Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

8389335 .. 8392101

Gene Structure 2767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g10250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGGATCATCGAAAGGATCAAGGAAATTGAGGCCGAAATGGCTCGGACTCAGAAAAATAAAGCCACAGAGTATCATCTTGGCCAGCTCAAGGCAAAGATTGCCAAGCTCAGGACTCAGCTTTTGGAGCCTCCAAAAGGGTCTAGCGGAGGTGGAGATGGTTTCGAAGTTACAAAGTTTGGTCACGGACGTGTTGCGCTTATTGGGTTTCCAAGTGTGGGGAAGTCGACACTTTTGACTATGTTGACGGGCACACACTCTGAAGCTGCATCTTATGAGTTCACAACTCTTACCTGCATTCCTGGGATTATACATTACAATGATACAAAAATTAAGGTGATCGATCTTCCTGGAATTATTGAAGGTGCTTCAGAAGGCAAAGGTCGTGGGAGGCAGGTTATTGCTGTTGCCAAGTCTTCAGATATTGTGTTGATGGTCCTTGATGCCTCAAAAAGTGAAGGCCATCGGCAAATATTGACAAAGGAGCTGGAAGCTGTGGGCTTACGTTTAAACAAGAAGCCGCCTCAAATATACTTCAAAAAGAAAAAGACTGGAGGAATTTCTTTCAACAGCACTTGCACTTTGACTCATGTGGATGAGAAGCTTTGTTATCAAATTCTACACGAATACAAAATTCACAATGCTGAGTTGCTGTTTCGCGAGGATGCGACAGTGGATGATCTTATTGATGTGATTGAGGGAAACCGGAAATACATGAAGTGTGTATATGTGTATAACAAGATAGACGTTATTGGTATTGATGATGTGGACAAATTAGCCCGTCAGCCGAATTCTGTCGTCATTAGTTGCAATCTCAAGCTGAACTTTGACAGACTACTTGCAAAAATGTGGGAAGAGATGGGACTTGTTAGAGTTTATACAAAGCCGCAGGGCCAGCAACCTGATTTCGGTGATCGATCGAATCAATTCCTCTTTGCATGTATGTGTAGGATAGAGGGGGCTGCACTGTTGGAGACTTTTGTAATCACATACACAGGAGTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

336

Amino Acids

37.36

Weight (kDa)

8.67

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 385
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	147, 521, 887
AclWI	GGATC	2 cut(s)	14, 26
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	4 cut(s)	558, 615, 633, 790
AcuI	CTGAAG	3 cut(s)	282, 354, 402
AfiI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	362, 538, 568
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	2 cut(s)	301, 349
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	8 cut(s)	88, 109, 121, 266, 487, 494, 604, 820
AluI	AGCT	8 cut(s)	88, 109, 121, 266, 487, 494, 604, 820
Alw26I	GTCTC	1 cut(s)	968
AlwI	GGATC	2 cut(s)	14, 26
AoxI	GGCC	4 cut(s)	33, 82, 460, 892
ApeKI	GCWGC	2 cut(s)	266, 962
ApoI	RAATTY	4 cut(s)	558, 615, 633, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
Asp700I	GAANNNNTTC	1 cut(s)	926
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	436, 892
AsuHPI	GGTGA	2 cut(s)	349, 923
AsuII	TTCGAA	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	84
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	253, 949
BccI	CCATC	4 cut(s)	152, 427, 471, 853
BciT130I	CCWGG	2 cut(s)	303, 351
BcoDI	GTCTC	1 cut(s)	968
BfaI	CTAG	1 cut(s)	144
BfuAI	ACCTGC	2 cut(s)	302, 385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	4 cut(s)	267, 521, 887, 963
BlsI	GCNGC	4 cut(s)	268, 522, 888, 964
Bme1390I	CCNGG	2 cut(s)	303, 351
Bme18I	GGWCC	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	436, 892
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	2 cut(s)	303, 351
BmsI	GCATC	3 cut(s)	278, 433, 655
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	74, 800
Bsa29I	ATCGAT	2 cut(s)	342, 916
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	2 cut(s)	303, 351
BseCI	ATCGAT	2 cut(s)	342, 916
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	3 cut(s)	601, 670, 682
BseLI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BseMII	CTCAG	4 cut(s)	65, 124, 131, 636
BseNI	ACTGG	1 cut(s)	556
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	253, 949
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	1 cut(s)	660
Bsh1285I	CGRYCG	1 cut(s)	920
BshFI	GGCC	4 cut(s)	35, 84, 462, 894
BshVI	ATCGAT	2 cut(s)	342, 916
BsiEI	CGRYCG	1 cut(s)	920
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BsmAI	GTCTC	1 cut(s)	968
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	4 cut(s)	35, 84, 462, 894
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	3 cut(s)	147, 521, 887
BspANI	GGCC	4 cut(s)	35, 84, 462, 894
BspCNI	CTCAG	4 cut(s)	64, 123, 130, 637
BspDI	ATCGAT	2 cut(s)	342, 916
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	129
BspMI	ACCTGC	2 cut(s)	302, 385
BspPI	GGATC	2 cut(s)	14, 26
BspT104I	TTCGAA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	2 cut(s)	673, 969
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	2 cut(s)	86, 896
BstDEI	CTNAG	4 cut(s)	51, 110, 117, 645
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	601, 670, 682
BstFNI	CGCG	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	7 cut(s)	9, 21, 342, 346, 682, 916, 920
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
BstMCI	CGRYCG	1 cut(s)	920
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
BstNI	CCWGG	2 cut(s)	303, 351
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	2 cut(s)	301, 349
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	2 cut(s)	253, 949
BstV2I	GAAGAC	1 cut(s)	408
Bsu15I	ATCGAT	2 cut(s)	342, 916
BsuRI	GGCC	4 cut(s)	35, 84, 462, 894
BsuTUI	ATCGAT	2 cut(s)	342, 916
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	3 cut(s)	601, 670, 682
BtsIMutI	CAGTG	2 cut(s)	678, 965
BtuMI	TCGCGA	1 cut(s)	660
BveI	ACCTGC	2 cut(s)	302, 385
Cac8I	GCNNGC	2 cut(s)	86, 896
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	436, 892
ClaI	ATCGAT	2 cut(s)	342, 916
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	3 cut(s)	590, 715, 939
DdeI	CTNAG	4 cut(s)	51, 110, 117, 645
DpnI	GATC	7 cut(s)	8, 20, 341, 345, 681, 915, 919
DpnII	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	3 cut(s)	282, 354, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	301, 349
FaeI	CATG	3 cut(s)	593, 718, 942
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	3 cut(s)	589, 714, 938
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	4 cut(s)	267, 521, 887, 963
FokI	GGATG	3 cut(s)	608, 677, 689
Fsp4HI	GCNGC	4 cut(s)	267, 521, 887, 963
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	267, 521, 887, 963
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	4 cut(s)	35, 84, 462, 894
HapII	CCGG	1 cut(s)	706
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	3 cut(s)	593, 718, 942
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	228, 246
HindII	GTYRAC	2 cut(s)	228, 246
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	4 cut(s)	49, 115, 586, 922
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	2 cut(s)	349, 923
Hpy166II	GTNNAC	4 cut(s)	228, 246, 282, 769
Hpy188I	TCNGA	5 cut(s)	48, 54, 262, 373, 421
Hpy188III	TCNNGA	2 cut(s)	112, 659
Hpy8I	GTNNAC	4 cut(s)	228, 246, 282, 769
HpyAV	CCTTC	3 cut(s)	356, 368, 452
HpyCH4III	ACNGT	2 cut(s)	673, 969
HpyCH4IV	ACGT	3 cut(s)	190, 505, 747
HpyCH4V	TGCA	7 cut(s)	269, 297, 579, 810, 842, 938, 965
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
HpyF3I	CTNAG	4 cut(s)	51, 110, 117, 645
HpySE526I	ACGT	3 cut(s)	190, 505, 747
Hsp92II	CATG	3 cut(s)	593, 718, 942
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
LmnI	GCTCC	2 cut(s)	127, 484
Lsp1109I	GCAGC	2 cut(s)	253, 949
LweI	GCATC	3 cut(s)	278, 433, 655
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	3 cut(s)	190, 505, 747
MaeIII	GTNAC	2 cut(s)	169, 182
MalI	GATC	7 cut(s)	8, 20, 341, 345, 681, 915, 919
MboI	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
MboII	GAAGA	3 cut(s)	338, 408, 866
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 926
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	43, 109, 580
MmeI	TCCRAC	1 cut(s)	951
Mox20I	TGGCCA	1 cut(s)	84
MroXI	GAANNNNTTC	1 cut(s)	926
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	333, 509
MslI	CAYNNNNRTG	4 cut(s)	189, 318, 594, 943
Msp20I	TGGCCA	1 cut(s)	84
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	303, 351
MssI	GTTTAAAC	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	303, 351
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
NdeII	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
NlaIII	CATG	3 cut(s)	593, 718, 942
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	182
NruI	TCGCGA	1 cut(s)	660
NspI	RCATGY	1 cut(s)	942
NspV	TTCGAA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	926
PfeI	GAWTC	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	268, 522, 888, 964
Ple19I	CGATCG	1 cut(s)	920
PleI	GAGTC	3 cut(s)	43, 109, 580
PmeI	GTTTAAAC	1 cut(s)	510
PpsI	GAGTC	3 cut(s)	43, 109, 580
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	2 cut(s)	436, 892
PvuI	CGATCG	1 cut(s)	920
RruI	TCGCGA	1 cut(s)	660
RseI	CAYNNNNRTG	4 cut(s)	189, 318, 594, 943
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	333, 509
SatI	GCNGC	4 cut(s)	267, 521, 887, 963
Sau3AI	GATC	7 cut(s)	6, 18, 339, 343, 679, 913, 917
Sau96I	GGNCC	2 cut(s)	436, 892
SchI	GAGTC	3 cut(s)	43, 109, 580
ScrFI	CCNGG	2 cut(s)	303, 351
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	3 cut(s)	278, 433, 655
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	4 cut(s)	189, 318, 594, 943
SmlI	CTYRAG	2 cut(s)	89, 815
SmoI	CTYRAG	2 cut(s)	89, 815
Sse9I	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 926
SsiI	CCGC	3 cut(s)	147, 521, 887
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	301, 349
TaaI	ACNGT	2 cut(s)	673, 969
TaiI	ACGT	3 cut(s)	193, 508, 750
TaqI	TCGA	6 cut(s)	12, 165, 227, 342, 916, 920
TasI	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 926
TauI	GCSGC	2 cut(s)	523, 889
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	2 cut(s)	333, 509
Tru9I	TTAA	2 cut(s)	333, 509
TscAI	CASTG	2 cut(s)	678, 972
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	266, 962
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	731
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	2 cut(s)	678, 972
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	4 cut(s)	558, 615, 633, 790
XceI	RCATGY	1 cut(s)	942
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	926
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.