Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

66733211 .. 66752535

Gene Structure 19325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG462200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACAAGTCTTAGCTACATTGTTTACGTGTTGGCCAGCCTATTCAACCCAATTACCTTCCTTCTATACGGTCATCGTGATCATGGCGATCAGTACTACAGTAGTACTAGTATAGAACACAATCAAAGTAAGGTGGCGCTGTTTGTGTTTGGGGATTCACCATTTGAGGCTGGAAACGACCAATACCTAATTCCTAATGTTACCGTAGAAGATGATGAAGCAATAGCCTGGCCATATGGAATGACTTTCTTCCACCATCCTACTGGAAGATTCAGCGATGGGCGTATTGTCCCCGATTTTATCGCTAAGTTTGCAAAGCTGCCGATGCTTCCACCATACTTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTCGCTTCGGGTGGAGCCGGGGCCCTTGCAACAACCAACACAGGAACTGTGGCAGGTTTTCCAATGCAGTTGAGTTATTTTAGGAATGTGACAAAGTTGCTACAACAGAAACTGGGTCATTTAGAAGCCAAACGAATTCTGAGAAACGCTGTGTACTTGATAAGCATCGGTGGCTGTGATTATTTCAGCTTCTATGCTACAAACCCAAATGCGACCGAGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAACATTCGGTGTTACTGAAGGCTGCGTTGAAGGACTTCTGAGTTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATATGGGTTCACAAATGGGTCGGATGGATGCTGTGGTACAGGACCGTACAGGGGAGTTGATTGTGCAATAGAAACCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

327

Amino Acids

35.81

Weight (kDa)

5.2

Isoelectric Point (pI)

29.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	47 - 315	1.3e-24	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	422, 727
AccB1I	GGYRCC	1 cut(s)	711
AclWI	GGATC	4 cut(s)	366, 379, 709, 888
AcoI	YGGCCR	2 cut(s)	33, 230
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	5 cut(s)	95, 106, 533, 940, 950
AfiI	CCNNNNNNNGG	2 cut(s)	607, 953
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	5 cut(s)	46, 653, 761, 844, 852
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	5 cut(s)	15, 319, 567, 797, 803
AluI	AGCT	5 cut(s)	15, 319, 567, 797, 803
Alw26I	GTCTC	1 cut(s)	721
AlwI	GGATC	4 cut(s)	366, 379, 709, 888
AlwNI	CAGNNNCTG	2 cut(s)	425, 490
AoxI	GGCC	3 cut(s)	33, 230, 399
ApaI	GGGCCC	1 cut(s)	403
ApeKI	GCWGC	2 cut(s)	319, 753
ApoI	RAATTY	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	4 cut(s)	350, 399, 400, 944
AsuC2I	CCSGG	2 cut(s)	348, 397
AsuHPI	GGTGA	1 cut(s)	150
AvaII	GGWCC	2 cut(s)	350, 944
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	2 cut(s)	35, 232
BamHI	GGATCC	1 cut(s)	371
BanI	GGYRCC	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	403, 600
BbvI	GCAGC	2 cut(s)	306, 740
BccI	CCATC	4 cut(s)	264, 272, 362, 920
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	2 cut(s)	348, 397
BcoDI	GTCTC	1 cut(s)	721
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	2 cut(s)	108, 800
BfmI	CTRYAG	1 cut(s)	97
BfoI	RGCGCY	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	422, 727
BisI	GCNGC	2 cut(s)	320, 754
BlsI	GCNGC	2 cut(s)	321, 755
BmcAI	AGTACT	2 cut(s)	95, 106
Bme1390I	CCNGG	3 cut(s)	229, 348, 397
Bme18I	GGWCC	2 cut(s)	350, 944
BmgT120I	GGNCC	4 cut(s)	350, 399, 400, 944
BmiI	GGNNCC	5 cut(s)	373, 394, 400, 401, 713
BmrFI	CCNGG	3 cut(s)	229, 348, 397
BmrI	ACTGGG	1 cut(s)	500
BmsI	GCATC	4 cut(s)	315, 552, 859, 920
BmuI	ACTGGG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	348, 397
Bsa29I	ATCGAT	1 cut(s)	883
BsaAI	YACGTR	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	542
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	2 cut(s)	607, 953
Bse1I	ACTGG	2 cut(s)	268, 495
Bse3DI	GCAATG	1 cut(s)	729
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	229
BseCI	ATCGAT	1 cut(s)	883
BseDI	CCNNGG	1 cut(s)	396
BseGI	GGATG	3 cut(s)	256, 931, 935
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	2 cut(s)	607, 953
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	3 cut(s)	509, 761, 867
BseNI	ACTGG	2 cut(s)	268, 495
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	306, 740
BseYI	CCCAGC	1 cut(s)	600
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	35, 232, 401
BshNI	GGYRCC	1 cut(s)	711
BshVI	ATCGAT	1 cut(s)	883
BsiEI	CGRYCG	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	348, 396
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	2 cut(s)	607, 953
BsmAI	GTCTC	1 cut(s)	721
BsmFI	GGGAC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	35, 232, 401
Bsp120I	GGGCCC	1 cut(s)	399
Bsp1286I	GDGCHC	2 cut(s)	403, 600
Bsp143I	GATC	5 cut(s)	79, 88, 371, 701, 880
BspANI	GGCC	3 cut(s)	35, 232, 401
BspCNI	CTCAG	3 cut(s)	510, 762, 868
BspDI	ATCGAT	1 cut(s)	883
BspLI	GGNNCC	5 cut(s)	373, 394, 400, 401, 713
BspMI	ACCTGC	2 cut(s)	422, 727
BspPI	GGATC	4 cut(s)	366, 379, 709, 888
BspT107I	GGYRCC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	268, 495
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	5 cut(s)	79, 88, 371, 701, 880
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	7 cut(s)	71, 101, 205, 427, 646, 948, 979
BstBAI	YACGTR	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	6 cut(s)	11, 306, 518, 667, 770, 876
BstF5I	GGATG	3 cut(s)	256, 931, 935
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	5 cut(s)	82, 91, 374, 704, 883
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	5 cut(s)	79, 88, 371, 701, 880
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 325, 549
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	3 cut(s)	227, 346, 395
BstSFI	CTRYAG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	306, 740
BstX2I	RGATCY	2 cut(s)	371, 701
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	2 cut(s)	371, 701
Bsu15I	ATCGAT	1 cut(s)	883
BsuRI	GGCC	3 cut(s)	35, 232, 401
BsuTUI	ATCGAT	1 cut(s)	883
BtgZI	GCGATG	1 cut(s)	291
BtsCI	GGATG	3 cut(s)	256, 931, 935
BtsIMutI	CAGTG	1 cut(s)	642
BveI	ACCTGC	2 cut(s)	422, 727
Cac8I	GCNNGC	1 cut(s)	37
CaiI	CAGNNNCTG	2 cut(s)	425, 490
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	4 cut(s)	350, 399, 400, 944
ClaI	ATCGAT	1 cut(s)	883
Csp6I	GTAC	5 cut(s)	94, 105, 532, 939, 949
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	2 cut(s)	83, 356
CviQI	GTAC	5 cut(s)	94, 105, 532, 939, 949
DdeI	CTNAG	6 cut(s)	11, 306, 518, 667, 770, 876
DpnI	GATC	5 cut(s)	81, 90, 373, 703, 882
DpnII	GATC	5 cut(s)	79, 88, 371, 701, 880
EaeI	YGGCCR	2 cut(s)	33, 230
Eco24I	GRGCYC	2 cut(s)	403, 600
Eco47I	GGWCC	2 cut(s)	350, 944
Eco57I	CTGAAG	1 cut(s)	768
EcoO109I	RGGNCCY	2 cut(s)	399, 400
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	1 cut(s)	227
EcoT38I	GRGCYC	2 cut(s)	403, 600
FaeI	CATG	2 cut(s)	86, 359
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	82, 355
FauNDI	CATATG	2 cut(s)	235, 904
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	320, 754
FokI	GGATG	3 cut(s)	243, 938, 942
FriOI	GRGCYC	2 cut(s)	403, 600
Fsp4HI	GCNGC	2 cut(s)	320, 754
FspBI	CTAG	2 cut(s)	108, 800
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	2 cut(s)	320, 754
GsaI	CCCAGC	1 cut(s)	604
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	3 cut(s)	35, 232, 401
HapII	CCGG	2 cut(s)	348, 396
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	2 cut(s)	86, 359
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	155, 270, 840
HpaII	CCGG	2 cut(s)	348, 396
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	4 cut(s)	25, 353, 532, 912
Hpy188I	TCNGA	4 cut(s)	519, 693, 771, 925
Hpy188III	TCNNGA	3 cut(s)	77, 625, 837
Hpy8I	GTNNAC	4 cut(s)	25, 353, 532, 912
HpyAV	CCTTC	5 cut(s)	67, 71, 669, 743, 755
HpyCH4III	ACNGT	7 cut(s)	71, 101, 205, 427, 646, 948, 979
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	8 cut(s)	314, 343, 407, 445, 686, 722, 899, 968
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 325, 549
HpyF3I	CTNAG	6 cut(s)	11, 306, 518, 667, 770, 876
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	86, 359
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 88, 371, 701, 880
LmnI	GCTCC	1 cut(s)	392
Lsp1109I	GCAGC	2 cut(s)	306, 740
LweI	GCATC	4 cut(s)	315, 552, 859, 920
MaeI	CTAG	2 cut(s)	108, 800
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	4 cut(s)	199, 466, 632, 742
MalI	GATC	5 cut(s)	81, 90, 373, 703, 882
MboI	GATC	5 cut(s)	79, 88, 371, 701, 880
MboII	GAAGA	3 cut(s)	221, 241, 279
MflI	RGATCY	2 cut(s)	371, 701
MhlI	GDGCHC	2 cut(s)	403, 600
MlsI	TGGCCA	2 cut(s)	35, 232
MluCI	AATT	4 cut(s)	51, 189, 513, 681
MluNI	TGGCCA	2 cut(s)	35, 232
MmeI	TCCRAC	2 cut(s)	399, 903
MnlI	CCTC	5 cut(s)	160, 601, 665, 821, 871
Mox20I	TGGCCA	2 cut(s)	35, 232
MroXI	GAANNNNTTC	1 cut(s)	765
MscI	TGGCCA	2 cut(s)	35, 232
MseI	TTAA	2 cut(s)	858, 891
Msp20I	TGGCCA	2 cut(s)	35, 232
MspI	CCGG	2 cut(s)	348, 396
MspR9I	CCNGG	3 cut(s)	229, 348, 397
MvaI	CCWGG	1 cut(s)	229
MwoI	GCNNNNNNNGC	3 cut(s)	311, 325, 549
NciI	CCSGG	2 cut(s)	348, 397
NdeI	CATATG	2 cut(s)	235, 904
NdeII	GATC	5 cut(s)	79, 88, 371, 701, 880
NlaIII	CATG	2 cut(s)	86, 359
NlaIV	GGNNCC	5 cut(s)	373, 394, 400, 401, 713
NmuCI	GTSAC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	155, 270, 840
PkrI	GCNGC	2 cut(s)	321, 755
Ppu21I	YACGTR	1 cut(s)	28
Psp6I	CCWGG	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	5 cut(s)	373, 394, 400, 401, 713
PspOMI	GGGCCC	1 cut(s)	399
PspPI	GGNCC	4 cut(s)	350, 399, 400, 944
PstNI	CAGNNNCTG	2 cut(s)	425, 490
PsuI	RGATCY	2 cut(s)	371, 701
RsaI	GTAC	5 cut(s)	95, 106, 533, 940, 950
RsaNI	GTAC	5 cut(s)	94, 105, 532, 939, 949
SaqAI	TTAA	2 cut(s)	858, 891
SatI	GCNGC	2 cut(s)	320, 754
Sau3AI	GATC	5 cut(s)	79, 88, 371, 701, 880
Sau96I	GGNCC	4 cut(s)	350, 399, 400, 944
ScaI	AGTACT	2 cut(s)	95, 106
ScrFI	CCNGG	3 cut(s)	229, 348, 397
SduI	GDGCHC	2 cut(s)	403, 600
SfaNI	GCATC	4 cut(s)	315, 552, 859, 920
SfcI	CTRYAG	1 cut(s)	97
SinI	GGWCC	2 cut(s)	350, 944
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	4 cut(s)	51, 189, 513, 681
SspI	AATATT	2 cut(s)	848, 855
SspMI	CTAG	2 cut(s)	108, 800
StyD4I	CCNGG	3 cut(s)	227, 346, 395
TaaI	ACNGT	7 cut(s)	71, 101, 205, 427, 646, 948, 979
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	1 cut(s)	883
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	4 cut(s)	51, 189, 513, 681
TatI	WGTACW	3 cut(s)	93, 104, 531
TfiI	GAWTC	3 cut(s)	155, 270, 840
Tru1I	TTAA	2 cut(s)	858, 891
Tru9I	TTAA	2 cut(s)	858, 891
TscAI	CASTG	1 cut(s)	649
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	319, 753
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	649
VpaK11BI	GGWCC	2 cut(s)	350, 944
XapI	RAATTY	1 cut(s)	513
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	2 cut(s)	108, 800
ZrmI	AGTACT	2 cut(s)	95, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.