Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

3059943 .. 3064653

Gene Structure 4711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G043000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGATCATAGAAAGGATCAAAGAAATTGAGGCCGAAATGGCGCGGACTCAGAAAAACAAAGCCACAGAGTATCATCTTGGCCAGCTCAAGGCAAAGATTGCCAAGCTAAGGACTCAGCTCCTGGAGCCTCCAAAGGGGTCTAGTGGAGGTGGAGATGGTTTTGAAGTTACAAAATTTGGCCACGGACGTGTTGCGCTCATTGGGTTTCCAAGTGTGGGGAAGTCAACACTTTTGACAATGTTGACGGGCACACACTCCGAAGCTGCATCTTATGAGTTCACAACACTTACCTGCATTCCTGGAATTATCCATTACAATGATACAAAAATTCAGCTGCTTGATCTTCCTGGAATTATTGAAGGTGCTTCTGAAGGCAAAGGTCGTGGGAGGCAGGTTATTGCTGTTGCCAAGTCTTCAGATATTGTGTTGATGGTCCTTGATGCCTCAAAAAGTGAGGGTCATCGGCAAATATTGACAAAGGAGCTGGAAGCTGTTGGTTTACGTTTAAACAAGAGACCGCCTCAAATATACTTCAAAAAGAAAAAGACCGGGGGAATTTCTTTCAACAGCACTCTTACTTTGACTCATGTGGACGAGAAGCTTTGTTATCAAATTCTACACGAATACAAAATTCACAATGCTGAGTTGCTCTTTCGTGAGGATGCCACAGTGGATGATCTTATTGATGTCATTGAGGGAAACCGGAAATACATGAAGTGTGTATATGTTTACAACAAAATAGATGTTATTGGTATTGACGATGTGGACAAATTAGCCCGCCAACCTAATTCTGTTGTCATTAGCTGCAATCTCAAGCTGAACTTTGACAGACTGCTTGCAAAGATGTGGGAGGAGATGGGACTTGTTAGAGTTTATACAAAGCCACAGGGCCAGCAACCTGATTTCGGTGACCCTGTAGTTCTTTCTGCTGATAGAGGGGGTTGCTCCGTTGGAGACTTTTGTAACCACATACACAGGAGTTTGATGAAGGAAGTAAAATATGTGCTAGTGTGGGGTACAAGTGCAAGGCACTACCCACAGCATTGTGGCCTCGGTCATGTTTTGAATGATGAAGACGTGGTTCAGATTGTAAAGAAAAAGGATAAGGAAGGGGAAGGGAGGGGTCGGTTCAAGTCACATTCAACAGCCCCCGCTCGTATATCTGACAGAGAGAAGAAGGCTCCTCTGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

400

Amino Acids

44.46

Weight (kDa)

9.07

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 385
AccBSI	CCGCTC	1 cut(s)	1157
AccII	CGCG	1 cut(s)	46
AciI	CCGC	4 cut(s)	46, 521, 781, 1155
AclWI	GGATC	2 cut(s)	14, 26
AcoI	YGGCCR	2 cut(s)	82, 181
AcsI	RAATTY	5 cut(s)	176, 330, 558, 615, 633
AcuI	CTGAAG	2 cut(s)	393, 402
AfaI	GTAC	1 cut(s)	1021
AfiI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
AflIII	ACRYGT	1 cut(s)	190
AgsI	TTSAA	7 cut(s)	167, 362, 538, 568, 1069, 1135, 1146
AjiI	CACGTC	2 cut(s)	191, 1081
AjnI	CCWGG	3 cut(s)	123, 301, 349
AleI	CACNNNNGTG	1 cut(s)	189
Alw26I	GTCTC	2 cut(s)	511, 951
AlwI	GGATC	2 cut(s)	14, 26
AlwNI	CAGNNNCTG	1 cut(s)	124
AoxI	GGCC	5 cut(s)	33, 82, 181, 892, 1051
ApeKI	GCWGC	3 cut(s)	266, 337, 807
ApoI	RAATTY	5 cut(s)	176, 330, 558, 615, 633
AspLEI	GCGC	2 cut(s)	46, 199
AspS9I	GGNCC	2 cut(s)	436, 892
AsuC2I	CCSGG	1 cut(s)	553
AsuHPI	GGTGA	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	2 cut(s)	84, 183
BbsI	GAAGAC	2 cut(s)	408, 1083
BbvI	GCAGC	3 cut(s)	253, 324, 794
BccI	CCATC	3 cut(s)	152, 427, 853
BciT130I	CCWGG	3 cut(s)	125, 303, 351
BcnI	CCSGG	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	511, 951
BfaI	CTAG	2 cut(s)	144, 1010
BfmI	CTRYAG	1 cut(s)	918
BfuAI	ACCTGC	2 cut(s)	302, 385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	267, 338, 808
BlsI	GCNGC	3 cut(s)	268, 339, 809
Bme1390I	CCNGG	4 cut(s)	125, 303, 351, 553
Bme18I	GGWCC	1 cut(s)	436
BmgBI	CACGTC	2 cut(s)	191, 1081
BmgT120I	GGNCC	2 cut(s)	436, 892
BmiI	GGNNCC	2 cut(s)	129, 1185
BmrFI	CCNGG	4 cut(s)	125, 303, 351, 553
BmsI	GCATC	3 cut(s)	278, 433, 655
BpiI	GAAGAC	2 cut(s)	408, 1083
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
BpmI	CTGGAG	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	110
BpuEI	CTTGAG	2 cut(s)	74, 800
BpuMI	CCSGG	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	511
BsaJI	CCNNGG	3 cut(s)	184, 552, 1054
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BseBI	CCWGG	3 cut(s)	125, 303, 351
BseDI	CCNNGG	3 cut(s)	184, 552, 1054
BseGI	GGATG	2 cut(s)	670, 682
BseLI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BseMII	CTCAG	3 cut(s)	65, 131, 636
BseRI	GAGGAG	2 cut(s)	869, 1176
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	253, 324, 794
Bsh1236I	CGCG	1 cut(s)	46
BshFI	GGCC	5 cut(s)	35, 84, 183, 894, 1053
BsiSI	CCGG	2 cut(s)	552, 706
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BsmAI	GTCTC	2 cut(s)	511, 951
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	5 cut(s)	35, 84, 183, 894, 1053
Bso31I	GGTCTC	1 cut(s)	511
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	6, 18, 343, 679
BspACI	CCGC	4 cut(s)	46, 521, 781, 1155
BspANI	GGCC	5 cut(s)	35, 84, 183, 894, 1053
BspCNI	CTCAG	3 cut(s)	64, 130, 637
BspFNI	CGCG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	129, 1185
BspMI	ACCTGC	2 cut(s)	302, 385
BspPI	GGATC	2 cut(s)	14, 26
BspTNI	GGTCTC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	1157
BssECI	CCNNGG	3 cut(s)	184, 552, 1054
BssMI	GATC	4 cut(s)	6, 18, 343, 679
Bst2UI	CCWGG	3 cut(s)	125, 303, 351
Bst4CI	ACNGT	1 cut(s)	673
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	4 cut(s)	86, 781, 840, 896
BstDEI	CTNAG	4 cut(s)	51, 110, 117, 645
BstDSI	CCRYGG	1 cut(s)	184
BstEII	GGTNACC	1 cut(s)	911
BstF5I	GGATG	2 cut(s)	670, 682
BstFNI	CGCG	1 cut(s)	46
BstHHI	GCGC	2 cut(s)	46, 199
BstKTI	GATC	4 cut(s)	9, 21, 346, 682
BstMAI	GTCTC	2 cut(s)	511, 951
BstMBI	GATC	4 cut(s)	6, 18, 343, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
BstNI	CCWGG	3 cut(s)	125, 303, 351
BstPI	GGTNACC	1 cut(s)	911
BstSCI	CCNGG	4 cut(s)	123, 301, 349, 551
BstSFI	CTRYAG	1 cut(s)	918
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	1 cut(s)	46
BstV1I	GCAGC	3 cut(s)	253, 324, 794
BstV2I	GAAGAC	2 cut(s)	408, 1083
BsuRI	GGCC	5 cut(s)	35, 84, 183, 894, 1053
BtgI	CCRYGG	1 cut(s)	184
BtrI	CACGTC	2 cut(s)	191, 1081
BtsCI	GGATG	2 cut(s)	670, 682
BtsIMutI	CAGTG	1 cut(s)	678
BveI	ACCTGC	2 cut(s)	302, 385
Cac8I	GCNNGC	4 cut(s)	86, 781, 840, 896
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	2 cut(s)	46, 199
Cfr13I	GGNCC	2 cut(s)	436, 892
Csp6I	GTAC	1 cut(s)	1020
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	3 cut(s)	590, 715, 1061
CviQI	GTAC	1 cut(s)	1020
DdeI	CTNAG	4 cut(s)	51, 110, 117, 645
DpnI	GATC	4 cut(s)	8, 20, 345, 681
DpnII	GATC	4 cut(s)	6, 18, 343, 679
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	82, 181
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	393, 402
Eco91I	GGTNACC	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	911
EcoRII	CCWGG	3 cut(s)	123, 301, 349
FaeI	CATG	3 cut(s)	593, 718, 1064
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	3 cut(s)	589, 714, 1060
FauI	CCCGC	2 cut(s)	788, 1162
Fnu4HI	GCNGC	3 cut(s)	267, 338, 808
FokI	GGATG	2 cut(s)	677, 689
Fsp4HI	GCNGC	3 cut(s)	267, 338, 808
FspBI	CTAG	2 cut(s)	144, 1010
GlaI	GCGC	2 cut(s)	45, 198
GluI	GCNGC	3 cut(s)	267, 338, 808
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	5 cut(s)	35, 84, 183, 894, 1053
HapII	CCGG	2 cut(s)	552, 706
HhaI	GCGC	2 cut(s)	46, 199
Hin1II	CATG	3 cut(s)	593, 718, 1064
Hin6I	GCGC	2 cut(s)	44, 197
HinP1I	GCGC	2 cut(s)	44, 197
HincII	GTYRAC	2 cut(s)	228, 246
HindII	GTYRAC	2 cut(s)	228, 246
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	49, 115, 586
HpaII	CCGG	2 cut(s)	552, 706
HphI	GGTGA	1 cut(s)	923
Hpy166II	GTNNAC	7 cut(s)	228, 246, 282, 503, 595, 733, 769
Hpy188I	TCNGA	7 cut(s)	54, 262, 373, 421, 1089, 1168, 1191
Hpy188III	TCNNGA	1 cut(s)	659
Hpy8I	GTNNAC	7 cut(s)	228, 246, 282, 503, 595, 733, 769
HpyAV	CCTTC	6 cut(s)	356, 368, 985, 1106, 1112, 1174
HpyCH4III	ACNGT	1 cut(s)	673
HpyCH4IV	ACGT	3 cut(s)	190, 505, 1080
HpyCH4V	TGCA	5 cut(s)	269, 297, 810, 842, 1028
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
HpyF3I	CTNAG	4 cut(s)	51, 110, 117, 645
HpySE526I	ACGT	3 cut(s)	190, 505, 1080
Hsp92II	CATG	3 cut(s)	593, 718, 1064
HspAI	GCGC	2 cut(s)	44, 197
Kzo9I	GATC	4 cut(s)	6, 18, 343, 679
LmnI	GCTCC	5 cut(s)	126, 127, 484, 953, 1189
Lsp1109I	GCAGC	3 cut(s)	253, 324, 794
LweI	GCATC	3 cut(s)	278, 433, 655
MaeI	CTAG	2 cut(s)	144, 1010
MaeII	ACGT	3 cut(s)	190, 505, 1080
MaeIII	GTNAC	4 cut(s)	169, 911, 965, 1137
MalI	GATC	4 cut(s)	8, 20, 345, 681
MbiI	CCGCTC	1 cut(s)	1157
MboI	GATC	4 cut(s)	6, 18, 343, 679
MboII	GAAGA	4 cut(s)	338, 408, 1088, 1189
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	2 cut(s)	84, 183
MluNI	TGGCCA	2 cut(s)	84, 183
MlyI	GAGTC	3 cut(s)	43, 109, 580
MmeI	TCCRAC	1 cut(s)	934
Mox20I	TGGCCA	2 cut(s)	84, 183
MscI	TGGCCA	2 cut(s)	84, 183
MseI	TTAA	1 cut(s)	509
MslI	CAYNNNNRTG	2 cut(s)	189, 318
Msp20I	TGGCCA	2 cut(s)	84, 183
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	2 cut(s)	552, 706
MspR9I	CCNGG	4 cut(s)	125, 303, 351, 553
MssI	GTTTAAAC	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	3 cut(s)	125, 303, 351
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	3 cut(s)	41, 101, 127
NciI	CCSGG	1 cut(s)	553
NdeII	GATC	4 cut(s)	6, 18, 343, 679
NlaIII	CATG	3 cut(s)	593, 718, 1064
NlaIV	GGNNCC	2 cut(s)	129, 1185
NmuCI	GTSAC	2 cut(s)	911, 1137
OliI	CACNNNNGTG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	297
PfoI	TCCNGGA	3 cut(s)	123, 301, 349
PkrI	GCNGC	3 cut(s)	268, 339, 809
PleI	GAGTC	3 cut(s)	43, 109, 580
PmeI	GTTTAAAC	1 cut(s)	510
PpsI	GAGTC	3 cut(s)	43, 109, 580
Psp6I	CCWGG	3 cut(s)	123, 301, 349
PspEI	GGTNACC	1 cut(s)	911
PspGI	CCWGG	3 cut(s)	123, 301, 349
PspN4I	GGNNCC	2 cut(s)	129, 1185
PspPI	GGNCC	2 cut(s)	436, 892
PstNI	CAGNNNCTG	1 cut(s)	124
PvuII	CAGCTG	1 cut(s)	337
RsaI	GTAC	1 cut(s)	1021
RsaNI	GTAC	1 cut(s)	1020
RseI	CAYNNNNRTG	2 cut(s)	189, 318
SaqAI	TTAA	1 cut(s)	509
SatI	GCNGC	3 cut(s)	267, 338, 808
Sau3AI	GATC	4 cut(s)	6, 18, 343, 679
Sau96I	GGNCC	2 cut(s)	436, 892
SchI	GAGTC	3 cut(s)	43, 109, 580
ScrFI	CCNGG	4 cut(s)	125, 303, 351, 553
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	3 cut(s)	278, 433, 655
SfcI	CTRYAG	1 cut(s)	918
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	189, 318
SmlI	CTYRAG	2 cut(s)	89, 815
SmoI	CTYRAG	2 cut(s)	89, 815
SsiI	CCGC	4 cut(s)	46, 521, 781, 1155
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	2 cut(s)	144, 1010
StyD4I	CCNGG	4 cut(s)	123, 301, 349, 551
TaaI	ACNGT	1 cut(s)	673
TaiI	ACGT	3 cut(s)	193, 508, 1083
TaqII	GACCGA	1 cut(s)	1046
Tru1I	TTAA	1 cut(s)	509
Tru9I	TTAA	1 cut(s)	509
TscAI	CASTG	1 cut(s)	678
TseFI	GTSAC	2 cut(s)	911, 1137
TseI	GCWGC	3 cut(s)	266, 337, 807
Tsp45I	GTSAC	2 cut(s)	911, 1137
TspDTI	ATGAA	3 cut(s)	731, 1004, 1089
TspGWI	ACGGA	2 cut(s)	201, 940
TspRI	CASTG	1 cut(s)	678
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	5 cut(s)	176, 330, 558, 615, 633
XspI	CTAG	2 cut(s)	144, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.