAG	2 cut(s)	168, 831
HaeII	RGCGCY	2 cut(s)	28, 1009
HaeIII	GGCC	4 cut(s)	80, 530, 1021, 1122
HapII	CCGG	5 cut(s)	965, 978, 1003, 1017, 1092
HhaI	GCGC	2 cut(s)	27, 1008
Hin1I	GRCGYC	1 cut(s)	1006
Hin1II	CATG	7 cut(s)	18, 74, 220, 244, 628, 855, 876
Hin6I	GCGC	2 cut(s)	25, 1006
HinP1I	GCGC	2 cut(s)	25, 1006
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HinfI	GANTC	8 cut(s)	210, 237, 244, 295, 514, 536, 581, 767
HpaII	CCGG	5 cut(s)	965, 978, 1003, 1017, 1092
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	3 cut(s)	376, 577, 895
Hpy188I	TCNGA	8 cut(s)	249, 505, 535, 720, 772, 780, 937, 1040
Hpy188III	TCNNGA	8 cut(s)	104, 185, 241, 284, 518, 545, 800, 1082
Hpy8I	GTNNAC	3 cut(s)	376, 577, 895
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	4 cut(s)	28, 96, 128, 883
HpyCH4III	ACNGT	5 cut(s)	51, 356, 385, 607, 1031
HpyCH4IV	ACGT	2 cut(s)	117, 400
HpyCH4V	TGCA	5 cut(s)	18, 149, 655, 761, 941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 428, 493, 496, 505, 652
HpyF3I	CTNAG	5 cut(s)	246, 390, 432, 504, 717
HpySE526I	ACGT	2 cut(s)	117, 400
Hsp92I	GRCGYC	1 cut(s)	1006
Hsp92II	CATG	7 cut(s)	18, 74, 220, 244, 628, 855, 876
HspAI	GCGC	2 cut(s)	25, 1006
KasI	GGCGCC	1 cut(s)	1005
KpnI	GGTACC	1 cut(s)	1070
Kzo9I	GATC	3 cut(s)	171, 712, 821
LmnI	GCTCC	1 cut(s)	1005
Lsp1109I	GCAGC	8 cut(s)	499, 502, 505, 508, 520, 655, 711, 1107
LweI	GCATC	2 cut(s)	27, 928
MaeI	CTAG	2 cut(s)	903, 1133
MaeII	ACGT	2 cut(s)	117, 400
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	3 cut(s)	173, 714, 823
MboI	GATC	3 cut(s)	171, 712, 821
MboII	GAAGA	9 cut(s)	262, 755, 815, 831, 847, 850, 853, 856, 868
MhlI	GDGCHC	2 cut(s)	49, 616
MluCI	AATT	3 cut(s)	255, 550, 860
Mly113I	GGCGCC	1 cut(s)	1006
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	272, 546
MnlI	CCTC	8 cut(s)	118, 192, 541, 587, 621, 726, 1057, 1110
Mph1103I	ATGCAT	2 cut(s)	20, 763
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	2 cut(s)	426, 1026
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	5 cut(s)	965, 978, 1003, 1017, 1092
MspR9I	CCNGG	2 cut(s)	207, 1018
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	6 cut(s)	24, 428, 493, 496, 505, 652
NarI	GGCGCC	1 cut(s)	1006
NciI	CCSGG	1 cut(s)	1018
NcoI	CCATGG	1 cut(s)	872
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	3 cut(s)	171, 712, 821
NlaIII	CATG	7 cut(s)	18, 74, 220, 244, 628, 855, 876
NlaIV	GGNNCC	6 cut(s)	60, 613, 976, 1001, 1007, 1068
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	2 cut(s)	20, 763
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	2 cut(s)	140, 514
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	7 cut(s)	210, 237, 295, 514, 536, 581, 767
PkrI	GCNGC	8 cut(s)	489, 492, 495, 498, 510, 645, 701, 1097
PleI	GAGTC	1 cut(s)	238
PluTI	GGCGCC	1 cut(s)	1009
PpsI	GAGTC	1 cut(s)	238
PshAI	GACNNNNGTC	2 cut(s)	354, 953
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	6 cut(s)	60, 613, 976, 1001, 1007, 1068
PspPI	GGNCC	5 cut(s)	79, 306, 962, 1019, 1121
PvuII	CAGCTG	1 cut(s)	511
RsaI	GTAC	1 cut(s)	1068
RsaNI	GTAC	1 cut(s)	1067
SalI	GTCGAC	1 cut(s)	575
SaqAI	TTAA	2 cut(s)	426, 1026
SatI	GCNGC	8 cut(s)	488, 491, 494, 497, 509, 644, 700, 1096
Sau3AI	GATC	3 cut(s)	171, 712, 821
Sau96I	GGNCC	5 cut(s)	79, 306, 962, 1019, 1121
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	207, 1018
SduI	GDGCHC	2 cut(s)	49, 616
SfaNI	GCATC	2 cut(s)	27, 928
SfcI	CTRYAG	2 cut(s)	29, 384
SfoI	GGCGCC	1 cut(s)	1007
SinI	GGWCC	2 cut(s)	306, 962
SmlI	CTYRAG	3 cut(s)	543, 927, 1101
SmoI	CTYRAG	3 cut(s)	543, 927, 1101
Sse9I	AATT	3 cut(s)	255, 550, 860
SspDI	GGCGCC	1 cut(s)	1005
SspMI	CTAG	2 cut(s)	903, 1133
StyD4I	CCNGG	2 cut(s)	205, 1016
StyI	CCWWGG	1 cut(s)	872
TaaI	ACNGT	5 cut(s)	51, 356, 385, 607, 1031
TaiI	ACGT	2 cut(s)	120, 403
TaqI	TCGA	3 cut(s)	105, 576, 706
TasI	AATT	3 cut(s)	255, 550, 860
TfiI	GAWTC	7 cut(s)	210, 237, 295, 514, 536, 581, 767
Tru1I	TTAA	2 cut(s)	426, 1026
Tru9I	TTAA	2 cut(s)	426, 1026
TscAI	CASTG	2 cut(s)	54, 376
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	8 cut(s)	487, 490, 493, 496, 508, 643, 699, 1095
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	229, 269, 327, 614, 659
TspGWI	ACGGA	2 cut(s)	298, 961
TspRI	CASTG	2 cut(s)	54, 376
VpaK11BI	GGWCC	2 cut(s)	306, 962
XagI	CCTNNNNNAGG	2 cut(s)	32, 147
XapI	RAATTY	2 cut(s)	255, 550
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	576
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	903, 1133
Zsp2I	ATGCAT	2 cut(s)	20, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.