Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

22915210 .. 22918354

Gene Structure 3145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAAGCTACTGCAACGGCGATCAAGGTGGAGGCGGCGGCTCGGAGAGTCACATACATAGACGCTTCAACAGCTGAGTTTGCAAAGCTGCCGATGCTTCCACCATACTTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTCGCTTCGGGTGGAGCCGGGGCCCTTGCAACAACCAACGCAGGAACTGTGGCAAGTTTTCCAATGCAGTTGAGTTATTTTAGGAATGTGACAAAGTTGTTACAACAGAAACTGGGTCATTTAGAAGCCAAACGTATTCTGAGAAACGCTGTGTACTTGATTAGCATCGGAGGCTGTGATTATTTCAGCTTCTATGCTACATACCCAAATGCGACCGAGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAACATTCGGTGTTACTGAAGGGTGCGTTGAAGGACTTCTGAGTTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTGAGGATCGATTCCTTAACCCTGCAACATATGGGTTCACAAATGGGTCGGATGGATGCTGTGGTACAGGACCGTACAGGGGAGTTGATTGTGCAATAGAACCGTTTGAATTATGCGAAGACCCTGGTGAGCATGTGTGGTTTGATGGTGGCCATTCGACTGAAGGGGCAAACTTCCAATATGCAAAGCTAATATGGAGTGGAACCCCGAATACCACAGGGCCTTACAATGTCCAACAGCTTTTTCAGCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

299

Amino Acids

32.41

Weight (kDa)

5.03

Isoelectric Point (pI)

31.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	26 - 276	2.1e-16	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	496
AccB1I	GGYRCC	1 cut(s)	480
AciI	CCGC	2 cut(s)	35, 38
AclWI	GGATC	4 cut(s)	135, 148, 478, 657
AcoI	YGGCCR	1 cut(s)	793
AcuI	CTGAAG	2 cut(s)	537, 825
AfaI	GTAC	3 cut(s)	302, 709, 719
AfiI	CCNNNNNNNGG	2 cut(s)	376, 722
AgsI	TTSAA	6 cut(s)	69, 422, 530, 613, 621, 752
AjnI	CCWGG	1 cut(s)	766
AjuI	GAANNNNNNNTTGG	1 cut(s)	870
AluBI	AGCT	8 cut(s)	8, 74, 88, 336, 566, 572, 832, 883
AluI	AGCT	8 cut(s)	8, 74, 88, 336, 566, 572, 832, 883
Alw26I	GTCTC	1 cut(s)	490
AlwI	GGATC	4 cut(s)	135, 148, 478, 657
AlwNI	CAGNNNCTG	2 cut(s)	194, 259
AoxI	GGCC	3 cut(s)	168, 793, 863
ApaI	GGGCCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	88
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	5 cut(s)	119, 168, 169, 713, 863
AsuC2I	CCSGG	2 cut(s)	117, 166
AsuHPI	GGTGA	1 cut(s)	782
AvaII	GGWCC	2 cut(s)	119, 713
BaeGI	GKGCMC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	172, 369
BbsI	GAAGAC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	75
BccI	CCATC	3 cut(s)	131, 689, 782
BceAI	ACGGC	1 cut(s)	33
BciT130I	CCWGG	1 cut(s)	768
BcnI	CCSGG	2 cut(s)	117, 166
BcoDI	GTCTC	1 cut(s)	490
BfaI	CTAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	496
BisI	GCNGC	3 cut(s)	36, 39, 89
BlsI	GCNGC	3 cut(s)	37, 40, 90
Bme1390I	CCNGG	3 cut(s)	117, 166, 768
Bme18I	GGWCC	2 cut(s)	119, 713
BmgT120I	GGNCC	5 cut(s)	119, 168, 169, 713, 863
BmiI	GGNNCC	6 cut(s)	142, 163, 169, 170, 482, 847
BmrFI	CCNGG	3 cut(s)	117, 166, 768
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	4 cut(s)	84, 321, 628, 689
BmuI	ACTGGG	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	768
BpuMI	CCSGG	2 cut(s)	117, 166
Bsa29I	ATCGAT	1 cut(s)	652
BsaBI	GATNNNNATC	1 cut(s)	311
BsaJI	CCNNGG	2 cut(s)	165, 766
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 722
Bse1I	ACTGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	498
Bse8I	GATNNNNATC	1 cut(s)	311
BseBI	CCWGG	1 cut(s)	768
BseCI	ATCGAT	1 cut(s)	652
BseDI	CCNNGG	2 cut(s)	165, 766
BseGI	GGATG	2 cut(s)	700, 704
BseJI	GATNNNNATC	1 cut(s)	311
BseLI	CCNNNNNNNGG	2 cut(s)	376, 722
BseMI	GCAATG	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	66, 278, 530, 636
BseNI	ACTGG	1 cut(s)	264
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	75
BseYI	CCCAGC	1 cut(s)	369
Bsh1285I	CGRYCG	1 cut(s)	363
BshFI	GGCC	3 cut(s)	170, 795, 865
BshNI	GGYRCC	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	652
BsiEI	CGRYCG	1 cut(s)	363
BsiSI	CCGG	2 cut(s)	117, 165
BslI	CCNNNNNNNGG	2 cut(s)	376, 722
BsmAI	GTCTC	1 cut(s)	490
BsnI	GGCC	3 cut(s)	170, 795, 865
Bsp120I	GGGCCC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	172, 369
Bsp143I	GATC	4 cut(s)	21, 140, 470, 649
BspACI	CCGC	2 cut(s)	35, 38
BspANI	GGCC	3 cut(s)	170, 795, 865
BspCNI	CTCAG	4 cut(s)	67, 279, 531, 637
BspDI	ATCGAT	1 cut(s)	652
BspLI	GGNNCC	6 cut(s)	142, 163, 169, 170, 482, 847
BspMI	ACCTGC	1 cut(s)	496
BspPI	GGATC	4 cut(s)	135, 148, 478, 657
BspT107I	GGYRCC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	498
BsrI	ACTGG	1 cut(s)	264
BssECI	CCNNGG	2 cut(s)	165, 766
BssMI	GATC	4 cut(s)	21, 140, 470, 649
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	4 cut(s)	196, 415, 717, 747
BstDEI	CTNAG	5 cut(s)	75, 287, 436, 539, 645
BstF5I	GGATG	2 cut(s)	700, 704
BstKTI	GATC	4 cut(s)	24, 143, 473, 652
BstMAI	GTCTC	1 cut(s)	490
BstMBI	GATC	4 cut(s)	21, 140, 470, 649
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 80, 94, 318, 889
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	779
BstSCI	CCNGG	3 cut(s)	115, 164, 766
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	768
BstX2I	RGATCY	2 cut(s)	140, 470
BstYI	RGATCY	2 cut(s)	140, 470
Bsu15I	ATCGAT	1 cut(s)	652
BsuRI	GGCC	3 cut(s)	170, 795, 865
BsuTUI	ATCGAT	1 cut(s)	652
BtsCI	GGATG	2 cut(s)	700, 704
BtsIMutI	CAGTG	1 cut(s)	411
BveI	ACCTGC	1 cut(s)	496
CaiI	CAGNNNCTG	2 cut(s)	194, 259
Cfr13I	GGNCC	5 cut(s)	119, 168, 169, 713, 863
ClaI	ATCGAT	1 cut(s)	652
CseI	GACGC	1 cut(s)	71
Csp6I	GTAC	3 cut(s)	301, 708, 718
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	2 cut(s)	125, 776
CviQI	GTAC	3 cut(s)	301, 708, 718
DdeI	CTNAG	5 cut(s)	75, 287, 436, 539, 645
DpnI	GATC	4 cut(s)	23, 142, 472, 651
DpnII	GATC	4 cut(s)	21, 140, 470, 649
EaeI	YGGCCR	1 cut(s)	793
Eco24I	GRGCYC	2 cut(s)	172, 369
Eco47I	GGWCC	2 cut(s)	119, 713
Eco57I	CTGAAG	2 cut(s)	537, 825
EcoO109I	RGGNCCY	3 cut(s)	168, 169, 863
EcoRII	CCWGG	1 cut(s)	766
EcoT38I	GRGCYC	2 cut(s)	172, 369
FaeI	CATG	2 cut(s)	128, 779
FatI	CATG	2 cut(s)	124, 775
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	3 cut(s)	36, 39, 89
FokI	GGATG	2 cut(s)	707, 711
FriOI	GRGCYC	2 cut(s)	172, 369
Fsp4HI	GCNGC	3 cut(s)	36, 39, 89
FspBI	CTAG	1 cut(s)	569
GluI	GCNGC	3 cut(s)	36, 39, 89
GsaI	CCCAGC	1 cut(s)	373
HaeIII	GGCC	3 cut(s)	170, 795, 865
HapII	CCGG	2 cut(s)	117, 165
HgaI	GACGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	128, 779
HinfI	GANTC	3 cut(s)	48, 609, 654
HpaII	CCGG	2 cut(s)	117, 165
HphI	GGTGA	1 cut(s)	782
Hpy166II	GTNNAC	3 cut(s)	122, 301, 681
Hpy188I	TCNGA	6 cut(s)	45, 288, 317, 462, 540, 694
Hpy188III	TCNNGA	2 cut(s)	394, 606
Hpy8I	GTNNAC	3 cut(s)	122, 301, 681
HpyAV	CCTTC	4 cut(s)	438, 512, 524, 800
HpyCH4III	ACNGT	4 cut(s)	196, 415, 717, 747
HpyCH4IV	ACGT	1 cut(s)	280
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 80, 94, 318, 889
HpyF3I	CTNAG	5 cut(s)	75, 287, 436, 539, 645
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	2 cut(s)	128, 779
Kzo9I	GATC	4 cut(s)	21, 140, 470, 649
LmnI	GCTCC	1 cut(s)	161
Lsp1109I	GCAGC	1 cut(s)	75
LweI	GCATC	4 cut(s)	84, 321, 628, 689
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	5 cut(s)	49, 235, 246, 401, 511
MalI	GATC	4 cut(s)	23, 142, 472, 651
MboI	GATC	4 cut(s)	21, 140, 470, 649
MboII	GAAGA	1 cut(s)	773
MflI	RGATCY	2 cut(s)	140, 470
MhlI	GDGCHC	2 cut(s)	172, 369
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	2 cut(s)	450, 752
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	2 cut(s)	168, 672
MnlI	CCTC	6 cut(s)	25, 311, 370, 434, 590, 640
Mox20I	TGGCCA	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	2 cut(s)	627, 660
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	117, 165
MspR9I	CCNGG	3 cut(s)	117, 166, 768
MvaI	CCWGG	1 cut(s)	768
MwoI	GCNNNNNNNGC	5 cut(s)	71, 80, 94, 318, 889
NciI	CCSGG	2 cut(s)	117, 166
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	4 cut(s)	21, 140, 470, 649
NlaIII	CATG	2 cut(s)	128, 779
NlaIV	GGNNCC	6 cut(s)	142, 163, 169, 170, 482, 847
NmuCI	GTSAC	2 cut(s)	49, 235
NspI	RCATGY	1 cut(s)	779
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	609, 654
PkrI	GCNGC	3 cut(s)	37, 40, 90
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	369
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	6 cut(s)	142, 163, 169, 170, 482, 847
PspOMI	GGGCCC	1 cut(s)	168
PspPI	GGNCC	5 cut(s)	119, 168, 169, 713, 863
PsrI	GAACNNNNNNTAC	2 cut(s)	838, 870
PstNI	CAGNNNCTG	2 cut(s)	194, 259
PsuI	RGATCY	2 cut(s)	140, 470
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	3 cut(s)	302, 709, 719
RsaNI	GTAC	3 cut(s)	301, 708, 718
SaqAI	TTAA	2 cut(s)	627, 660
SatI	GCNGC	3 cut(s)	36, 39, 89
Sau3AI	GATC	4 cut(s)	21, 140, 470, 649
Sau96I	GGNCC	5 cut(s)	119, 168, 169, 713, 863
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	3 cut(s)	117, 166, 768
SduI	GDGCHC	2 cut(s)	172, 369
SfaNI	GCATC	4 cut(s)	84, 321, 628, 689
SinI	GGWCC	2 cut(s)	119, 713
Sse9I	AATT	2 cut(s)	450, 752
SsiI	CCGC	2 cut(s)	35, 38
SspI	AATATT	2 cut(s)	617, 624
SspMI	CTAG	1 cut(s)	569
StyD4I	CCNGG	3 cut(s)	115, 164, 766
TaaI	ACNGT	4 cut(s)	196, 415, 717, 747
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	652, 800
TaqII	GACCGA	1 cut(s)	377
TasI	AATT	2 cut(s)	450, 752
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	2 cut(s)	609, 654
Tru1I	TTAA	2 cut(s)	627, 660
Tru9I	TTAA	2 cut(s)	627, 660
TscAI	CASTG	1 cut(s)	418
TseFI	GTSAC	2 cut(s)	49, 235
TseI	GCWGC	1 cut(s)	88
Tsp45I	GTSAC	2 cut(s)	49, 235
TspRI	CASTG	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	119, 713
XceI	RCATGY	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.