Rorug02G0390100

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
49869555 .. 49870031
477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0390100.1

Sequence Viewer

Length: 279 bp
ATGTCTTTTCTAATATATATGTCCGAGCTGGAGAATTGCTTGAAGATAGTGAATGATGATATTCTTCCTGAGGTCAATGAATGCTTGAAGAAAGTGAATGATGATATTCTTCCTAAGGTCGATAAAATTCTCCCCAAGGTTATCGAGTGTCTTGACAAGGCTTCAAGTATCTTATCTATGATGAAGACTGGAGCAGTCCTGGGTGGGGGAGTTGCCGTCTTTGGGCTGTTTCTGAGATCTGGAAGAGGTGCGGTAGGTAGTTTCAGGGCTGAGGTCTGA

Protein Analysis

92

Amino Acids

9.97

Weight (kDa)

5.33

Isoelectric Point (pI)

59.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 205, 222
AgsI TTSAA 3 cut(s) 43, 88, 165
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
ApoI RAATTY 1 cut(s) 126
AxyI CCTNAGG 2 cut(s) 69, 114
BbsI GAAGAC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 270
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 200
BglII AGATCT 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 191
BpmI CTGGAG 2 cut(s) 50, 210
Bpu10I CCTNAGC 1 cut(s) 270
BsaJI CCNNGG 2 cut(s) 135, 199
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 222
Bse1I ACTGG 1 cut(s) 193
Bse21I CCTNAGG 2 cut(s) 69, 114
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 2 cut(s) 135, 199
BseLI CCNNNNNNNGG 2 cut(s) 205, 222
BseMII CTCAG 3 cut(s) 60, 224, 261
BseNI ACTGG 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 205, 222
BsmI GAATGC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 251
BspCNI CTCAG 3 cut(s) 61, 225, 262
BsrI ACTGG 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 135, 199
BssMI GATC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 238
BstDEI CTNAG 4 cut(s) 69, 114, 233, 270
BstKTI GATC 1 cut(s) 239
BstMBI GATC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
Bsu36I CCTNAGG 2 cut(s) 69, 114
CviJI RGCY 4 cut(s) 28, 161, 226, 269
CviKI_1 RGCY 4 cut(s) 28, 161, 226, 269
DdeI CTNAG 4 cut(s) 69, 114, 233, 270
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco130I CCWWGG 1 cut(s) 135
Eco81I CCTNAGG 2 cut(s) 69, 114
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaiI YATR 4 cut(s) 16, 18, 20, 179
GsuI CTGGAG 2 cut(s) 50, 210
Hpy188I TCNGA 3 cut(s) 25, 234, 278
Hpy188III TCNNGA 3 cut(s) 68, 152, 240
HpyF3I CTNAG 4 cut(s) 69, 114, 233, 270
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 14, 81, 174, 185, 212, 225, 250
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MboII GAAGA 6 cut(s) 55, 56, 100, 101, 196, 255
MflI RGATCY 1 cut(s) 236
MluCI AATT 2 cut(s) 34, 126
MnlI CCTC 3 cut(s) 64, 239, 265
MspR9I CCNGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 86
MvaI CCWGG 1 cut(s) 200
NdeII GATC 1 cut(s) 236
PctI GAATGC 1 cut(s) 86
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PsuI RGATCY 1 cut(s) 236
Sau3AI GATC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 200
SetI ASST 7 cut(s) 30, 75, 120, 141, 250, 259, 276
Sse9I AATT 2 cut(s) 34, 126
SsiI CCGC 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 135
TaqI TCGA 2 cut(s) 120, 144
TasI AATT 2 cut(s) 34, 126
TspDTI ATGAA 2 cut(s) 93, 197
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.