Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

2281052 .. 2285334

Gene Structure 4283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G030700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGAGAAAGCATGTGTCAAGCGCCTCCAGAAGGAATATAGAGCACTCTGCAAAGAACCAGTTTCTCATATTGTGGCCCGTCCTTCGCCAAATGATATTCTCGAATGGCACTACGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCAGAATATCCATATAAACCACCAGGAATCAGTATGACTACTCCCAATGGAAGATTCATGACTCAGAAGAAAATTTGTTTGTCTATGAGTGATTTCCATCCTGAAAGTTGGAATCCAATGTGGTCTGTGTCAAGCATACTTACAGGGCTTCTTTCATTTATGATGGACAACAGTCCCACTACCGGCAGTGTGAACACTACTACTGCTGAGAAGCAACGTTTGGCAAAGGCTTCTCTTGCGTTTAACTCTAAAAATCCAACATTCCGGAAAATCTTTCCCGAGTATGTGGAGAAGTATAACCAGCAGCAGCTTTCTGAGCAGCTTATTACAGAGCGGGTGTCATCTGAGCTATCTCAAGAAAATTCCAGGCCCTTGTTGGAAAAGGTTGATGACTCAACAGGAGGTATGAAAAGACTAGATGCTTTAAAGGAGGCGAGGAAAAACAAAAAGCAGTCCTTCCCAACCTGGATGATGTTGTTGCTAATTTCCGTCTTCGGTGTTGTAATGGCGCTGCCTCTACTTCAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

238

Amino Acids

26.91

Weight (kDa)

9.23

Isoelectric Point (pI)

53.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AccBSI	CCGCTC	1 cut(s)	517
AccIII	TCCGGA	1 cut(s)	447
AciI	CCGC	2 cut(s)	5, 517
AclI	AACGTT	1 cut(s)	400
AcsI	RAATTY	2 cut(s)	255, 544
AdeI	CACNNNGTG	1 cut(s)	118
AfiI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	707
AjnI	CCWGG	3 cut(s)	205, 548, 647
AjuI	GAANNNNNNNTTGG	4 cut(s)	221, 253, 386, 418
AluBI	AGCT	3 cut(s)	493, 505, 532
AluI	AGCT	3 cut(s)	493, 505, 532
Alw21I	GWGCWC	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	447
AoxI	GGCC	2 cut(s)	78, 551
ApeKI	GCWGC	4 cut(s)	487, 490, 502, 694
ApoI	RAATTY	2 cut(s)	255, 544
AspLEI	GCGC	2 cut(s)	27, 694
AspS9I	GGNCC	2 cut(s)	79, 552
AvaI	CYCGRG	1 cut(s)	461
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	4 cut(s)	499, 502, 514, 681
BccI	CCATC	2 cut(s)	288, 340
BciT130I	CCWGG	3 cut(s)	207, 550, 649
BfaI	CTAG	1 cut(s)	599
BfoI	RGCGCY	2 cut(s)	28, 695
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	4 cut(s)	488, 491, 503, 695
BlsI	GCNGC	4 cut(s)	489, 492, 504, 696
Bme1390I	CCNGG	3 cut(s)	207, 550, 649
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	2 cut(s)	79, 552
BmrFI	CCNGG	3 cut(s)	207, 550, 649
BmsI	GCATC	1 cut(s)	592
BoxI	GACNNNNGTC	1 cut(s)	354
BpiI	GAAGAC	1 cut(s)	667
BpmI	CTGGAG	2 cut(s)	14, 168
BpuEI	CTTGAG	1 cut(s)	522
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 149, 365
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	279
BseAI	TCCGGA	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	207, 550, 649
BseGI	GGATG	2 cut(s)	280, 657
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
BseMII	CTCAG	4 cut(s)	260, 381, 489, 519
BseNI	ACTGG	1 cut(s)	62
BseXI	GCAGC	4 cut(s)	499, 502, 514, 681
BshFI	GGCC	2 cut(s)	80, 553
BsiHKAI	GWGCWC	1 cut(s)	49
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	2 cut(s)	366, 448
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	34, 149, 365
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	80, 553
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp13I	TCCGGA	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	2 cut(s)	5, 517
BspANI	GGCC	2 cut(s)	80, 553
BspCNI	CTCAG	4 cut(s)	259, 382, 490, 520
BspEI	TCCGGA	1 cut(s)	447
BspHI	TCATGA	1 cut(s)	240
BspMI	ACCTGC	1 cut(s)	140
BsrBI	CCGCTC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	365
BssMI	GATC	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	207, 550, 649
Bst4CI	ACNGT	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	118
BstDEI	CTNAG	4 cut(s)	246, 390, 498, 528
BstENI	CCTNNNNNAGG	2 cut(s)	32, 147
BstF5I	GGATG	2 cut(s)	280, 657
BstH2I	RGCGCY	2 cut(s)	28, 695
BstHHI	GCGC	2 cut(s)	27, 694
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 419, 499
BstNI	CCWGG	3 cut(s)	207, 550, 649
BstNSI	RCATGY	1 cut(s)	18
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	3 cut(s)	205, 548, 647
BstV1I	GCAGC	4 cut(s)	499, 502, 514, 681
BstV2I	GAAGAC	1 cut(s)	667
BsuRI	GGCC	2 cut(s)	80, 553
BtsCI	GGATG	2 cut(s)	280, 657
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	1 cut(s)	376
BveI	ACCTGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	2 cut(s)	27, 694
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	79, 552
CviAII	CATG	2 cut(s)	15, 241
CviJI	RGCY	7 cut(s)	80, 331, 413, 493, 505, 532, 553
CviKI_1	RGCY	7 cut(s)	80, 331, 413, 493, 505, 532, 553
DdeI	CTNAG	4 cut(s)	246, 390, 498, 528
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
DraI	TTTAAA	1 cut(s)	609
DraIII	CACNNNGTG	1 cut(s)	118
EciI	GGCGGA	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	461
EcoNI	CCTNNNNNAGG	2 cut(s)	32, 147
EcoO109I	RGGNCCY	1 cut(s)	552
EcoRII	CCWGG	3 cut(s)	205, 548, 647
FaeI	CATG	2 cut(s)	18, 244
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	14, 240
FauI	CCCGC	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	488, 491, 503, 695
FokI	GGATG	2 cut(s)	267, 664
Fsp4HI	GCNGC	4 cut(s)	488, 491, 503, 695
FspBI	CTAG	1 cut(s)	599
GlaI	GCGC	2 cut(s)	26, 693
GluI	GCNGC	4 cut(s)	488, 491, 503, 695
GsuI	CTGGAG	2 cut(s)	14, 168
HaeII	RGCGCY	2 cut(s)	28, 695
HaeIII	GGCC	2 cut(s)	80, 553
HapII	CCGG	2 cut(s)	366, 448
HhaI	GCGC	2 cut(s)	27, 694
Hin1II	CATG	2 cut(s)	18, 244
Hin6I	GCGC	2 cut(s)	25, 692
HinP1I	GCGC	2 cut(s)	25, 692
HinfI	GANTC	5 cut(s)	210, 237, 244, 295, 575
HpaII	CCGG	2 cut(s)	366, 448
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	249, 499, 529
Hpy188III	TCNNGA	8 cut(s)	31, 104, 185, 241, 284, 448, 461, 539
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	28, 96, 128, 649
HpyCH4III	ACNGT	1 cut(s)	356
HpyCH4IV	ACGT	2 cut(s)	117, 400
HpyCH4V	TGCA	2 cut(s)	54, 149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 419, 499
HpyF3I	CTNAG	4 cut(s)	246, 390, 498, 528
HpySE526I	ACGT	2 cut(s)	117, 400
Hsp92II	CATG	2 cut(s)	18, 244
HspAI	GCGC	2 cut(s)	25, 692
Kpn2I	TCCGGA	1 cut(s)	447
Kzo9I	GATC	1 cut(s)	171
Lsp1109I	GCAGC	4 cut(s)	499, 502, 514, 681
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	2 cut(s)	117, 400
MalI	GATC	1 cut(s)	173
MbiI	CCGCTC	1 cut(s)	517
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	246, 262, 667
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	255, 544, 666
MlyI	GAGTC	2 cut(s)	238, 569
MmeI	TCCRAC	4 cut(s)	102, 272, 464, 540
MnlI	CCTC	7 cut(s)	38, 118, 192, 578, 607, 612, 708
MroI	TCCGGA	1 cut(s)	447
MseI	TTAA	2 cut(s)	426, 608
MspI	CCGG	2 cut(s)	366, 448
MspR9I	CCNGG	3 cut(s)	207, 550, 649
MvaI	CCWGG	3 cut(s)	207, 550, 649
MwoI	GCNNNNNNNGC	3 cut(s)	11, 419, 499
NdeII	GATC	1 cut(s)	171
NlaIII	CATG	2 cut(s)	18, 244
NspI	RCATGY	1 cut(s)	18
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	140
PfeI	GAWTC	3 cut(s)	210, 237, 295
PkrI	GCNGC	4 cut(s)	489, 492, 504, 696
PleI	GAGTC	2 cut(s)	238, 569
PpsI	GAGTC	2 cut(s)	238, 569
Ppu21I	YACGTR	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	354
Psp1406I	AACGTT	1 cut(s)	400
Psp6I	CCWGG	3 cut(s)	205, 548, 647
PspGI	CCWGG	3 cut(s)	205, 548, 647
PspPI	GGNCC	2 cut(s)	79, 552
SaqAI	TTAA	2 cut(s)	426, 608
SatI	GCNGC	4 cut(s)	488, 491, 503, 695
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	2 cut(s)	79, 552
SchI	GAGTC	2 cut(s)	238, 569
ScrFI	CCNGG	3 cut(s)	207, 550, 649
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
Sse9I	AATT	3 cut(s)	255, 544, 666
SsiI	CCGC	2 cut(s)	5, 517
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	3 cut(s)	205, 548, 647
TaaI	ACNGT	1 cut(s)	356
TaiI	ACGT	2 cut(s)	120, 403
TaqI	TCGA	1 cut(s)	105
TasI	AATT	3 cut(s)	255, 544, 666
TfiI	GAWTC	3 cut(s)	210, 237, 295
Tru1I	TTAA	2 cut(s)	426, 608
Tru9I	TTAA	2 cut(s)	426, 608
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	4 cut(s)	487, 490, 502, 694
TspDTI	ATGAA	3 cut(s)	229, 327, 605
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	1 cut(s)	376
XagI	CCTNNNNNAGG	2 cut(s)	32, 147
XapI	RAATTY	2 cut(s)	255, 544
XceI	RCATGY	1 cut(s)	18
XcmI	CCANNNNNNNNNTGG	1 cut(s)	556
XspI	CTAG	1 cut(s)	599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.