Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

27353765 .. 27356852

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGAATTGTGGAAAGGATAAAAGAGATCGAAGCCGAGATGGCTCGGACGCAGAAGAACAAAGCTACAGAGTATCATCTTGGTCAGCTCAAGGCAAAAATTGCAAAGCTCAGAACACAACTCTTAGAGCCTCCAAAAGGCTCTAGTGGAGGTGGGGATGGTTTTGAAGTTACAAAGTATGGGCATGGACGTGTTGCACTTATAGGATTTCCAAGTGTTGGAAAGTCTACGCTTTTGACAATGTTAACTGGCACACATTCTGAAGCAGCCTCATATGAATTTACAACACTTACATGCATCCCTGGAGTTATTCACTACAATGACACCAAAATCCAGTTGCTTGATCTTCCTGGGATTATTGAAGGTGCTTCAGAAGGAAAGGGACGAGGGAGGCAGGTTATTGCTGTTGCAAAGTCTTCAGACCTTGTGTTGATGGTTCTTGATGCCTCAAAAAGTGAAGGCCACAGGCAAATACTGACTAAGGAGCTTGAAGCAGTTGGTCTGCGTCTGAACAAAAGACCTCCACAGATATACTTTAAGAAGAAGAAGACTGGTGGGATTTCTTTCAACACTACAACCCCCTTGACTCGCATTGATGAGAAGCTCTGTTATCAAATTCTGCATGAATACAAGATTCACAATGCTGAGGTTCTATTTCGTGAAGATGCTACGGTGGATGACTTTATTGATGTCGTTGAAGGCAATCGCAAATACATCAAATGTGTATATGTCTACAACAAAATAGATGTTGTTGGAATCGATGACGTTGATAGGCTGGCACGGCAGCCAAATTCTATTGTTATTAGCTGCAACCTAAAGCTAAACTTAGACAGACTACTTGCAAGAATGTGGGACGAAATGGGACTTGTGAGAGTTTACTCAAAGCCTCAAAGCCAGCAACCAGATTTCGATGAACCCTTTGTCCTCTCAGCTGATAGAGGTGGCTGCACAGTTGAAGATTTCTGTAACCAAGTCCACAGAACTCTGGTGAAGGATATGAAGTATGCACTAGTTTGGGGCACAAGCGCTAGGCACTACCCTCAACACTGTGGTCTTTTTCATCATCTTGAGGATGAAGATGTTGTTCAAATTGTCAAGAAAAAGGTGAGAGAAGAAGGGGGAAGGGGACGGTTCAAGTCACACTCGAACGCACCTGCTAGAATTGCAGACCGAGAGAAGAAAGCTCCACTAAAGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

399

Amino Acids

44.8

Weight (kDa)

9.01

Isoelectric Point (pI)

29.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	2 - 101	5.9e-14	50S ribosome-binding GTPase
MMR_HSR1_Xtn	PF16897	104 - 209	5.5e-42	C-terminal region of MMR_HSR1 domain
TGS	PF02824	210 - 286	9.3e-19	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1162
Acc36I	ACCTGC	2 cut(s)	385, 1162
AccB7I	CCANNNNNTGG	1 cut(s)	218
AccI	GTMKAC	2 cut(s)	227, 732
AcsI	RAATTY	3 cut(s)	278, 615, 790
AcuI	CTGAAG	3 cut(s)	282, 354, 402
AfeI	AGCGCT	1 cut(s)	1027
AfiI	CCNNNNNNNGG	2 cut(s)	137, 218
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	8 cut(s)	167, 362, 491, 568, 698, 956, 1088, 1135
AhlI	ACTAGT	1 cut(s)	1009
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	301, 349
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	9 cut(s)	65, 88, 109, 487, 604, 807, 820, 932, 1184
AluI	AGCT	9 cut(s)	65, 88, 109, 487, 604, 807, 820, 932, 1184
Aor51HI	AGCGCT	1 cut(s)	1027
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	4 cut(s)	266, 784, 807, 945
ApoI	RAATTY	3 cut(s)	278, 615, 790
AspLEI	GCGC	1 cut(s)	1028
AsuHPI	GGTGA	2 cut(s)	1000, 1117
BaeGI	GKGCMC	1 cut(s)	1022
BbsI	GAAGAC	2 cut(s)	408, 554
BbvCI	CCTCAGC	1 cut(s)	645
BbvI	GCAGC	4 cut(s)	278, 794, 796, 932
BccI	CCATC	3 cut(s)	34, 152, 427
BceAI	ACGGC	1 cut(s)	797
BciT130I	CCWGG	2 cut(s)	303, 351
BcuI	ACTAGT	1 cut(s)	1009
BfaI	CTAG	4 cut(s)	144, 1010, 1029, 1158
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	1029
BfuAI	ACCTGC	2 cut(s)	385, 1162
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	4 cut(s)	267, 785, 808, 946
BlsI	GCNGC	4 cut(s)	268, 786, 809, 947
Bme1390I	CCNGG	2 cut(s)	303, 351
BmgBI	CACGTC	1 cut(s)	191
BmrFI	CCNGG	2 cut(s)	303, 351
BmsI	GCATC	3 cut(s)	306, 433, 655
BpiI	GAAGAC	2 cut(s)	408, 554
BpmI	CTGGAG	1 cut(s)	324
Bpu10I	CCTNAGC	1 cut(s)	645
BpuEI	CTTGAG	2 cut(s)	74, 1088
Bsa29I	ATCGAT	1 cut(s)	759
BsaJI	CCNNGG	2 cut(s)	301, 350
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 218
Bse1I	ACTGG	3 cut(s)	253, 334, 556
BseBI	CCWGG	2 cut(s)	303, 351
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	301, 350
BseGI	GGATG	4 cut(s)	163, 297, 682, 1078
BseLI	CCNNNNNNNGG	2 cut(s)	137, 218
BseMII	CTCAG	3 cut(s)	124, 636, 942
BseNI	ACTGG	3 cut(s)	253, 334, 556
BseSI	GKGCMC	1 cut(s)	1022
BseXI	GCAGC	4 cut(s)	278, 794, 796, 932
BsgI	GTGCAG	1 cut(s)	931
BshFI	GGCC	1 cut(s)	462
BshVI	ATCGAT	1 cut(s)	759
BslFI	GGGAC	4 cut(s)	396, 866, 876, 1140
BslI	CCNNNNNNNGG	2 cut(s)	137, 218
BsmFI	GGGAC	4 cut(s)	396, 866, 876, 1140
BsnI	GGCC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	1022
Bsp143I	GATC	2 cut(s)	27, 343
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	3 cut(s)	123, 637, 941
BspDI	ATCGAT	1 cut(s)	759
BspMI	ACCTGC	2 cut(s)	385, 1162
BsrI	ACTGG	3 cut(s)	253, 334, 556
BssECI	CCNNGG	2 cut(s)	301, 350
BssMI	GATC	2 cut(s)	27, 343
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	4 cut(s)	673, 952, 1049, 1131
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	777, 896
BstDEI	CTNAG	6 cut(s)	110, 124, 480, 645, 826, 928
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	4 cut(s)	163, 297, 682, 1078
BstH2I	RGCGCY	1 cut(s)	1029
BstHHI	GCGC	1 cut(s)	1028
BstKTI	GATC	2 cut(s)	30, 346
BstMBI	GATC	2 cut(s)	27, 343
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 101, 781, 1163
BstNI	CCWGG	2 cut(s)	303, 351
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	301, 349
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	1 cut(s)	1022
BstV1I	GCAGC	4 cut(s)	278, 794, 796, 932
BstV2I	GAAGAC	2 cut(s)	408, 554
Bsu15I	ATCGAT	1 cut(s)	759
BsuRI	GGCC	1 cut(s)	462
BsuTUI	ATCGAT	1 cut(s)	759
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	4 cut(s)	163, 297, 682, 1078
BtsIMutI	CAGTG	1 cut(s)	1045
BveI	ACCTGC	2 cut(s)	385, 1162
Cac8I	GCNNGC	2 cut(s)	777, 896
CfoI	GCGC	1 cut(s)	1028
ClaI	ATCGAT	1 cut(s)	759
CseI	GACGC	2 cut(s)	58, 494
CviAII	CATG	3 cut(s)	185, 294, 623
DdeI	CTNAG	6 cut(s)	110, 124, 480, 645, 826, 928
DpnI	GATC	2 cut(s)	29, 345
DpnII	GATC	2 cut(s)	27, 343
Eco47III	AGCGCT	1 cut(s)	1027
Eco57I	CTGAAG	3 cut(s)	282, 354, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRII	CCWGG	2 cut(s)	301, 349
EcoT22I	ATGCAT	1 cut(s)	299
FaeI	CATG	3 cut(s)	188, 297, 626
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	4 cut(s)	396, 866, 876, 1140
FatI	CATG	3 cut(s)	184, 293, 622
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	2 cut(s)	227, 732
Fnu4HI	GCNGC	4 cut(s)	267, 785, 808, 946
FokI	GGATG	4 cut(s)	170, 284, 689, 1085
Fsp4HI	GCNGC	4 cut(s)	267, 785, 808, 946
FspBI	CTAG	4 cut(s)	144, 1010, 1029, 1158
GlaI	GCGC	1 cut(s)	1027
GluI	GCNGC	4 cut(s)	267, 785, 808, 946
GsuI	CTGGAG	1 cut(s)	324
HaeII	RGCGCY	1 cut(s)	1029
HaeIII	GGCC	1 cut(s)	462
HgaI	GACGC	2 cut(s)	58, 494
HhaI	GCGC	1 cut(s)	1028
Hin1II	CATG	3 cut(s)	188, 297, 626
Hin6I	GCGC	1 cut(s)	1026
HinP1I	GCGC	1 cut(s)	1026
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HinfI	GANTC	3 cut(s)	586, 634, 756
HpaI	GTTAAC	1 cut(s)	246
HphI	GGTGA	2 cut(s)	1000, 1117
Hpy166II	GTNNAC	5 cut(s)	228, 246, 733, 877, 976
Hpy188I	TCNGA	6 cut(s)	48, 113, 262, 373, 421, 510
Hpy188III	TCNNGA	4 cut(s)	440, 659, 1067, 1096
Hpy8I	GTNNAC	5 cut(s)	228, 246, 733, 877, 976
HpyAV	CCTTC	7 cut(s)	356, 368, 452, 692, 985, 1109, 1116
HpyCH4III	ACNGT	4 cut(s)	673, 952, 1049, 1131
HpyCH4IV	ACGT	2 cut(s)	190, 765
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 101, 781, 1163
HpyF3I	CTNAG	6 cut(s)	110, 124, 480, 645, 826, 928
HpySE526I	ACGT	2 cut(s)	190, 765
Hsp92II	CATG	3 cut(s)	188, 297, 626
HspAI	GCGC	1 cut(s)	1026
KspAI	GTTAAC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	27, 343
LmnI	GCTCC	2 cut(s)	484, 1189
Lsp1109I	GCAGC	4 cut(s)	278, 794, 796, 932
LweI	GCATC	3 cut(s)	306, 433, 655
MaeI	CTAG	4 cut(s)	144, 1010, 1029, 1158
MaeII	ACGT	2 cut(s)	190, 765
MaeIII	GTNAC	3 cut(s)	169, 965, 1137
MalI	GATC	2 cut(s)	29, 345
MboI	GATC	2 cut(s)	27, 343
MhlI	GDGCHC	1 cut(s)	1022
MluCI	AATT	7 cut(s)	6, 99, 278, 615, 790, 1089, 1161
MlyI	GAGTC	1 cut(s)	580
MmeI	TCCRAC	2 cut(s)	199, 733
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	2 cut(s)	245, 537
MslI	CAYNNNNRTG	3 cut(s)	189, 292, 318
MspA1I	CMGCKG	1 cut(s)	932
MspR9I	CCNGG	2 cut(s)	303, 351
MvaI	CCWGG	2 cut(s)	303, 351
MwoI	GCNNNNNNNGC	4 cut(s)	41, 101, 781, 1163
NdeI	CATATG	1 cut(s)	274
NdeII	GATC	2 cut(s)	27, 343
NlaIII	CATG	3 cut(s)	188, 297, 626
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	1137
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	1 cut(s)	297
PaqCI	CACCTGC	1 cut(s)	1162
PfeI	GAWTC	2 cut(s)	634, 756
PflMI	CCANNNNNTGG	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	268, 786, 809, 947
PleI	GAGTC	1 cut(s)	580
PpsI	GAGTC	1 cut(s)	580
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PvuII	CAGCTG	1 cut(s)	932
RseI	CAYNNNNRTG	3 cut(s)	189, 292, 318
SaqAI	TTAA	2 cut(s)	245, 537
SatI	GCNGC	4 cut(s)	267, 785, 808, 946
Sau3AI	GATC	2 cut(s)	27, 343
SchI	GAGTC	1 cut(s)	580
ScrFI	CCNGG	2 cut(s)	303, 351
SduI	GDGCHC	1 cut(s)	1022
SfaNI	GCATC	3 cut(s)	306, 433, 655
SfcI	CTRYAG	1 cut(s)	66
SmiMI	CAYNNNNRTG	3 cut(s)	189, 292, 318
SmlI	CTYRAG	2 cut(s)	89, 1067
SmoI	CTYRAG	2 cut(s)	89, 1067
SpeI	ACTAGT	1 cut(s)	1009
Sse9I	AATT	7 cut(s)	6, 99, 278, 615, 790, 1089, 1161
SspMI	CTAG	4 cut(s)	144, 1010, 1029, 1158
StyD4I	CCNGG	2 cut(s)	301, 349
TaaI	ACNGT	4 cut(s)	673, 952, 1049, 1131
TaiI	ACGT	2 cut(s)	193, 768
TaqI	TCGA	4 cut(s)	30, 759, 909, 1145
TaqII	GACCGA	1 cut(s)	1185
TasI	AATT	7 cut(s)	6, 99, 278, 615, 790, 1089, 1161
TfiI	GAWTC	2 cut(s)	634, 756
Tru1I	TTAA	2 cut(s)	245, 537
Tru9I	TTAA	2 cut(s)	245, 537
TscAI	CASTG	1 cut(s)	1052
TseFI	GTSAC	1 cut(s)	1137
TseI	GCWGC	4 cut(s)	266, 784, 807, 945
Tsp45I	GTSAC	1 cut(s)	1137
TspDTI	ATGAA	6 cut(s)	291, 639, 927, 1013, 1049, 1089
TspRI	CASTG	1 cut(s)	1052
Van91I	CCANNNNNTGG	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	3 cut(s)	278, 615, 790
XceI	RCATGY	1 cut(s)	297
XmiI	GTMKAC	2 cut(s)	227, 732
XspI	CTAG	4 cut(s)	144, 1010, 1029, 1158
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.