Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

14559923 .. 14563896

Gene Structure 3974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1172300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGAGAAATCATGTATCAAGCGCCTCCAGAAAGAATATAGAGCACTCTGCAAAGAACCAGTTTCTCATATTGTGGCTCGTCCTCACCCAAACGATATTCTTGAATGGCACTACGTGCTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTACGGAAAGATCAAGTTTCCTCCAGAGTACCCATTTAAACCGCCAGGAATCAGCATGACTACTCCAAATGGAAGATTCATGACTCAGAAGAAAATTTGCTTATCTATGAGTGATTTTCATCCTGAAAGTTGGAATCCAATGTGGTCCGTGTCAAGCATACTCACGGGGCTACTTTCATTCATGATGGACACCAGTCCTACTACCGGCAGTGTGAACACTACTGTTGCTGAGAAGAAACGTCTGGCAAAAGCTTCTCTTGCATTTAACTCTAAGAATGCAACATTCCGGAAAATGTTCCCAGAGTATGTGGAGAAGTATAACCACCAGCAGCAGCAGCTTTCCGAGCAGCTTATTCCAGAGCATGTGTCATCCGATCCATCTCAAGGAAATTTGAGGCCCTTGTTGGAAAAGGTTGATGATTCAACAGGAGGTATGAAAAGAGTAGATGCCGAGGCGGGGAAAAAGAAAAGGCAGTCAGTCCCAACCTGGATGATGGTTTTGCTGATTTCCGTCTTTGGTGTTGTAATGGCGCTGCCTCTACTTCAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

238

Amino Acids

26.76

Weight (kDa)

9.23

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 132	9.8e-20	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	3 cut(s)	5, 203, 617
AclWI	GGATC	1 cut(s)	530
AcsI	RAATTY	2 cut(s)	255, 550
AdeI	CACNNNGTG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	4 cut(s)	149, 365, 545, 618
AgsI	TTSAA	3 cut(s)	107, 585, 707
AjnI	CCWGG	2 cut(s)	205, 647
AluBI	AGCT	3 cut(s)	413, 499, 511
AluI	AGCT	3 cut(s)	413, 499, 511
Alw21I	GWGCWC	1 cut(s)	49
AlwI	GGATC	1 cut(s)	530
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	5 cut(s)	490, 493, 496, 508, 694
ApoI	RAATTY	2 cut(s)	255, 550
Asp700I	GAANNNNTTC	1 cut(s)	455
AspLEI	GCGC	2 cut(s)	27, 694
AspS9I	GGNCC	2 cut(s)	306, 558
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	5 cut(s)	502, 505, 508, 520, 681
BccI	CCATC	3 cut(s)	340, 547, 649
BciT130I	CCWGG	2 cut(s)	207, 649
BfoI	RGCGCY	2 cut(s)	28, 695
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	5 cut(s)	491, 494, 497, 509, 695
BlsI	GCNGC	5 cut(s)	492, 495, 498, 510, 696
Bme1390I	CCNGG	2 cut(s)	207, 649
Bme18I	GGWCC	1 cut(s)	306
BmgT120I	GGNCC	2 cut(s)	306, 558
BmrFI	CCNGG	2 cut(s)	207, 649
BmsI	GCATC	1 cut(s)	598
BoxI	GACNNNNGTC	1 cut(s)	354
BpmI	CTGGAG	3 cut(s)	14, 143, 168
BpuEI	CTTGAG	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	612
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 365, 545, 618
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	2 cut(s)	62, 354
Bse8I	GATNNNNATC	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	2 cut(s)	207, 649
BseDI	CCNNGG	1 cut(s)	612
BseGI	GGATG	3 cut(s)	280, 530, 657
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	149, 365, 545, 618
BseMII	CTCAG	2 cut(s)	260, 381
BseNI	ACTGG	2 cut(s)	62, 354
BseXI	GCAGC	5 cut(s)	502, 505, 508, 520, 681
BshFI	GGCC	1 cut(s)	559
BsiHKAI	GWGCWC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	366, 448
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	4 cut(s)	149, 365, 545, 618
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	171, 535
BspACI	CCGC	3 cut(s)	5, 203, 617
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	259, 382
BspEI	TCCGGA	1 cut(s)	447
BspHI	TCATGA	2 cut(s)	240, 342
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	530
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	62, 354
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	1 cut(s)	612
BssMI	GATC	2 cut(s)	171, 535
Bst2UI	CCWGG	2 cut(s)	207, 649
Bst4CI	ACNGT	1 cut(s)	385
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	246, 390, 432
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	280, 530, 657
BstH2I	RGCGCY	2 cut(s)	28, 695
BstHHI	GCGC	2 cut(s)	27, 694
BstKTI	GATC	2 cut(s)	174, 538
BstMBI	GATC	2 cut(s)	171, 535
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 419, 496, 505
BstNI	CCWGG	2 cut(s)	207, 649
BstNSI	RCATGY	1 cut(s)	527
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	2 cut(s)	205, 647
BstV1I	GCAGC	5 cut(s)	502, 505, 508, 520, 681
BsuRI	GGCC	1 cut(s)	559
BtsCI	GGATG	3 cut(s)	280, 530, 657
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	140
CciI	TCATGA	2 cut(s)	240, 342
CfoI	GCGC	2 cut(s)	27, 694
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	306, 558
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	5 cut(s)	15, 217, 241, 343, 524
CviJI	RGCY	6 cut(s)	80, 331, 413, 499, 511, 559
CviKI_1	RGCY	6 cut(s)	80, 331, 413, 499, 511, 559
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	246, 390, 432
DpnI	GATC	2 cut(s)	173, 537
DpnII	GATC	2 cut(s)	171, 535
DraI	TTTAAA	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	306
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	558
EcoRII	CCWGG	2 cut(s)	205, 647
FaeI	CATG	5 cut(s)	18, 220, 244, 346, 527
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	5 cut(s)	14, 216, 240, 342, 523
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	5 cut(s)	491, 494, 497, 509, 695
FokI	GGATG	3 cut(s)	267, 517, 664
Fsp4HI	GCNGC	5 cut(s)	491, 494, 497, 509, 695
GlaI	GCGC	2 cut(s)	26, 693
GluI	GCNGC	5 cut(s)	491, 494, 497, 509, 695
GsuI	CTGGAG	3 cut(s)	14, 143, 168
HaeII	RGCGCY	2 cut(s)	28, 695
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	2 cut(s)	366, 448
HhaI	GCGC	2 cut(s)	27, 694
Hin1II	CATG	5 cut(s)	18, 220, 244, 346, 527
Hin6I	GCGC	2 cut(s)	25, 692
HinP1I	GCGC	2 cut(s)	25, 692
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	210, 237, 244, 295, 581
HpaII	CCGG	2 cut(s)	366, 448
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	249, 505, 535
Hpy188III	TCNNGA	8 cut(s)	31, 104, 185, 241, 284, 343, 448, 518
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	117, 400
HpyCH4V	TGCA	4 cut(s)	54, 149, 422, 440
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 419, 496, 505
HpyF3I	CTNAG	3 cut(s)	246, 390, 432
HpySE526I	ACGT	2 cut(s)	117, 400
Hsp92II	CATG	5 cut(s)	18, 220, 244, 346, 527
HspAI	GCGC	2 cut(s)	25, 692
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	2 cut(s)	171, 535
Lsp1109I	GCAGC	5 cut(s)	502, 505, 508, 520, 681
LweI	GCATC	1 cut(s)	598
MaeII	ACGT	2 cut(s)	117, 400
MalI	GATC	2 cut(s)	173, 537
MboI	GATC	2 cut(s)	171, 535
MboII	GAAGA	3 cut(s)	246, 262, 406
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	2 cut(s)	255, 550
MlyI	GAGTC	1 cut(s)	238
MmeI	TCCRAC	2 cut(s)	272, 546
MnlI	CCTC	8 cut(s)	38, 96, 118, 192, 549, 584, 607, 708
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	455
MseI	TTAA	3 cut(s)	198, 426, 712
MspI	CCGG	2 cut(s)	366, 448
MspR9I	CCNGG	2 cut(s)	207, 649
Mva1269I	GAATGC	1 cut(s)	442
MvaI	CCWGG	2 cut(s)	207, 649
MwoI	GCNNNNNNNGC	4 cut(s)	118, 419, 496, 505
NdeII	GATC	2 cut(s)	171, 535
NlaIII	CATG	5 cut(s)	18, 220, 244, 346, 527
NmeAIII	GCCGAG	1 cut(s)	637
NspI	RCATGY	1 cut(s)	527
PagI	TCATGA	2 cut(s)	240, 342
PaqCI	CACCTGC	1 cut(s)	140
PctI	GAATGC	1 cut(s)	442
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	4 cut(s)	210, 237, 295, 581
PkrI	GCNGC	5 cut(s)	492, 495, 498, 510, 696
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	2 cut(s)	205, 647
PspGI	CCWGG	2 cut(s)	205, 647
PspPI	GGNCC	2 cut(s)	306, 558
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SaqAI	TTAA	3 cut(s)	198, 426, 712
SatI	GCNGC	5 cut(s)	491, 494, 497, 509, 695
Sau3AI	GATC	2 cut(s)	171, 535
Sau96I	GGNCC	2 cut(s)	306, 558
SchI	GAGTC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	207, 649
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	598
SinI	GGWCC	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
Sse9I	AATT	2 cut(s)	255, 550
SsiI	CCGC	3 cut(s)	5, 203, 617
StyD4I	CCNGG	2 cut(s)	205, 647
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	120, 403
TasI	AATT	2 cut(s)	255, 550
TfiI	GAWTC	4 cut(s)	210, 237, 295, 581
Tru1I	TTAA	3 cut(s)	198, 426, 712
Tru9I	TTAA	3 cut(s)	198, 426, 712
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	5 cut(s)	490, 493, 496, 508, 694
TspDTI	ATGAA	5 cut(s)	229, 269, 327, 331, 611
TspGWI	ACGGA	3 cut(s)	180, 298, 661
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	2 cut(s)	255, 550
XceI	RCATGY	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.