Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

20534058 .. 20537138

Gene Structure 3081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G50430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGCAGAAAAAGCTTGTATAAAGCGTCTTCAAAAAGAATACAGAGCGCTTTGCAAGGAACCAGTCTCGCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTTGAATGGCATTATGTGTTGGAAGGCAGTGAGGGAACGCCTTTTGCAGGTGGATTTTACTATGGAAAGATCAAGTTCCCTCCAGAATATCCTTACAAGCCACCTGGAATCACAATGACCACACCAAATGGTCGATTTGTGACGCAAAAGAAAATCTGCTTGTCTATGAGTGACTTTCATCCAGAAAGCTGGAATCCAATGTGGTCAGTGTCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATAACAGCCCCACAACGGGAAGTGTAAACACTAGTGTAGCCGAGAAACAACGGTTGGCGAAGTCATCTCTTGCTTTCAATTGTAAAAGTGTAACATTCCGGAAACTATTTCCCGAGTATGTCGAGAAGTACAGCCAGCAACAAGTAGCTGAAGAAGAAGCAGCCACTCAACAGACAACAACATCTGAGAATCAGGATTTTCCTCAGAAGGACAATGCGAAAGTCGAATCAGAGAAAAGCGTTGGTCTTAAAAAGGAAAGTATTCAAGAAGTGGGATTGAAAGAGAGGAGAAGGAACAAGAAAGAAGCATTACCGGGTTGGATAGTATTGTTGCTAGTATCGATTGTCGGTGTTGTAATGGCGTTGCCTTTGCTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

243

Amino Acids

27.36

Weight (kDa)

8.9

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 133	1.6e-19	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	447
AcuI	CTGAAG	2 cut(s)	519, 707
AfaI	GTAC	1 cut(s)	479
AfeI	AGCGCT	1 cut(s)	48
AfiI	CCNNNNNNNGG	3 cut(s)	149, 364, 365
AgsI	TTSAA	5 cut(s)	32, 107, 427, 614, 628
AhlI	ACTAGT	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	4 cut(s)	14, 291, 497, 727
AluI	AGCT	4 cut(s)	14, 291, 497, 727
Alw26I	GTCTC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	447
Aor51HI	AGCGCT	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	509
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	663
AvaI	CYCGRG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	70
BcuI	ACTAGT	1 cut(s)	380
BfaI	CTAG	2 cut(s)	381, 683
BfoI	RGCGCY	1 cut(s)	50
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	207, 663
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	207, 663
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 364, 365
Bse1I	ACTGG	1 cut(s)	62
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	689
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	3 cut(s)	149, 364, 365
BseMII	CTCAG	2 cut(s)	525, 566
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	649
BseXI	GCAGC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	689
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	448, 662
BslI	CCNNNNNNNGG	3 cut(s)	149, 364, 365
BsmAI	GTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	461
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	526, 565
BspDI	ATCGAT	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	485
BstDEI	CTNAG	2 cut(s)	534, 552
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	280
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	174
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	1 cut(s)	207
BstNSI	RCATGY	1 cut(s)	74
BstSCI	CCNGG	2 cut(s)	205, 661
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	689
BsuTUI	ATCGAT	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	2 cut(s)	136, 315
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	485
CfoI	GCGC	1 cut(s)	49
ClaI	ATCGAT	1 cut(s)	689
CseI	GACGC	2 cut(s)	14, 253
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	9 cut(s)	14, 202, 291, 357, 389, 483, 497, 512, 727
CviKI_1	RGCY	9 cut(s)	14, 202, 291, 357, 389, 483, 497, 512, 727
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	534, 552
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	48
Eco57I	CTGAAG	2 cut(s)	519, 707
Eco88I	CYCGRG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	74
FaiI	YATR	8 cut(s)	20, 72, 117, 165, 269, 320, 344, 468
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	2 cut(s)	381, 683
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	50
HapII	CCGG	2 cut(s)	448, 662
HgaI	GACGC	2 cut(s)	14, 253
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	74
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	1 cut(s)	12
HinfI	GANTC	4 cut(s)	210, 295, 538, 575
HpaII	CCGG	2 cut(s)	448, 662
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	535, 555, 580
Hpy188III	TCNNGA	8 cut(s)	104, 185, 284, 448, 461, 472, 542, 614
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	96, 119, 550, 633
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	54, 149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	534, 552
Hsp92II	CATG	1 cut(s)	74
HspAI	GCGC	1 cut(s)	47
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	521
MaeI	CTAG	2 cut(s)	381, 683
MaeIII	GTNAC	3 cut(s)	241, 272, 439
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	20, 512, 515
MfeI	CAATTG	1 cut(s)	427
MluCI	AATT	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	102, 647
MnlI	CCTC	4 cut(s)	127, 192, 561, 627
MroI	TCCGGA	1 cut(s)	447
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	1 cut(s)	597
MspA1I	CMGCKG	1 cut(s)	727
MspI	CCGG	2 cut(s)	448, 662
MspR9I	CCNGG	2 cut(s)	207, 663
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	663
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	241, 272
NspI	RCATGY	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	140
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	4 cut(s)	210, 295, 538, 575
PkrI	GCNGC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	205
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	60
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	597
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	171
ScrFI	CCNGG	2 cut(s)	207, 663
SetI	ASST	6 cut(s)	16, 154, 208, 293, 499, 729
SpeI	ACTAGT	1 cut(s)	380
Sse9I	AATT	1 cut(s)	427
SspMI	CTAG	2 cut(s)	381, 683
StyD4I	CCNGG	2 cut(s)	205, 661
TaaI	ACNGT	1 cut(s)	402
TaqI	TCGA	4 cut(s)	235, 471, 573, 689
TasI	AATT	1 cut(s)	427
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	4 cut(s)	210, 295, 538, 575
Tru1I	TTAA	1 cut(s)	597
Tru9I	TTAA	1 cut(s)	597
TscAI	CASTG	2 cut(s)	136, 315
TseFI	GTSAC	2 cut(s)	241, 272
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	241, 272
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	2 cut(s)	136, 315
XagI	CCTNNNNNAGG	1 cut(s)	147
XceI	RCATGY	1 cut(s)	74
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	2 cut(s)	381, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.