Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

17154098 .. 17158016

Gene Structure 3919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1168800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGATCATCGAAAGGATCAAGGAAATTGAGGCCGAAATGGCTCGAACTCAGAAAAATAAAGCCACAGAGTATCATCTTGGCCAGCTCAAGGCAAAGATTGCCAAGCTCAGGACTCAGCTTTTGGAGCCTCCGAAAGGGTCTAGCGGAGGTGGAGATGGTTTCGAAGTTACAAAATTTGGTCATGGACGTGTTGCGCTTATTGGGTTTCCAAGTGTGGGAAAGTCGACACTTTTGACTATGTTGACGGGCACACACTCTGAAGCTGCATCTTATGAGTTCACAACTCTTACCTGCATTCCTGGGATTATACATTACAATGATACAAAAATTCAGCTGCTCGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAAGGTCGTGGGAGGCAGGTCATTGCTGTTGCCAAGTCTTCAGATATTGTGTTGATGGTCCTTGATGCCTCAAAAAGTGAAGGCCATCGGCAAATATTGACGAAGGAGCTGGAAGCTGTGGGCTTACGTTTAAACAAGAAACCACCTCAAATTTACTTCAAAAAGAAAAAGACTGGAGGAATTTCTTTCAACAGCACTCTCACTTTGACTCATGTGGACGAGAAGCTTTGCTATCAAATTCTTCACGAATACAAAATTCACAATGCTGAGTTGCTGTTTCGTGAGGACGCCACAGTGGATGATCTTATCGATGTCATTGAGGGAAACCGGAAATACATGAAGTGTGTATATGTATACAACAAGATAGATGTTATTGGTATTGATGATGTGGACAAATTAGCCCGGCAACCTAATTCCGTTGTCATTAGTTGCAATCTCAAGCTGAACTTTGACAGACTACTTGCAAAAATGTGGGAGGAGATGGGACTTGTTAGAGTTTATACCAAGCCACAGGGCCAGCAACCTGATTTCGGTGATCCTGTAGTTCTTTCTGCTGATAGAGGGGGCTGCTCTGTTGGAGACTTTTGTAACCATATACACAGGAGTTTAGTGAAGGAAGTCAAATACGTGCTAGTGTGGGGTACAAGCGCAAGGCACTACCCACAGCATTGTGGTCTCGGTCATGTTTTGAATGACGAAGATGTGGTTCAGATTGTCAAGAAAAAGGACAAGGAAGGGGAAGGGAGGGGTCGTTTCAAGTCACATTCAACAGACCCTGCTCGTATATCCGACAGAGTGAAGAAGGCTCCCCTGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

400

Amino Acids

44.42

Weight (kDa)

9.06

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	64 - 181	4.8e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	64 - 159	2.7e-12	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	184 - 289	3e-41	C-terminal region of MMR_HSR1 domain
TGS	PF02824	290 - 366	6.7e-20	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 385
AccI	GTMKAC	2 cut(s)	227, 732
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	14, 26, 908
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	6 cut(s)	176, 330, 528, 558, 615, 633
AcuI	CTGAAG	3 cut(s)	282, 393, 402
AcyI	GRCGYC	1 cut(s)	666
AfaI	GTAC	1 cut(s)	1021
AfiI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	6 cut(s)	362, 538, 568, 1069, 1135, 1146
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	301, 349
AluBI	AGCT	9 cut(s)	88, 109, 121, 266, 337, 487, 494, 604, 820
AluI	AGCT	9 cut(s)	88, 109, 121, 266, 337, 487, 494, 604, 820
Alw26I	GTCTC	2 cut(s)	951, 1058
AlwI	GGATC	3 cut(s)	14, 26, 908
AlwNI	CAGNNNCTG	1 cut(s)	1154
AoxI	GGCC	4 cut(s)	33, 82, 460, 892
ApeKI	GCWGC	3 cut(s)	266, 337, 945
ApoI	RAATTY	6 cut(s)	176, 330, 528, 558, 615, 633
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	2 cut(s)	199, 1028
AspS9I	GGNCC	2 cut(s)	436, 892
AsuC2I	CCSGG	1 cut(s)	781
AsuHPI	GGTGA	1 cut(s)	923
AsuII	TTCGAA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	3 cut(s)	253, 324, 932
BccI	CCATC	4 cut(s)	152, 427, 471, 853
BciT130I	CCWGG	2 cut(s)	303, 351
BcnI	CCSGG	1 cut(s)	781
BcoDI	GTCTC	2 cut(s)	951, 1058
BfaI	CTAG	2 cut(s)	144, 1010
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	2 cut(s)	302, 385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	267, 338, 946
BlsI	GCNGC	3 cut(s)	268, 339, 947
Bme1390I	CCNGG	3 cut(s)	303, 351, 781
Bme18I	GGWCC	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	436, 892
BmiI	GGNNCC	2 cut(s)	129, 1185
BmrFI	CCNGG	3 cut(s)	303, 351, 781
BmsI	GCATC	2 cut(s)	278, 433
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	74, 800
BpuMI	CCSGG	1 cut(s)	781
Bsa29I	ATCGAT	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	1006
BsaHI	GRCGYC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	1058
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	705
BsaXI	ACNNNNNCTCC	2 cut(s)	1114, 1144
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	303, 351
BseCI	ATCGAT	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	682
BseLI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	4 cut(s)	65, 124, 131, 636
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	869
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	253, 324, 932
BshFI	GGCC	4 cut(s)	35, 84, 462, 894
BshVI	ATCGAT	1 cut(s)	687
BsiSI	CCGG	2 cut(s)	706, 781
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BsmAI	GTCTC	2 cut(s)	951, 1058
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	35, 84, 462, 894
Bso31I	GGTCTC	1 cut(s)	1058
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	5 cut(s)	6, 18, 343, 679, 913
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	4 cut(s)	35, 84, 462, 894
BspCNI	CTCAG	4 cut(s)	64, 123, 130, 637
BspDI	ATCGAT	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	129, 1185
BspMI	ACCTGC	2 cut(s)	302, 385
BspPI	GGATC	3 cut(s)	14, 26, 908
BspT104I	TTCGAA	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	1058
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	5 cut(s)	6, 18, 343, 679, 913
BssNAI	GTATAC	1 cut(s)	733
BssNI	GRCGYC	1 cut(s)	666
Bst1107I	GTATAC	1 cut(s)	733
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	1 cut(s)	673
BstACI	GRCGYC	1 cut(s)	666
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstBAI	YACGTR	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	86, 896
BstDEI	CTNAG	4 cut(s)	51, 110, 117, 645
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	1 cut(s)	682
BstHHI	GCGC	2 cut(s)	199, 1028
BstKTI	GATC	5 cut(s)	9, 21, 346, 682, 916
BstMAI	GTCTC	2 cut(s)	951, 1058
BstMBI	GATC	5 cut(s)	6, 18, 343, 679, 913
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
BstNI	CCWGG	2 cut(s)	303, 351
BstSCI	CCNGG	3 cut(s)	301, 349, 779
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	3 cut(s)	253, 324, 932
BstV2I	GAAGAC	1 cut(s)	408
BstZ17I	GTATAC	1 cut(s)	733
Bsu15I	ATCGAT	1 cut(s)	687
BsuRI	GGCC	4 cut(s)	35, 84, 462, 894
BsuTUI	ATCGAT	1 cut(s)	687
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	682
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	2 cut(s)	302, 385
Cac8I	GCNNGC	2 cut(s)	86, 896
CaiI	CAGNNNCTG	1 cut(s)	1154
CfoI	GCGC	2 cut(s)	199, 1028
Cfr13I	GGNCC	2 cut(s)	436, 892
ClaI	ATCGAT	1 cut(s)	687
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	1 cut(s)	1020
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	4 cut(s)	185, 590, 715, 1061
CviQI	GTAC	1 cut(s)	1020
DdeI	CTNAG	4 cut(s)	51, 110, 117, 645
DpnI	GATC	5 cut(s)	8, 20, 345, 681, 915
DpnII	GATC	5 cut(s)	6, 18, 343, 679, 913
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	1058
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	282, 393, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	301, 349
FaeI	CATG	4 cut(s)	188, 593, 718, 1064
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	4 cut(s)	184, 589, 714, 1060
FblI	GTMKAC	2 cut(s)	227, 732
Fnu4HI	GCNGC	3 cut(s)	267, 338, 946
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	3 cut(s)	267, 338, 946
FspBI	CTAG	2 cut(s)	144, 1010
GlaI	GCGC	2 cut(s)	198, 1027
GluI	GCNGC	3 cut(s)	267, 338, 946
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	35, 84, 462, 894
HapII	CCGG	2 cut(s)	706, 781
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	2 cut(s)	199, 1028
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	4 cut(s)	188, 593, 718, 1064
Hin6I	GCGC	2 cut(s)	197, 1026
HinP1I	GCGC	2 cut(s)	197, 1026
HincII	GTYRAC	2 cut(s)	228, 246
HindII	GTYRAC	2 cut(s)	228, 246
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	2 cut(s)	115, 586
HpaII	CCGG	2 cut(s)	706, 781
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	6 cut(s)	228, 246, 282, 595, 733, 769
Hpy188I	TCNGA	7 cut(s)	54, 135, 262, 373, 421, 1089, 1168
Hpy188III	TCNNGA	4 cut(s)	112, 623, 659, 1096
Hpy8I	GTNNAC	6 cut(s)	228, 246, 282, 595, 733, 769
HpyAV	CCTTC	8 cut(s)	356, 368, 452, 475, 985, 1106, 1112, 1174
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	3 cut(s)	190, 505, 1005
HpyCH4V	TGCA	4 cut(s)	269, 297, 810, 842
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
HpyF3I	CTNAG	4 cut(s)	51, 110, 117, 645
HpySE526I	ACGT	3 cut(s)	190, 505, 1005
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	4 cut(s)	188, 593, 718, 1064
HspAI	GCGC	2 cut(s)	197, 1026
Kzo9I	GATC	5 cut(s)	6, 18, 343, 679, 913
LmnI	GCTCC	3 cut(s)	127, 484, 1189
Lsp1109I	GCAGC	3 cut(s)	253, 324, 932
LweI	GCATC	2 cut(s)	278, 433
MaeI	CTAG	2 cut(s)	144, 1010
MaeII	ACGT	3 cut(s)	190, 505, 1005
MaeIII	GTNAC	3 cut(s)	169, 965, 1137
MalI	GATC	5 cut(s)	8, 20, 345, 681, 915
MboI	GATC	5 cut(s)	6, 18, 343, 679, 913
MboII	GAAGA	5 cut(s)	338, 408, 611, 1088, 1189
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	84
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	109, 580
MmeI	TCCRAC	2 cut(s)	934, 1191
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	189, 318
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	2 cut(s)	706, 781
MspR9I	CCNGG	3 cut(s)	303, 351, 781
MssI	GTTTAAAC	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	303, 351
MwoI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
NciI	CCSGG	1 cut(s)	781
NdeII	GATC	5 cut(s)	6, 18, 343, 679, 913
NlaIII	CATG	4 cut(s)	188, 593, 718, 1064
NlaIV	GGNNCC	2 cut(s)	129, 1185
NmuCI	GTSAC	1 cut(s)	1137
NspV	TTCGAA	1 cut(s)	165
PctI	GAATGC	1 cut(s)	297
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	268, 339, 947
PleI	GAGTC	2 cut(s)	109, 580
PmeI	GTTTAAAC	1 cut(s)	510
PpsI	GAGTC	2 cut(s)	109, 580
Ppu21I	YACGTR	1 cut(s)	1006
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PspN4I	GGNNCC	2 cut(s)	129, 1185
PspPI	GGNCC	2 cut(s)	436, 892
PstNI	CAGNNNCTG	1 cut(s)	1154
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	1021
RsaNI	GTAC	1 cut(s)	1020
RseI	CAYNNNNRTG	2 cut(s)	189, 318
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	267, 338, 946
Sau3AI	GATC	5 cut(s)	6, 18, 343, 679, 913
Sau96I	GGNCC	2 cut(s)	436, 892
SchI	GAGTC	2 cut(s)	109, 580
ScrFI	CCNGG	3 cut(s)	303, 351, 781
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	2 cut(s)	278, 433
SfcI	CTRYAG	1 cut(s)	918
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	189, 318
SmlI	CTYRAG	2 cut(s)	89, 815
SmoI	CTYRAG	2 cut(s)	89, 815
SsiI	CCGC	1 cut(s)	147
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	2 cut(s)	144, 1010
StyD4I	CCNGG	3 cut(s)	301, 349, 779
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	3 cut(s)	193, 508, 1008
TaqI	TCGA	6 cut(s)	12, 46, 165, 227, 342, 687
TaqII	GACCGA	1 cut(s)	1046
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	1 cut(s)	1137
TseI	GCWGC	3 cut(s)	266, 337, 945
Tsp45I	GTSAC	1 cut(s)	1137
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	1 cut(s)	784
TspRI	CASTG	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	6 cut(s)	176, 330, 528, 558, 615, 633
XmiI	GTMKAC	2 cut(s)	227, 732
XspI	CTAG	2 cut(s)	144, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.