Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

6002888 .. 6006410

Gene Structure 3523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGATCATCGAAAGGATTAAAGAAATCGAGGCCGAGATGGCTCGGACTCAGAAGAATAAAGCTACAGAGTATCATCTTGGTCAGCTCAAGGCAAAGATTGCAAAACTCAGGACACAACTGTTGGAGCCTCCAAAAGGTGCTAGTGGAGGCGGGGAAGGTTTTGAAGTTACCAAGTATGGTCATGGACGTGTTGCACTTATAGGATTTCCTAGTGTCGGAAAGTCCACGCTTTTGACTATGTTAACTGGAACACATTCTGAAGCAGCCTCATATGAATTTACAACACTTACATGCATCCCTGGTGTAATTCACTACAACGACACAAAGATTCAGCTTCTCGATCTTCCTGGGATTATTGAAGGTGCTTCGGAAGGAAAGGGGCGAGGAAGGCAGGTTATTGCTGTTGCAAAGTCTTCCGACCTTGTATTGATGGTTCTTGATGCCTCAAAAAGCGAAGGCCACAGGCAAATATTGACTAAGGAACTTGAGGCAGTGGGCTTGCGACTAAACAAAACTCCTCCGCAGATATACTTTAAAAAGAAAAAGACTGGTGGAATCTCTTTCAACACTACAGCACCCTTGACTCACATTGATGAGAAGCTCTGTTATCAAATCCTGCATGAATACAAGATTCACAATGCTGAGGTGCTATTTCGTGAGAATGCCACAGTGGATGACTTTATTGATGTCATTGAAGGCAACCGCAAGTATATTAAGTGTGTTTATGTCTACAACAAAATAGATGTTGTTGGAATTGATGATGTGGATAGACTATCCCGGCAGCCAAATTCCATTGTTATTAGCTGCAATCTTAAGCTTAACTTAGACAGACTACTTGCAAGGATGTGGGACGAAATGGGCCTTGTGAGAGTTTACTCGAAGCCGCAAGGCCAGCAACCAGATTTCGATGAGCCTTTTGTCCTCTCATCTGATCGAGGTGGCTGCACAGTGGAAGACTTCTGTAACCACGTCCACAGGACTCTGGTGAAGGATATGAAGTATGCACTCGTTTGGGGCACAAGCACAAGGCACAATCCACAGAATTGTGGTCTTTCTCAACATCTTGAAGACGAAGATGTTGTTCAGATCGTCAAGAAAAAGGAGAGAGACGAAGGAGGAAGAGGCCGGTTCAAGTCACACTCAAACGCCCCTGCTAGAATTGCAGACAGAGAGAAAAAAGCTCCTCTTAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

399

Amino Acids

44.64

Weight (kDa)

8.85

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	64 - 180	8.4e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	64 - 159	1.9e-12	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	184 - 289	8.7e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	290 - 366	3.6e-20	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	4 cut(s)	153, 524, 706, 887
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	2 cut(s)	278, 790
AcuI	CTGAAG	1 cut(s)	282
AfiI	CCNNNNNNNGG	2 cut(s)	137, 218
AflII	CTTAAG	2 cut(s)	815, 1190
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	6 cut(s)	167, 362, 568, 698, 1070, 1135
AjiI	CACGTC	2 cut(s)	191, 973
AjnI	CCWGG	2 cut(s)	301, 349
AluBI	AGCT	7 cut(s)	65, 88, 337, 604, 807, 820, 1184
AluI	AGCT	7 cut(s)	65, 88, 337, 604, 807, 820, 1184
Alw26I	GTCTC	1 cut(s)	1104
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	5 cut(s)	33, 460, 862, 892, 1126
ApeKI	GCWGC	4 cut(s)	266, 784, 807, 945
ApoI	RAATTY	2 cut(s)	278, 790
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	862
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	1000
BaeGI	GKGCMC	1 cut(s)	1022
BbsI	GAAGAC	3 cut(s)	408, 963, 1077
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	4 cut(s)	278, 794, 796, 932
BccI	CCATC	2 cut(s)	34, 427
BcgI	CGANNNNNNTGC	2 cut(s)	927, 961
BciT130I	CCWGG	2 cut(s)	303, 351
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	1 cut(s)	1104
BfaI	CTAG	3 cut(s)	144, 213, 1158
BfmI	CTRYAG	2 cut(s)	66, 573
BfrI	CTTAAG	2 cut(s)	815, 1190
BfuAI	ACCTGC	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	5 cut(s)	267, 785, 808, 887, 946
BlsI	GCNGC	5 cut(s)	268, 786, 809, 888, 947
Bme1390I	CCNGG	3 cut(s)	303, 351, 781
BmgBI	CACGTC	2 cut(s)	191, 973
BmgT120I	GGNCC	1 cut(s)	862
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	3 cut(s)	303, 351, 781
BmsI	GCATC	2 cut(s)	306, 433
BpiI	GAAGAC	3 cut(s)	408, 963, 1077
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	74, 509
BpuMI	CCSGG	1 cut(s)	781
BsaJI	CCNNGG	2 cut(s)	301, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 218
Bse118I	RCCGGY	1 cut(s)	1128
Bse1I	ACTGG	2 cut(s)	253, 556
BseBI	CCWGG	2 cut(s)	303, 351
BseDI	CCNNGG	2 cut(s)	301, 350
BseGI	GGATG	3 cut(s)	297, 682, 852
BseLI	CCNNNNNNNGG	2 cut(s)	137, 218
BseMII	CTCAG	3 cut(s)	65, 124, 636
BseNI	ACTGG	2 cut(s)	253, 556
BseRI	GAGGAG	2 cut(s)	510, 1176
BseSI	GKGCMC	1 cut(s)	1022
BseXI	GCAGC	4 cut(s)	278, 794, 796, 932
BsgI	GTGCAG	1 cut(s)	931
BshFI	GGCC	5 cut(s)	35, 462, 864, 894, 1128
BsiSI	CCGG	2 cut(s)	781, 1129
BslFI	GGGAC	1 cut(s)	866
BslI	CCNNNNNNNGG	2 cut(s)	137, 218
BsmAI	GTCTC	1 cut(s)	1104
BsmBI	CGTCTC	1 cut(s)	1104
BsmFI	GGGAC	1 cut(s)	866
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	5 cut(s)	35, 462, 864, 894, 1128
Bsp1286I	GDGCHC	1 cut(s)	1022
Bsp143I	GATC	4 cut(s)	6, 343, 934, 1089
BspACI	CCGC	4 cut(s)	153, 524, 706, 887
BspANI	GGCC	5 cut(s)	35, 462, 864, 894, 1128
BspCNI	CTCAG	3 cut(s)	64, 123, 637
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	1 cut(s)	14
BspTI	CTTAAG	2 cut(s)	815, 1190
BsrFI	RCCGGY	1 cut(s)	1128
BsrI	ACTGG	2 cut(s)	253, 556
BssAI	RCCGGY	1 cut(s)	1128
BssECI	CCNNGG	2 cut(s)	301, 350
BssMI	GATC	4 cut(s)	6, 343, 934, 1089
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	3 cut(s)	123, 673, 952
Bst6I	CTCTTC	1 cut(s)	1117
BstAFI	CTTAAG	2 cut(s)	815, 1190
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	503, 896
BstDEI	CTNAG	5 cut(s)	51, 110, 480, 645, 826
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	297, 682, 852
BstKTI	GATC	4 cut(s)	9, 346, 937, 1092
BstMAI	GTCTC	1 cut(s)	1104
BstMBI	GATC	4 cut(s)	6, 343, 934, 1089
BstMWI	GCNNNNNNNGC	5 cut(s)	41, 101, 391, 895, 1163
BstNI	CCWGG	2 cut(s)	303, 351
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	301, 349, 779
BstSFI	CTRYAG	2 cut(s)	66, 573
BstSLI	GKGCMC	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	278, 794, 796, 932
BstV2I	GAAGAC	3 cut(s)	408, 963, 1077
BsuRI	GGCC	5 cut(s)	35, 462, 864, 894, 1128
BtrI	CACGTC	2 cut(s)	191, 973
BtsCI	GGATG	3 cut(s)	297, 682, 852
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	3 cut(s)	501, 678, 957
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	503, 896
Cfr10I	RCCGGY	1 cut(s)	1128
Cfr13I	GGNCC	1 cut(s)	862
CviAII	CATG	3 cut(s)	185, 294, 623
DdeI	CTNAG	5 cut(s)	51, 110, 480, 645, 826
DpnI	GATC	4 cut(s)	8, 345, 936, 1091
DpnII	GATC	4 cut(s)	6, 343, 934, 1089
DraI	TTTAAA	1 cut(s)	538
Eam1104I	CTCTTC	1 cut(s)	1117
EarI	CTCTTC	1 cut(s)	1117
Eco57I	CTGAAG	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	301, 349
EcoT22I	ATGCAT	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	1104
FaeI	CATG	3 cut(s)	188, 297, 626
FalI	AAGNNNNNCTT	3 cut(s)	809, 841, 1173
FaqI	GGGAC	1 cut(s)	866
FatI	CATG	3 cut(s)	184, 293, 622
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	5 cut(s)	267, 785, 808, 887, 946
FokI	GGATG	3 cut(s)	284, 689, 859
Fsp4HI	GCNGC	5 cut(s)	267, 785, 808, 887, 946
FspBI	CTAG	3 cut(s)	144, 213, 1158
GluI	GCNGC	5 cut(s)	267, 785, 808, 887, 946
HaeIII	GGCC	5 cut(s)	35, 462, 864, 894, 1128
HapII	CCGG	2 cut(s)	781, 1129
Hin1II	CATG	3 cut(s)	188, 297, 626
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	6 cut(s)	49, 331, 558, 586, 634, 982
HpaI	GTTAAC	1 cut(s)	246
HpaII	CCGG	2 cut(s)	781, 1129
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	5 cut(s)	228, 246, 733, 877, 976
Hpy188I	TCNGA	8 cut(s)	48, 54, 221, 262, 373, 421, 934, 1089
Hpy188III	TCNNGA	6 cut(s)	112, 341, 440, 659, 1067, 1096
Hpy8I	GTNNAC	5 cut(s)	228, 246, 733, 877, 976
HpyAV	CCTTC	8 cut(s)	152, 356, 368, 384, 452, 692, 985, 1109
HpyCH4III	ACNGT	3 cut(s)	123, 673, 952
HpyCH4IV	ACGT	2 cut(s)	190, 972
HpyF10VI	GCNNNNNNNGC	5 cut(s)	41, 101, 391, 895, 1163
HpyF3I	CTNAG	5 cut(s)	51, 110, 480, 645, 826
HpySE526I	ACGT	2 cut(s)	190, 972
Hsp92II	CATG	3 cut(s)	188, 297, 626
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	6, 343, 934, 1089
LmnI	GCTCC	2 cut(s)	127, 1189
Lsp1109I	GCAGC	4 cut(s)	278, 794, 796, 932
LweI	GCATC	2 cut(s)	306, 433
MaeI	CTAG	3 cut(s)	144, 213, 1158
MaeII	ACGT	2 cut(s)	190, 972
MaeIII	GTNAC	3 cut(s)	169, 965, 1137
MalI	GATC	4 cut(s)	8, 345, 936, 1091
MboI	GATC	4 cut(s)	6, 343, 934, 1089
MboII	GAAGA	7 cut(s)	67, 338, 408, 968, 1082, 1088, 1134
MhlI	GDGCHC	1 cut(s)	1022
MluCI	AATT	6 cut(s)	278, 309, 756, 790, 1045, 1161
MlyI	GAGTC	3 cut(s)	43, 580, 976
MmeI	TCCRAC	4 cut(s)	105, 199, 444, 733
Mph1103I	ATGCAT	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	256
MseI	TTAA	7 cut(s)	21, 245, 537, 717, 816, 822, 1191
MslI	CAYNNNNRTG	3 cut(s)	189, 292, 594
MspCI	CTTAAG	2 cut(s)	815, 1190
MspI	CCGG	2 cut(s)	781, 1129
MspR9I	CCNGG	3 cut(s)	303, 351, 781
Mva1269I	GAATGC	1 cut(s)	670
MvaI	CCWGG	2 cut(s)	303, 351
MwoI	GCNNNNNNNGC	5 cut(s)	41, 101, 391, 895, 1163
NciI	CCSGG	1 cut(s)	781
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	4 cut(s)	6, 343, 934, 1089
NlaIII	CATG	3 cut(s)	188, 297, 626
NlaIV	GGNNCC	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1137
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	297
PctI	GAATGC	1 cut(s)	670
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	331, 558, 634
PkrI	GCNGC	5 cut(s)	268, 786, 809, 888, 947
PleI	GAGTC	3 cut(s)	43, 580, 976
PpsI	GAGTC	3 cut(s)	43, 580, 976
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	862
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
RseI	CAYNNNNRTG	3 cut(s)	189, 292, 594
SaqAI	TTAA	7 cut(s)	21, 245, 537, 717, 816, 822, 1191
SatI	GCNGC	5 cut(s)	267, 785, 808, 887, 946
Sau3AI	GATC	4 cut(s)	6, 343, 934, 1089
Sau96I	GGNCC	1 cut(s)	862
SchI	GAGTC	3 cut(s)	43, 580, 976
ScrFI	CCNGG	3 cut(s)	303, 351, 781
SduI	GDGCHC	1 cut(s)	1022
SfaNI	GCATC	2 cut(s)	306, 433
SfcI	CTRYAG	2 cut(s)	66, 573
SmiMI	CAYNNNNRTG	3 cut(s)	189, 292, 594
SmlI	CTYRAG	4 cut(s)	89, 488, 815, 1190
SmoI	CTYRAG	4 cut(s)	89, 488, 815, 1190
Sse9I	AATT	6 cut(s)	278, 309, 756, 790, 1045, 1161
SsiI	CCGC	4 cut(s)	153, 524, 706, 887
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	3 cut(s)	144, 213, 1158
StyD4I	CCNGG	3 cut(s)	301, 349, 779
TaaI	ACNGT	3 cut(s)	123, 673, 952
TaiI	ACGT	2 cut(s)	193, 975
TaqI	TCGA	6 cut(s)	12, 30, 342, 881, 909, 937
TasI	AATT	6 cut(s)	278, 309, 756, 790, 1045, 1161
TauI	GCSGC	1 cut(s)	889
TfiI	GAWTC	3 cut(s)	331, 558, 634
Tru1I	TTAA	7 cut(s)	21, 245, 537, 717, 816, 822, 1191
Tru9I	TTAA	7 cut(s)	21, 245, 537, 717, 816, 822, 1191
TscAI	CASTG	3 cut(s)	501, 678, 957
TseFI	GTSAC	1 cut(s)	1137
TseI	GCWGC	4 cut(s)	266, 784, 807, 945
Tsp45I	GTSAC	1 cut(s)	1137
TspDTI	ATGAA	3 cut(s)	291, 639, 1013
TspRI	CASTG	3 cut(s)	501, 678, 957
Vha464I	CTTAAG	2 cut(s)	815, 1190
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	2 cut(s)	278, 790
XceI	RCATGY	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	732
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	3 cut(s)	144, 213, 1158
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.