Rh5AG320200

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
47418018 .. 47420708
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG320200.1

Sequence Viewer

Length: 888 bp
ATGTGTTTTTGTAAGAATTCTCTTCAATTGTGCATGGCAGCTAAGTACGCGAAGCTGCCCATGCTTCCACCTTACCTGCAACCAGGTCCACATGATTTTACCGATGGATGCAACTTTGCTTCGTCTGGAGCCGGGGTTCTTGTTGAAACTAATCCAGGAAAATCGATAAGTCTTCCAGCACAGTTGGGCTTCTTCAGAGATGTCAGAAAGTCGCTACAACAGAAACTGGGTGGTCTAAAAACCAAACGCGTGCTCAGGGAAGCTGTTTACTTGATTGGCATCGGAGGGGATGATTATTTTCACTTCTACAGCGACTTTCCAAATGCCACCGAGTCCCTTCAACTCGAAGCCGTAGCAGTTGTGATTGGCAACTTGAGCATCATACTCCAAGAAATATATGATTTAGGAGGAAGGAAGTTTGCATTTCAAAATGCAGGACCGCTTGGATGCATACCTTATAGGAGACAAATTTACAATACTAAGGAAGGATGCGTTGAAGGACTCAATAGTCTGGCTAGTCTACATAACACAGCTCTAGTTTCTGTCCTTAGAGAGTTCGAGAGCCAACTATTAGGATTCAAATATTCAATATTTGATTACTATAATTCACTTGATGATCGACTCCGTAACCCTGCCAAATATGGGTTCACAAATGCGACAGATGCATGTTGTGGTACAGGGCTGTTCAGAGCAGCTTATTGTGGTGGAGATAATGGAACAAAACCATATGAACTATGCAATGACGTTGGAGATTATTTGTGGTTTGATGGTAGCCATACGACTGAAATTGCAAACTTTCCAATGGCAGAGCTGATATGGAGTGGAACACCCAATGTCACAGGGCCTTACAATGTCAAACAACTTTTCCAACAAGTTTCAGCTTATTAA

Protein Analysis

295

Amino Acids

32.55

Weight (kDa)

6.1

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 21 - 271 3e-19 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 84
AccI GTMKAC 1 cut(s) 520
AccII CGCG 2 cut(s) 50, 249
AciI CCGC 1 cut(s) 440
AcsI RAATTY 2 cut(s) 16, 468
AcuI CTGAAG 1 cut(s) 178
AfaI GTAC 2 cut(s) 47, 676
AfiI CCNNNNNNNGG 1 cut(s) 642
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 7 cut(s) 26, 146, 341, 428, 497, 580, 588
AjnI CCWGG 2 cut(s) 82, 154
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AloI GAACNNNNNNTCC 2 cut(s) 120, 152
AluBI AGCT 7 cut(s) 41, 55, 263, 533, 695, 811, 881
AluI AGCT 7 cut(s) 41, 55, 263, 533, 695, 811, 881
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 1 cut(s) 457
AlwNI CAGNNNCTG 1 cut(s) 226
AoxI GGCC 1 cut(s) 842
ApeKI GCWGC 3 cut(s) 38, 55, 692
ApoI RAATTY 2 cut(s) 16, 468
AspS9I GGNCC 3 cut(s) 86, 437, 842
AsuC2I CCSGG 1 cut(s) 133
AvaII GGWCC 2 cut(s) 86, 437
BbsI GAAGAC 1 cut(s) 164
Bbv12I GWGCWC 1 cut(s) 255
BbvI GCAGC 3 cut(s) 42, 50, 704
BccI CCATC 2 cut(s) 98, 761
BceAI ACGGC 1 cut(s) 335
BciT130I CCWGG 2 cut(s) 84, 156
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 2 cut(s) 516, 536
BfmI CTRYAG 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 84
BisI GCNGC 3 cut(s) 39, 56, 693
BlsI GCNGC 3 cut(s) 40, 57, 694
Bme1390I CCNGG 3 cut(s) 84, 133, 156
Bme18I GGWCC 2 cut(s) 86, 437
BmgT120I GGNCC 3 cut(s) 86, 437, 842
BmiI GGNNCC 1 cut(s) 130
BmrFI CCNGG 3 cut(s) 84, 133, 156
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 6 cut(s) 98, 288, 387, 437, 479, 652
BmuI ACTGGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 147
Bpu10I CCTNAGC 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 394
BpuMI CCSGG 1 cut(s) 133
Bsa29I ATCGAT 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 132
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 642
Bse1I ACTGG 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 84, 156
BseCI ATCGAT 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 4 cut(s) 113, 295, 452, 494
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 642
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 3 cut(s) 42, 50, 704
Bsh1236I CGCG 2 cut(s) 50, 249
BshFI GGCC 1 cut(s) 844
BshVI ATCGAT 1 cut(s) 164
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 642
BsmAI GTCTC 1 cut(s) 457
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 844
Bsp1286I GDGCHC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 616
BspACI CCGC 1 cut(s) 440
BspANI GGCC 1 cut(s) 844
BspCNI CTCAG 1 cut(s) 267
BspDI ATCGAT 1 cut(s) 164
BspFNI CGCG 2 cut(s) 50, 249
BspLI GGNNCC 1 cut(s) 130
BspMI ACCTGC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 745
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 84, 156
Bst4CI ACNGT 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 251
BstDEI CTNAG 4 cut(s) 42, 254, 480, 548
BstF5I GGATG 4 cut(s) 113, 295, 452, 494
BstFNI CGCG 2 cut(s) 50, 249
BstKTI GATC 1 cut(s) 619
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 1 cut(s) 616
BstMWI GCNNNNNNNGC 4 cut(s) 47, 61, 375, 662
BstNI CCWGG 2 cut(s) 84, 156
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 3 cut(s) 82, 131, 154
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 2 cut(s) 50, 249
BstV1I GCAGC 3 cut(s) 42, 50, 704
BstV2I GAAGAC 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 164
BsuRI GGCC 1 cut(s) 844
BsuTUI ATCGAT 1 cut(s) 164
BtsCI GGATG 4 cut(s) 113, 295, 452, 494
BveI ACCTGC 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 251
CaiI CAGNNNCTG 1 cut(s) 226
Cfr13I GGNCC 3 cut(s) 86, 437, 842
ClaI ATCGAT 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 82
Csp6I GTAC 2 cut(s) 46, 675
CviAII CATG 4 cut(s) 34, 61, 92, 666
CviQI GTAC 2 cut(s) 46, 675
DdeI CTNAG 4 cut(s) 42, 254, 480, 548
DpnI GATC 1 cut(s) 618
DpnII GATC 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 507
DseDI GACNNNNNNGTC 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 86, 437
Eco57I CTGAAG 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 842
EcoRI GAATTC 1 cut(s) 16
EcoRII CCWGG 2 cut(s) 82, 154
EcoT22I ATGCAT 2 cut(s) 452, 667
FaeI CATG 4 cut(s) 37, 64, 95, 669
FaqI GGGAC 1 cut(s) 319
FatI CATG 4 cut(s) 33, 60, 91, 665
FauNDI CATATG 1 cut(s) 727
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 3 cut(s) 39, 56, 693
FokI GGATG 4 cut(s) 120, 302, 459, 501
Fsp4HI GCNGC 3 cut(s) 39, 56, 693
FspBI CTAG 2 cut(s) 516, 536
GluI GCNGC 3 cut(s) 39, 56, 693
GsuI CTGGAG 1 cut(s) 147
HaeIII GGCC 1 cut(s) 844
HapII CCGG 1 cut(s) 132
Hin1II CATG 4 cut(s) 37, 64, 95, 669
HinfI GANTC 4 cut(s) 332, 501, 576, 621
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 4 cut(s) 89, 268, 521, 648
Hpy188I TCNGA 4 cut(s) 197, 206, 284, 689
Hpy188III TCNNGA 2 cut(s) 126, 559
Hpy8I GTNNAC 4 cut(s) 89, 268, 521, 648
HpyAV CCTTC 4 cut(s) 347, 405, 479, 491
HpyCH4III ACNGT 1 cut(s) 183
HpyCH4IV ACGT 1 cut(s) 744
HpyCH4V TGCA 9 cut(s) 33, 79, 111, 422, 434, 450, 665, 738, 791
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 61, 375, 662
HpyF3I CTNAG 4 cut(s) 42, 254, 480, 548
HpySE526I ACGT 1 cut(s) 744
Hsp92II CATG 4 cut(s) 37, 64, 95, 669
Kzo9I GATC 1 cut(s) 616
LmnI GCTCC 1 cut(s) 128
Lsp1109I GCAGC 3 cut(s) 42, 50, 704
LweI GCATC 6 cut(s) 98, 288, 387, 437, 479, 652
MabI ACCWGGT 1 cut(s) 82
MaeI CTAG 2 cut(s) 516, 536
MaeII ACGT 1 cut(s) 744
MaeIII GTNAC 2 cut(s) 626, 835
MalI GATC 1 cut(s) 618
MboI GATC 1 cut(s) 616
MboII GAAGA 3 cut(s) 14, 164, 184
MfeI CAATTG 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 5 cut(s) 16, 26, 468, 604, 786
MluI ACGCGT 1 cut(s) 247
MlyI GAGTC 3 cut(s) 341, 495, 615
MmeI TCCRAC 1 cut(s) 727
MnlI CCTC 2 cut(s) 278, 401
Mph1103I ATGCAT 2 cut(s) 452, 667
MseI TTAA 1 cut(s) 886
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 3 cut(s) 84, 133, 156
MunI CAATTG 1 cut(s) 26
MvaI CCWGG 2 cut(s) 84, 156
MvnI CGCG 2 cut(s) 50, 249
MwoI GCNNNNNNNGC 4 cut(s) 47, 61, 375, 662
NciI CCSGG 1 cut(s) 133
NdeI CATATG 1 cut(s) 727
NdeII GATC 1 cut(s) 616
NlaIII CATG 4 cut(s) 37, 64, 95, 669
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 835
NsiI ATGCAT 2 cut(s) 452, 667
NspI RCATGY 1 cut(s) 669
PfeI GAWTC 1 cut(s) 576
PfoI TCCNGGA 1 cut(s) 154
PkrI GCNGC 3 cut(s) 40, 57, 694
PleI GAGTC 3 cut(s) 340, 495, 615
PpsI GAGTC 3 cut(s) 340, 495, 615
Psp6I CCWGG 2 cut(s) 82, 154
PspGI CCWGG 2 cut(s) 82, 154
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 3 cut(s) 86, 437, 842
PstNI CAGNNNCTG 1 cut(s) 226
RsaI GTAC 2 cut(s) 47, 676
RsaNI GTAC 2 cut(s) 46, 675
SaqAI TTAA 1 cut(s) 886
SatI GCNGC 3 cut(s) 39, 56, 693
Sau3AI GATC 1 cut(s) 616
Sau96I GGNCC 3 cut(s) 86, 437, 842
SchI GAGTC 3 cut(s) 341, 495, 615
ScrFI CCNGG 3 cut(s) 84, 133, 156
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 82
SfaNI GCATC 6 cut(s) 98, 288, 387, 437, 479, 652
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 2 cut(s) 86, 437
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 5 cut(s) 16, 26, 468, 604, 786
SsiI CCGC 1 cut(s) 440
SspI AATATT 2 cut(s) 584, 591
SspMI CTAG 2 cut(s) 516, 536
StyD4I CCNGG 3 cut(s) 82, 131, 154
TaaI ACNGT 1 cut(s) 183
TaiI ACGT 1 cut(s) 747
TaqI TCGA 4 cut(s) 164, 345, 558, 619
TasI AATT 5 cut(s) 16, 26, 468, 604, 786
TfiI GAWTC 1 cut(s) 576
Tru1I TTAA 1 cut(s) 886
Tru9I TTAA 1 cut(s) 886
TseFI GTSAC 1 cut(s) 835
TseI GCWGC 3 cut(s) 38, 55, 692
Tsp45I GTSAC 1 cut(s) 835
TspDTI ATGAA 1 cut(s) 744
TspGWI ACGGA 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 86, 437
XapI RAATTY 2 cut(s) 16, 468
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 520
XspI CTAG 2 cut(s) 516, 536
Zsp2I ATGCAT 2 cut(s) 452, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.