Rorug02G0390200
MYB Family

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
49878699 .. 49885229
6531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0390200.1

Sequence Viewer

Length: 1185 bp
ATGGGTTCCCATCTAAAACTTGCAAAGAGGGCTGTGGAGACTGATATGCCGGTCATGGTTCAGATACAACAATTGATCCGAGGAGCCAAAAATGCTGTGTCTCTGGCGCAGGGAGTAGTTCATTGGCAACCACCCAAACAGGCACTGGATAAGGTGAAAGAACTTGTATGGGAGCCTTCAATTAGTCGTTATGGTGCTGATGAAGGTATGCCTGAACTCAGGGAGGCATTGGTAAAAAAGTTGCAAGAGGAAAACAAGTTATGCAAATCTTCGGTTATGGTTACTGCAGGGGCAAATCAGGCATTTGTGAATCTTGTTCTTACATTGTGTGATGCTGGAGACTCTGTTGTCATGTTTGCACCATACTACTTCAATGCCTACATGTCCTTCCAGATGACTGGAGTTACTAATATACTTGTGGGTCCTGGTCAACCAGATACACTTTATCCAGATGCAGACTGGTTGGAGAAAACACTGTCAGAAACAAAACCAACCCCAAAACTTGTCACAGTTGTTAATCCTGGCAACCCATCTGGAACCTACATTCCAGAACCTCTTCTTAAGAGGATTTCAGATATTTGCAGAGAGGCTGGATCATGGCTTGTTGTGGACAATACATACGAGTATTTTATGTATGATGATTTAAAGCATTCTTGTGTGGAGGGTAATCACATTGTCAACATCTTTTCCTTCTCAAAAGCTTATGGGATGATGGGATGGCGAGTTGGCTATATAGCATACCCATCTGAAGCAGAGGGCTTTGGTACTCAACTCCTCAAAGTTCAAGATAACATTCCCATCTGTGCTTCAATACTTTCACAACATCTTGCCCTCTGCTCATTAGAAGTGGGACCTGAATGGGTTGTTGAAAGAGTGAAAGGTCTTGTCAAGAACAGAGAAATTGTTTTAGAAGCGCTCTCCCCACTCGGAAAACAGTCTGTTAAAGGTGGAGAAGGTGCTATATACCTGTGGGCCAAGCTTCCAGACAAATATGTAGATGACTTTGAAATTGTTCGCTGGCTTGCTCACAGGCATGGGGTGGTGGTGATTCCTGGAAGCGCATGTGGGTGCCCTGGAAATTTGAGAATCTCCTTTGGTGGCCTGTTAGAGGATGACTGCAAAGCTGCTGCAGACAGGCTGAGAAGAGGGTTAGAAGAATTGGTCAAAGATGGAATGGTCAAGTAA

Protein Analysis

394

Amino Acids

43.49

Weight (kDa)

5.89

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_1_2 PF00155 33 - 380 7.8e-51 Aminotransferase class I and II
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 1068
AclWI GGATC 2 cut(s) 70, 601
AcsI RAATTY 1 cut(s) 1078
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 1 cut(s) 766
AfeI AGCGCT 1 cut(s) 915
AfiI CCNNNNNNNGG 1 cut(s) 1108
AflII CTTAAG 1 cut(s) 560
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 6 cut(s) 180, 373, 785, 810, 869, 1007
AjnI CCWGG 4 cut(s) 424, 520, 1051, 1072
AloI GAACNNNNNNTCC 2 cut(s) 529, 561
AluBI AGCT 3 cut(s) 701, 979, 1124
AluI AGCT 3 cut(s) 701, 979, 1124
Alw26I GTCTC 3 cut(s) 32, 105, 333
AlwI GGATC 2 cut(s) 70, 601
AlwNI CAGNNNCTG 1 cut(s) 145
Aor51HI AGCGCT 1 cut(s) 915
AoxI GGCC 2 cut(s) 972, 1099
ApeKI GCWGC 2 cut(s) 1124, 1127
ApoI RAATTY 1 cut(s) 1078
Asp700I GAANNNNTTC 2 cut(s) 555, 1011
AspLEI GCGC 3 cut(s) 109, 916, 1061
AspS9I GGNCC 3 cut(s) 422, 851, 972
AsuHPI GGTGA 2 cut(s) 166, 1057
AvaII GGWCC 2 cut(s) 422, 851
BaeGI GKGCMC 1 cut(s) 1073
BanI GGYRCC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 1111, 1114
BccI CCATC 7 cut(s) 18, 538, 706, 711, 751, 806, 1163
BciT130I CCWGG 4 cut(s) 426, 522, 1053, 1074
BcoDI GTCTC 3 cut(s) 32, 105, 333
BfmI CTRYAG 2 cut(s) 285, 1128
BfoI RGCGCY 1 cut(s) 917
BfrI CTTAAG 1 cut(s) 560
BisI GCNGC 2 cut(s) 1125, 1128
BlsI GCNGC 2 cut(s) 1126, 1129
Bme1390I CCNGG 4 cut(s) 426, 522, 1053, 1074
Bme18I GGWCC 2 cut(s) 422, 851
BmgT120I GGNCC 3 cut(s) 422, 851, 972
BmiI GGNNCC 7 cut(s) 7, 85, 174, 423, 538, 852, 1070
BmrFI CCNGG 4 cut(s) 426, 522, 1053, 1074
BmsI GCATC 2 cut(s) 322, 442
BpmI CTGGAG 2 cut(s) 357, 420
BsaJI CCNNGG 2 cut(s) 79, 1072
BsaXI ACNNNNNCTCC 2 cut(s) 330, 360
Bsc4I CCNNNNNNNGG 1 cut(s) 1108
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 3 cut(s) 150, 403, 464
BseBI CCWGG 4 cut(s) 426, 522, 1053, 1074
BseDI CCNNGG 2 cut(s) 79, 1072
BseGI GGATG 3 cut(s) 714, 722, 1117
BseLI CCNNNNNNNGG 1 cut(s) 1108
BseMII CTCAG 2 cut(s) 232, 1130
BseNI ACTGG 3 cut(s) 150, 403, 464
BseRI GAGGAG 2 cut(s) 96, 764
BseSI GKGCMC 1 cut(s) 1073
BseXI GCAGC 2 cut(s) 1111, 1114
BshFI GGCC 2 cut(s) 974, 1101
BshNI GGYRCC 1 cut(s) 1068
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 864
BslI CCNNNNNNNGG 1 cut(s) 1108
BsmAI GTCTC 3 cut(s) 32, 105, 333
BsmFI GGGAC 1 cut(s) 864
BsmI GAATGC 1 cut(s) 649
BsnI GGCC 2 cut(s) 974, 1101
Bsp1286I GDGCHC 1 cut(s) 1073
Bsp143I GATC 2 cut(s) 75, 593
BspANI GGCC 2 cut(s) 974, 1101
BspCNI CTCAG 2 cut(s) 231, 1131
BspLI GGNNCC 7 cut(s) 7, 85, 174, 423, 538, 852, 1070
BspMAI CTGCAG 2 cut(s) 289, 1132
BspPI GGATC 2 cut(s) 70, 601
BspT107I GGYRCC 1 cut(s) 1068
BspTI CTTAAG 1 cut(s) 560
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 3 cut(s) 150, 403, 464
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 2 cut(s) 79, 1072
BssMI GATC 2 cut(s) 75, 593
Bst2UI CCWGG 4 cut(s) 426, 522, 1053, 1074
Bst4CI ACNGT 3 cut(s) 477, 511, 936
Bst6I CTCTTC 2 cut(s) 561, 1138
BstAFI CTTAAG 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 1019, 1023
BstDEI CTNAG 2 cut(s) 218, 1139
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 3 cut(s) 714, 722, 1117
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 3 cut(s) 109, 916, 1061
BstKTI GATC 2 cut(s) 78, 596
BstMAI GTCTC 3 cut(s) 32, 105, 333
BstMBI GATC 2 cut(s) 75, 593
BstMWI GCNNNNNNNGC 3 cut(s) 29, 92, 299
BstNI CCWGG 4 cut(s) 426, 522, 1053, 1074
BstNSI RCATGY 2 cut(s) 385, 1065
BstSCI CCNGG 4 cut(s) 424, 520, 1051, 1072
BstSFI CTRYAG 2 cut(s) 285, 1128
BstSLI GKGCMC 1 cut(s) 1073
BstV1I GCAGC 2 cut(s) 1111, 1114
BstXI CCANNNNNNTGG 1 cut(s) 398
BsuRI GGCC 2 cut(s) 974, 1101
BtsCI GGATG 3 cut(s) 714, 722, 1117
BtsIMutI CAGTG 2 cut(s) 143, 473
Cac8I GCNNGC 2 cut(s) 1019, 1023
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 3 cut(s) 109, 916, 1061
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 3 cut(s) 422, 851, 972
Csp6I GTAC 1 cut(s) 765
CviAII CATG 6 cut(s) 55, 352, 382, 597, 1034, 1062
CviQI GTAC 1 cut(s) 765
DdeI CTNAG 2 cut(s) 218, 1139
DpnI GATC 2 cut(s) 77, 595
DpnII GATC 2 cut(s) 75, 593
DraI TTTAAA 1 cut(s) 645
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
Eam1104I CTCTTC 2 cut(s) 561, 1138
EarI CTCTTC 2 cut(s) 561, 1138
Eco47I GGWCC 2 cut(s) 422, 851
Eco47III AGCGCT 1 cut(s) 915
Eco57I CTGAAG 1 cut(s) 768
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoO109I RGGNCCY 2 cut(s) 422, 851
EcoRII CCWGG 4 cut(s) 424, 520, 1051, 1072
FaeI CATG 6 cut(s) 58, 355, 385, 600, 1037, 1065
FaqI GGGAC 1 cut(s) 864
FatI CATG 6 cut(s) 54, 351, 381, 596, 1033, 1061
Fnu4HI GCNGC 2 cut(s) 1125, 1128
FokI GGATG 3 cut(s) 721, 729, 1124
Fsp4HI GCNGC 2 cut(s) 1125, 1128
GlaI GCGC 3 cut(s) 108, 915, 1060
GluI GCNGC 2 cut(s) 1125, 1128
GsuI CTGGAG 2 cut(s) 357, 420
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 2 cut(s) 974, 1101
HapII CCGG 1 cut(s) 50
HhaI GCGC 3 cut(s) 109, 916, 1061
Hin1II CATG 6 cut(s) 58, 355, 385, 600, 1037, 1065
Hin6I GCGC 3 cut(s) 107, 914, 1059
HinP1I GCGC 3 cut(s) 107, 914, 1059
HincII GTYRAC 2 cut(s) 431, 679
HindII GTYRAC 2 cut(s) 431, 679
HindIII AAGCTT 2 cut(s) 699, 977
HinfI GANTC 4 cut(s) 310, 341, 1048, 1086
HpaII CCGG 1 cut(s) 50
HphI GGTGA 2 cut(s) 166, 1057
Hpy166II GTNNAC 3 cut(s) 431, 610, 679
Hpy188I TCNGA 6 cut(s) 63, 80, 481, 574, 748, 929
Hpy188III TCNNGA 7 cut(s) 391, 449, 534, 548, 785, 889, 983
Hpy8I GTNNAC 3 cut(s) 431, 610, 679
HpyAV CCTTC 5 cut(s) 186, 197, 397, 700, 947
HpyCH4III ACNGT 3 cut(s) 477, 511, 936
HpyCH4V TGCA 9 cut(s) 23, 244, 264, 287, 359, 455, 582, 1119, 1130
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 92, 299
HpyF3I CTNAG 2 cut(s) 218, 1139
Hsp92II CATG 6 cut(s) 58, 355, 385, 600, 1037, 1065
HspAI GCGC 3 cut(s) 107, 914, 1059
Kzo9I GATC 2 cut(s) 75, 593
LmnI GCTCC 2 cut(s) 83, 172
Lsp1109I GCAGC 2 cut(s) 1111, 1114
LweI GCATC 2 cut(s) 322, 442
MaeIII GTNAC 3 cut(s) 280, 403, 505
MalI GATC 2 cut(s) 77, 595
MboI GATC 2 cut(s) 75, 593
MboII GAAGA 4 cut(s) 261, 548, 1155, 1166
MfeI CAATTG 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 1073
MluCI AATT 6 cut(s) 71, 180, 900, 1008, 1078, 1157
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 555, 1011
MseI TTAA 4 cut(s) 516, 561, 644, 942
MslI CAYNNNNRTG 3 cut(s) 654, 1032, 1066
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 4 cut(s) 426, 522, 1053, 1074
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 649
MvaI CCWGG 4 cut(s) 426, 522, 1053, 1074
MwoI GCNNNNNNNGC 3 cut(s) 29, 92, 299
NdeII GATC 2 cut(s) 75, 593
NlaIII CATG 6 cut(s) 58, 355, 385, 600, 1037, 1065
NlaIV GGNNCC 7 cut(s) 7, 85, 174, 423, 538, 852, 1070
NmuCI GTSAC 1 cut(s) 505
NspI RCATGY 2 cut(s) 385, 1065
PciI ACATGT 1 cut(s) 381
PctI GAATGC 1 cut(s) 649
PdmI GAANNNNTTC 2 cut(s) 555, 1011
PfeI GAWTC 3 cut(s) 310, 1048, 1086
PfoI TCCNGGA 1 cut(s) 1051
PkrI GCNGC 2 cut(s) 1126, 1129
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
PpuMI RGGWCCY 2 cut(s) 422, 851
PscI ACATGT 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 422, 851
Psp6I CCWGG 4 cut(s) 424, 520, 1051, 1072
PspGI CCWGG 4 cut(s) 424, 520, 1051, 1072
PspN4I GGNNCC 7 cut(s) 7, 85, 174, 423, 538, 852, 1070
PspPI GGNCC 3 cut(s) 422, 851, 972
PspPPI RGGWCCY 2 cut(s) 422, 851
PstI CTGCAG 2 cut(s) 289, 1132
PstNI CAGNNNCTG 1 cut(s) 145
RsaI GTAC 1 cut(s) 766
RsaNI GTAC 1 cut(s) 765
RseI CAYNNNNRTG 3 cut(s) 654, 1032, 1066
SaqAI TTAA 4 cut(s) 516, 561, 644, 942
SatI GCNGC 2 cut(s) 1125, 1128
Sau3AI GATC 2 cut(s) 75, 593
Sau96I GGNCC 3 cut(s) 422, 851, 972
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 4 cut(s) 426, 522, 1053, 1074
SduI GDGCHC 1 cut(s) 1073
SfaNI GCATC 2 cut(s) 322, 442
SfcI CTRYAG 2 cut(s) 285, 1128
SinI GGWCC 2 cut(s) 422, 851
SmiMI CAYNNNNRTG 3 cut(s) 654, 1032, 1066
SmlI CTYRAG 1 cut(s) 560
SmoI CTYRAG 1 cut(s) 560
Sse9I AATT 6 cut(s) 71, 180, 900, 1008, 1078, 1157
StyD4I CCNGG 4 cut(s) 424, 520, 1051, 1072
TaaI ACNGT 3 cut(s) 477, 511, 936
TasI AATT 6 cut(s) 71, 180, 900, 1008, 1078, 1157
TfiI GAWTC 3 cut(s) 310, 1048, 1086
Tru1I TTAA 4 cut(s) 516, 561, 644, 942
Tru9I TTAA 4 cut(s) 516, 561, 644, 942
TscAI CASTG 2 cut(s) 150, 480
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 2 cut(s) 1124, 1127
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 2 cut(s) 110, 216
TspRI CASTG 2 cut(s) 150, 480
Vha464I CTTAAG 1 cut(s) 560
VpaK11BI GGWCC 2 cut(s) 422, 851
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 1 cut(s) 1078
XceI RCATGY 2 cut(s) 385, 1065
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 456
XmnI GAANNNNTTC 2 cut(s) 555, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.