Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008515

Physical Location & Seq

Genomic Coordinates Forward (+)

16021366 .. 16025413

Gene Structure 4048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1184900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGATCATCGAAAGGATCAAGGAAATTGAGGCCGAAATGGCTCGGACTCAGAAAAATAAAGCCACAGAGTATCATCTTGGCCAGCTCAAGGCAAAGATTGCCAAGCTCAGGACTCAGCTTTTGGAGCCTCCAAAAGGGTCTAGCGGAGGTGGAGATGGTTTCGAAGTTACAAAGTTTGGTCACGGACGTGTTGCGCTTATTGGGTTTCCAAGTGTGGGGAAGTCGACACTTTTGACTATGTTGACGGGCACACACTCTGAAGCTGCATCTTATGAGTTCACAACTCTTACCTGCATTCCTGGGATTATACATTACAATGATACAAAAATTCAGCTGCTCGATCTTCCTGGAATTATTGAAGGTGCTTCAGAAGGCAAAGGTCGTGGGAGGCAGGTTATTGCTGTTGCCAAGTCTTCAGATATTGTTTTGATGGTCCTTGATGCCTCAAAAAGTGAAGGTCATCGGCAAATATTGACAAAGGAGCTGGAAGCTGTGGGCCTACGTTTAAACAAGAAGCCGCCTCAAATATACTTCAAAAAGAAAAAGACTGGAGGAATTTCTTTCAACAGCACTTGCACTTTGACTCATGTGGATGAGAAGCTTTGTTATCAAATTCTACACGAATACAAAATTCACAATGCTGAGTTGCTGTTTCGCGAGGACGCGACAGTGGATGATCTTATTGATGTGATTGAGGGAAACCGGAAATACATGAAGTGTGTATATGTGTACAACAAGATAGACGTTATTGGTATTGATGATGTGGACAAATTAGCCCGTCAGCCGAATTCTGTTGTCATTAGTTGCAATCTCAAGCTGAACTTTGACAGACTGCTTGCAAAAATGTGGGAAGAGATGGGACTTGTTAGAGTTTATACAAAGCCGCAGGGCCAGCAACCTGATTTCGGTGATCCAGTAGTTCTTTCTGCTGATAGAGGGGGCTGCACTGTTGGAGACTTCTGTAATCATATACACAGGAGTTTGGTGAAGGAAGTAAAATACGTGTTAGTGTGGGGTACAAGTGCAAGGCATTACCCACAGCATTGTGGCCTCGGTAATGTTTTGAATGATGAAGACGTGGTCCAAATTGTGAAGAAAAAGGACAAGGAAGGGGAAGGGAGGGGTCGGTTTAAATCACATTCAACGGACCCTGCTCGTATATCTGACAGAGTGAAGAAGGCCCCCCTGAAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008289 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019003 GO:0031410 GO:0031982 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:0097367 GO:0097708 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1 MMR_HSR1_Xtn TGS

Protein Analysis

400

Amino Acids

44.4

Weight (kDa)

9.03

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	64 - 181	4.8e-24	50S ribosome-binding GTPase
FeoB_N	PF02421	64 - 159	2.7e-12	Ferrous iron transport protein B
MMR_HSR1_Xtn	PF16897	184 - 289	1.1e-41	C-terminal region of MMR_HSR1 domain
TGS	PF02824	290 - 366	8.1e-19	TGS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17470 AT1G17470 AT1G72660 AT1G72660 AT1G72660 AT1G72660
fragaria_vesca	FvH4_6g34550
malus_domestica	MD09G1184900.v1.1 MD17G1168800.v1.1
prunus_persica	Prupe.3G043000_v2.0.a1 Prupe.3G043000_v2.0.a1
pyrus_communis	pycom09g10250 pycom17g16710
rosa_chinensis	RchiOBHm_Chr2g0145081
rosa_laevigata	RLG00000020123
rosa_multiflora	Rmu_sc0002506.1_g000023 Rmu_sc0017273.1_g000007
rosa_roxburghii	Rroxscaffold_2G00100890
rosa_rugosa	Rorug02G0390200 Rorug02G0390200
rosa_samantha	Rh2BG453800 Rh2CG429800
rosa_wichuraiana	Rw2G036190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	302, 385
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	2 cut(s)	660, 668
AciI	CCGC	3 cut(s)	147, 521, 887
AclWI	GGATC	3 cut(s)	14, 26, 908
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	5 cut(s)	330, 558, 615, 633, 790
AcuI	CTGAAG	3 cut(s)	282, 354, 402
AfaI	GTAC	2 cut(s)	734, 1021
AfiI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
AflIII	ACRYGT	2 cut(s)	190, 1005
AgsI	TTSAA	5 cut(s)	362, 538, 568, 1069, 1146
AjiI	CACGTC	2 cut(s)	191, 1081
AjnI	CCWGG	2 cut(s)	301, 349
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	9 cut(s)	88, 109, 121, 266, 337, 487, 494, 604, 820
AluI	AGCT	9 cut(s)	88, 109, 121, 266, 337, 487, 494, 604, 820
Alw26I	GTCTC	1 cut(s)	951
AlwI	GGATC	3 cut(s)	14, 26, 908
AoxI	GGCC	6 cut(s)	33, 82, 499, 892, 1051, 1182
ApeKI	GCWGC	3 cut(s)	266, 337, 945
ApoI	RAATTY	5 cut(s)	330, 558, 615, 633, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	6 cut(s)	436, 499, 892, 1084, 1150, 1183
AsuHPI	GGTGA	2 cut(s)	923, 1000
AsuII	TTCGAA	1 cut(s)	165
AvaII	GGWCC	3 cut(s)	436, 1084, 1150
BaeGI	GKGCMC	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	84
BbsI	GAAGAC	2 cut(s)	408, 1083
BbvI	GCAGC	3 cut(s)	253, 324, 932
BccI	CCATC	3 cut(s)	152, 427, 853
BciT130I	CCWGG	2 cut(s)	303, 351
BcoDI	GTCTC	1 cut(s)	951
BfaI	CTAG	1 cut(s)	144
BfuAI	ACCTGC	2 cut(s)	302, 385
BglI	GCCNNNNNGGC	1 cut(s)	41
BisI	GCNGC	5 cut(s)	267, 338, 521, 887, 946
BlsI	GCNGC	5 cut(s)	268, 339, 522, 888, 947
Bme1390I	CCNGG	2 cut(s)	303, 351
Bme18I	GGWCC	3 cut(s)	436, 1084, 1150
BmgBI	CACGTC	2 cut(s)	191, 1081
BmgT120I	GGNCC	6 cut(s)	436, 499, 892, 1084, 1150, 1183
BmiI	GGNNCC	3 cut(s)	129, 1152, 1185
BmrFI	CCNGG	2 cut(s)	303, 351
BmsI	GCATC	2 cut(s)	278, 433
BpiI	GAAGAC	2 cut(s)	408, 1083
BpmI	CTGGAG	1 cut(s)	573
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu14I	TTCGAA	1 cut(s)	165
BpuEI	CTTGAG	2 cut(s)	74, 800
BsaAI	YACGTR	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	302, 1054
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
Bse1I	ACTGG	2 cut(s)	556, 917
BseBI	CCWGG	2 cut(s)	303, 351
BseDI	CCNNGG	2 cut(s)	302, 1054
BseGI	GGATG	2 cut(s)	601, 682
BseLI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BseMII	CTCAG	4 cut(s)	65, 124, 131, 636
BseNI	ACTGG	2 cut(s)	556, 917
BseSI	GKGCMC	1 cut(s)	254
BseXI	GCAGC	3 cut(s)	253, 324, 932
BsgI	GTGCAG	1 cut(s)	931
Bsh1236I	CGCG	2 cut(s)	660, 668
BshFI	GGCC	6 cut(s)	35, 84, 501, 894, 1053, 1184
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	876
BslI	CCNNNNNNNGG	5 cut(s)	91, 111, 137, 218, 908
BsmAI	GTCTC	1 cut(s)	951
BsmFI	GGGAC	1 cut(s)	876
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	6 cut(s)	35, 84, 501, 894, 1053, 1184
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	5 cut(s)	6, 18, 343, 679, 913
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	3 cut(s)	147, 521, 887
BspANI	GGCC	6 cut(s)	35, 84, 501, 894, 1053, 1184
BspCNI	CTCAG	4 cut(s)	64, 123, 130, 637
BspFNI	CGCG	2 cut(s)	660, 668
BspLI	GGNNCC	3 cut(s)	129, 1152, 1185
BspMI	ACCTGC	2 cut(s)	302, 385
BspPI	GGATC	3 cut(s)	14, 26, 908
BspT104I	TTCGAA	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	556, 917
BssECI	CCNNGG	2 cut(s)	302, 1054
BssMI	GATC	5 cut(s)	6, 18, 343, 679, 913
Bst2UI	CCWGG	2 cut(s)	303, 351
Bst4CI	ACNGT	2 cut(s)	673, 952
Bst6I	CTCTTC	1 cut(s)	849
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	1006
BstBI	TTCGAA	1 cut(s)	165
BstC8I	GCNNGC	3 cut(s)	86, 840, 896
BstDEI	CTNAG	4 cut(s)	51, 110, 117, 645
BstENI	CCTNNNNNAGG	1 cut(s)	135
BstF5I	GGATG	2 cut(s)	601, 682
BstFNI	CGCG	2 cut(s)	660, 668
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	5 cut(s)	9, 21, 346, 682, 916
BstMAI	GTCTC	1 cut(s)	951
BstMBI	GATC	5 cut(s)	6, 18, 343, 679, 913
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
BstNI	CCWGG	2 cut(s)	303, 351
BstSCI	CCNGG	2 cut(s)	301, 349
BstSLI	GKGCMC	1 cut(s)	254
BstUI	CGCG	2 cut(s)	660, 668
BstV1I	GCAGC	3 cut(s)	253, 324, 932
BstV2I	GAAGAC	2 cut(s)	408, 1083
BsuRI	GGCC	6 cut(s)	35, 84, 501, 894, 1053, 1184
BtrI	CACGTC	2 cut(s)	191, 1081
BtsCI	GGATG	2 cut(s)	601, 682
BtsIMutI	CAGTG	2 cut(s)	678, 948
BtuMI	TCGCGA	1 cut(s)	660
BveI	ACCTGC	2 cut(s)	302, 385
Cac8I	GCNNGC	3 cut(s)	86, 840, 896
CfoI	GCGC	1 cut(s)	199
Cfr13I	GGNCC	6 cut(s)	436, 499, 892, 1084, 1150, 1183
CseI	GACGC	1 cut(s)	674
Csp6I	GTAC	2 cut(s)	733, 1020
CspCI	CAANNNNNGTGG	2 cut(s)	367, 402
CviAII	CATG	2 cut(s)	590, 715
CviQI	GTAC	2 cut(s)	733, 1020
DdeI	CTNAG	4 cut(s)	51, 110, 117, 645
DpnI	GATC	5 cut(s)	8, 20, 345, 681, 915
DpnII	GATC	5 cut(s)	6, 18, 343, 679, 913
DraI	TTTAAA	2 cut(s)	510, 1135
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	849
EarI	CTCTTC	1 cut(s)	849
Eco47I	GGWCC	3 cut(s)	436, 1084, 1150
Eco57I	CTGAAG	3 cut(s)	282, 354, 402
EcoNI	CCTNNNNNAGG	1 cut(s)	135
EcoO109I	RGGNCCY	1 cut(s)	1183
EcoRI	GAATTC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	301, 349
FaeI	CATG	2 cut(s)	593, 718
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	876
FatI	CATG	2 cut(s)	589, 714
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	5 cut(s)	267, 338, 521, 887, 946
FokI	GGATG	2 cut(s)	608, 689
Fsp4HI	GCNGC	5 cut(s)	267, 338, 521, 887, 946
FspBI	CTAG	1 cut(s)	144
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	5 cut(s)	267, 338, 521, 887, 946
GsuI	CTGGAG	1 cut(s)	573
HaeIII	GGCC	6 cut(s)	35, 84, 501, 894, 1053, 1184
HapII	CCGG	1 cut(s)	706
HgaI	GACGC	1 cut(s)	674
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	593, 718
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	2 cut(s)	228, 246
HindII	GTYRAC	2 cut(s)	228, 246
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	49, 115, 586
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	2 cut(s)	923, 1000
Hpy166II	GTNNAC	5 cut(s)	228, 246, 282, 733, 769
Hpy188I	TCNGA	6 cut(s)	48, 54, 262, 373, 421, 1168
Hpy188III	TCNNGA	2 cut(s)	112, 659
Hpy8I	GTNNAC	5 cut(s)	228, 246, 282, 733, 769
HpyAV	CCTTC	7 cut(s)	356, 368, 452, 985, 1106, 1112, 1174
HpyCH4III	ACNGT	2 cut(s)	673, 952
HpyCH4IV	ACGT	5 cut(s)	190, 505, 747, 1005, 1080
HpyCH4V	TGCA	7 cut(s)	269, 297, 579, 810, 842, 948, 1028
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
HpyF3I	CTNAG	4 cut(s)	51, 110, 117, 645
HpySE526I	ACGT	5 cut(s)	190, 505, 747, 1005, 1080
Hsp92II	CATG	2 cut(s)	593, 718
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	5 cut(s)	6, 18, 343, 679, 913
LmnI	GCTCC	2 cut(s)	127, 484
Lsp1109I	GCAGC	3 cut(s)	253, 324, 932
LweI	GCATC	2 cut(s)	278, 433
MaeI	CTAG	1 cut(s)	144
MaeII	ACGT	5 cut(s)	190, 505, 747, 1005, 1080
MaeIII	GTNAC	2 cut(s)	169, 182
MalI	GATC	5 cut(s)	8, 20, 345, 681, 915
MboI	GATC	5 cut(s)	6, 18, 343, 679, 913
MboII	GAAGA	6 cut(s)	338, 408, 866, 1088, 1108, 1189
MhlI	GDGCHC	1 cut(s)	254
MlsI	TGGCCA	1 cut(s)	84
MluCI	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 1089
MluNI	TGGCCA	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	43, 109, 580
MmeI	TCCRAC	1 cut(s)	934
Mox20I	TGGCCA	1 cut(s)	84
MscI	TGGCCA	1 cut(s)	84
MseI	TTAA	2 cut(s)	509, 1134
MslI	CAYNNNNRTG	3 cut(s)	189, 318, 594
Msp20I	TGGCCA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	303, 351
MssI	GTTTAAAC	1 cut(s)	510
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	2 cut(s)	303, 351
MvnI	CGCG	2 cut(s)	660, 668
MwoI	GCNNNNNNNGC	4 cut(s)	41, 101, 127, 895
NdeII	GATC	5 cut(s)	6, 18, 343, 679, 913
NlaIII	CATG	2 cut(s)	593, 718
NlaIV	GGNNCC	3 cut(s)	129, 1152, 1185
NmuCI	GTSAC	1 cut(s)	182
NruI	TCGCGA	1 cut(s)	660
NspV	TTCGAA	1 cut(s)	165
OliI	CACNNNNGTG	1 cut(s)	189
PctI	GAATGC	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	1082
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	5 cut(s)	268, 339, 522, 888, 947
PleI	GAGTC	3 cut(s)	43, 109, 580
PmeI	GTTTAAAC	1 cut(s)	510
PpsI	GAGTC	3 cut(s)	43, 109, 580
Ppu21I	YACGTR	1 cut(s)	1006
Psp6I	CCWGG	2 cut(s)	301, 349
PspGI	CCWGG	2 cut(s)	301, 349
PspN4I	GGNNCC	3 cut(s)	129, 1152, 1185
PspPI	GGNCC	6 cut(s)	436, 499, 892, 1084, 1150, 1183
PsyI	GACNNNGTC	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	337
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	2 cut(s)	734, 1021
RsaNI	GTAC	2 cut(s)	733, 1020
RseI	CAYNNNNRTG	3 cut(s)	189, 318, 594
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	2 cut(s)	509, 1134
SatI	GCNGC	5 cut(s)	267, 338, 521, 887, 946
Sau3AI	GATC	5 cut(s)	6, 18, 343, 679, 913
Sau96I	GGNCC	6 cut(s)	436, 499, 892, 1084, 1150, 1183
SchI	GAGTC	3 cut(s)	43, 109, 580
ScrFI	CCNGG	2 cut(s)	303, 351
SduI	GDGCHC	1 cut(s)	254
SfaNI	GCATC	2 cut(s)	278, 433
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	3 cut(s)	436, 1084, 1150
SmiMI	CAYNNNNRTG	3 cut(s)	189, 318, 594
SmlI	CTYRAG	2 cut(s)	89, 815
SmoI	CTYRAG	2 cut(s)	89, 815
Sse9I	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 1089
SsiI	CCGC	3 cut(s)	147, 521, 887
SspI	AATATT	1 cut(s)	474
SspMI	CTAG	1 cut(s)	144
StyD4I	CCNGG	2 cut(s)	301, 349
TaaI	ACNGT	2 cut(s)	673, 952
TaiI	ACGT	5 cut(s)	193, 508, 750, 1008, 1083
TaqI	TCGA	4 cut(s)	12, 165, 227, 342
TasI	AATT	9 cut(s)	27, 330, 354, 558, 615, 633, 773, 790, 1089
TatI	WGTACW	1 cut(s)	732
TauI	GCSGC	2 cut(s)	523, 889
Tru1I	TTAA	2 cut(s)	509, 1134
Tru9I	TTAA	2 cut(s)	509, 1134
TscAI	CASTG	2 cut(s)	678, 955
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	3 cut(s)	266, 337, 945
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	2 cut(s)	731, 1089
TspGWI	ACGGA	2 cut(s)	201, 1163
TspRI	CASTG	2 cut(s)	678, 955
Tth111I	GACNNNGTC	1 cut(s)	1082
VpaK11BI	GGWCC	3 cut(s)	436, 1084, 1150
XagI	CCTNNNNNAGG	1 cut(s)	135
XapI	RAATTY	5 cut(s)	330, 558, 615, 633, 790
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.