FvH4_6g35490

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27983459 .. 27986003
2545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35490.t1

Sequence Viewer

Length: 1089 bp
ATGGCTAGTTTTGGATACCTCTACTCTCTGTTACTAACCCTGATCAACTTCGACCCAGTAAGCTTCTCTTCTCACCGATCCACACCAGAAGCAACCCACAAGGCCCTGTTTGTGTTTGGTGACTCACTCTTCGATGCCGGAAACAACCAATACCTGAATACCAGTGTGGAAGGGTCTGCAGTTATCTGGCCATATGGGGAAACTTACTTCGACCATCCCACTGGTCGAATCTCCGACGGCCGCATTGTCCCTGATTTTATTGCTCAGTTTGCTAATCTTCCTTTGCCGCCACCATACTTGGAACCTGGTGCTCATCAATTTAGCGATGGAACCAACTTTGCTTCTGCCGGAGCTGGTGTTCTGCCTGAAACTCAACCCGGAACGATAAGTCTTCCAAATCAGTTGAGCAATTTTAAGGATATGAAGAGGTCACTGCATCAGAAATTGGGTGAAAAAGTGTCCAAGAAGTTGTTAGGGAGAGCTGTTTATTTCTTCAGCATTGGAGGAAATGACTACATTAACCTCTTTACCCAACAGCCAAAAGCTCCTAAGAGCTACAAGAGGCAATATGTAGGAATGGTGATCAGAAACTTGACCAGTGTACTCAAAGAAGTGTATGAGTTAGGAGGAAGGAAAATAGCATTTCAGAATGTGGCACCTTTGGGCTGCATACCTGCAGTGAAATCAGGAAATCCTGAAGTTGGTAGTGAATGCCTTGAAGAACCATTAAAATTGGCCAGGCTACATAACAGAGCTCTCTCTGCTGCCCTCAAGAAGTTGGAGAGCCATTTACCAGGATTCAAGTACTCCATATTTGATTACTATAATGCACTTGGGGACAGAGTTAACAATCCTTCAAAATATGGATTCAAGAATGGGACATCTGCTTGTTGTGGCAGTGGGGCATTTAGAGGGTCTCATTGTGGCACAGAACCATACGAGCTATGCAGCAACCCCAGTGAGTATGTGTGGTTTGATGGTGGTCATACAACTGAAAGTGCCAATCTCCAACTAGCTGAGCTTATATGGACTGGACCTTCAGATGTCACAGGGCCTTACACTATGAAACAGCTATTTGAACAATCTTGA

Protein Analysis

363

Amino Acids

39.74

Weight (kDa)

7.1

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 36 - 342 2.9e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 655
AciI CCGC 2 cut(s) 241, 287
AclWI GGATC 1 cut(s) 72
AcoI YGGCCR 3 cut(s) 188, 238, 735
AcuI CTGAAG 3 cut(s) 478, 717, 1023
AfaI GTAC 2 cut(s) 603, 806
AfiI CCNNNNNNNGG 1 cut(s) 701
AgsI TTSAA 5 cut(s) 719, 802, 858, 871, 1079
AjnI CCWGG 3 cut(s) 304, 737, 793
AloI GAACNNNNNNTCC 2 cut(s) 342, 374
Alw21I GWGCWC 2 cut(s) 313, 757
Alw26I GTCTC 1 cut(s) 921
AlwI GGATC 1 cut(s) 72
AoxI GGCC 5 cut(s) 102, 188, 238, 735, 1052
ApeKI GCWGC 3 cut(s) 666, 764, 948
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspS9I GGNCC 3 cut(s) 103, 1034, 1052
AsuC2I CCSGG 1 cut(s) 378
AsuHPI GGTGA 4 cut(s) 65, 131, 461, 592
AvaII GGWCC 1 cut(s) 1034
BalI TGGCCA 2 cut(s) 190, 737
BanI GGYRCC 1 cut(s) 655
BanII GRGCYC 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 2 cut(s) 313, 757
BbvI GCAGC 3 cut(s) 653, 751, 960
BccI CCATC 3 cut(s) 222, 320, 971
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 3 cut(s) 306, 739, 795
BciVI GTATCC 1 cut(s) 8
BclI TGATCA 2 cut(s) 42, 582
BcnI CCSGG 1 cut(s) 378
BcoDI GTCTC 1 cut(s) 921
BfaI CTAG 2 cut(s) 6, 1013
BfmI CTRYAG 2 cut(s) 177, 675
BfuAI ACCTGC 1 cut(s) 682
BfuI GTATCC 1 cut(s) 8
BisI GCNGC 5 cut(s) 241, 287, 667, 765, 949
BlpI GCTNAGC 1 cut(s) 1017
BlsI GCNGC 5 cut(s) 242, 288, 668, 766, 950
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 306, 378, 739, 795
Bme18I GGWCC 1 cut(s) 1034
BmgT120I GGNCC 3 cut(s) 103, 1034, 1052
BmiI GGNNCC 3 cut(s) 303, 331, 657
BmrFI CCNGG 4 cut(s) 306, 378, 739, 795
BmrI ACTGGG 2 cut(s) 50, 951
BmsI GCATC 2 cut(s) 124, 445
BmuI ACTGGG 2 cut(s) 50, 951
BpiI GAAGAC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 378
BsaI GGTCTC 1 cut(s) 921
BsaXI ACNNNNNCTCC 2 cut(s) 342, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse1I ACTGG 6 cut(s) 56, 162, 226, 597, 957, 1036
BseBI CCWGG 3 cut(s) 306, 739, 795
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMII CTCAG 2 cut(s) 278, 1008
BseNI ACTGG 6 cut(s) 56, 162, 226, 597, 957, 1036
BseX3I CGGCCG 1 cut(s) 238
BseXI GCAGC 3 cut(s) 653, 751, 960
Bsh1285I CGRYCG 1 cut(s) 241
BshFI GGCC 5 cut(s) 104, 190, 240, 737, 1054
BshNI GGYRCC 1 cut(s) 655
BsiEI CGRYCG 1 cut(s) 241
BsiHKAI GWGCWC 2 cut(s) 313, 757
BsiSI CCGG 3 cut(s) 138, 348, 378
BslFI GGGAC 3 cut(s) 233, 851, 892
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 1 cut(s) 921
BsmFI GGGAC 3 cut(s) 233, 851, 892
BsmI GAATGC 1 cut(s) 716
BsnI GGCC 5 cut(s) 104, 190, 240, 737, 1054
Bso31I GGTCTC 1 cut(s) 921
Bsp1286I GDGCHC 2 cut(s) 313, 757
Bsp143I GATC 3 cut(s) 42, 77, 582
Bsp1720I GCTNAGC 1 cut(s) 1017
BspACI CCGC 2 cut(s) 241, 287
BspANI GGCC 5 cut(s) 104, 190, 240, 737, 1054
BspCNI CTCAG 2 cut(s) 277, 1009
BspLI GGNNCC 3 cut(s) 303, 331, 657
BspMAI CTGCAG 2 cut(s) 181, 679
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 655
BspTNI GGTCTC 1 cut(s) 921
BsrI ACTGG 6 cut(s) 56, 162, 226, 597, 957, 1036
BssMI GATC 3 cut(s) 42, 77, 582
Bst2UI CCWGG 3 cut(s) 306, 739, 795
Bst6I CTCTTC 3 cut(s) 73, 134, 419
BstDEI CTNAG 3 cut(s) 264, 549, 1017
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 45, 80, 585
BstMAI GTCTC 1 cut(s) 921
BstMBI GATC 3 cut(s) 42, 77, 582
BstMCI CGRYCG 1 cut(s) 241
BstMWI GCNNNNNNNGC 2 cut(s) 269, 761
BstNI CCWGG 3 cut(s) 306, 739, 795
BstSCI CCNGG 4 cut(s) 304, 376, 737, 793
BstSFI CTRYAG 2 cut(s) 177, 675
BstV1I GCAGC 3 cut(s) 653, 751, 960
BstV2I GAAGAC 1 cut(s) 383
BstXI CCANNNNNNTGG 1 cut(s) 221
BstZI CGGCCG 1 cut(s) 238
BsuI GTATCC 1 cut(s) 8
BsuRI GGCC 5 cut(s) 104, 190, 240, 737, 1054
BtgZI GCGATG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 3 cut(s) 431, 684, 904
BtsIMutI CAGTG 7 cut(s) 169, 219, 431, 604, 684, 904, 964
BveI ACCTGC 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 103, 1034, 1052
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 2 cut(s) 602, 805
CspCI CAANNNNNGTGG 2 cut(s) 279, 314
CviQI GTAC 2 cut(s) 602, 805
DdeI CTNAG 3 cut(s) 264, 549, 1017
DpnI GATC 3 cut(s) 44, 79, 584
DpnII GATC 3 cut(s) 42, 77, 582
EaeI YGGCCR 3 cut(s) 188, 238, 735
EagI CGGCCG 1 cut(s) 238
Eam1104I CTCTTC 3 cut(s) 73, 134, 419
EarI CTCTTC 3 cut(s) 73, 134, 419
Ecl136II GAGCTC 1 cut(s) 755
EclXI CGGCCG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 757
Eco31I GGTCTC 1 cut(s) 921
Eco47I GGWCC 1 cut(s) 1034
Eco52I CGGCCG 1 cut(s) 238
Eco53kI GAGCTC 1 cut(s) 755
Eco57I CTGAAG 3 cut(s) 478, 717, 1023
EcoICRI GAGCTC 1 cut(s) 755
EcoO109I RGGNCCY 2 cut(s) 103, 1052
EcoRII CCWGG 3 cut(s) 304, 737, 793
EcoT38I GRGCYC 1 cut(s) 757
FalI AAGNNNNNCTT 2 cut(s) 52, 84
FaqI GGGAC 3 cut(s) 233, 851, 892
FauNDI CATATG 1 cut(s) 193
FbaI TGATCA 2 cut(s) 42, 582
Fnu4HI GCNGC 5 cut(s) 241, 287, 667, 765, 949
FokI GGATG 1 cut(s) 201
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 5 cut(s) 241, 287, 667, 765, 949
FspBI CTAG 2 cut(s) 6, 1013
GluI GCNGC 5 cut(s) 241, 287, 667, 765, 949
HaeIII GGCC 5 cut(s) 104, 190, 240, 737, 1054
HapII CCGG 3 cut(s) 138, 348, 378
HincII GTYRAC 1 cut(s) 847
HindII GTYRAC 1 cut(s) 847
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 4 cut(s) 122, 228, 798, 867
HpaI GTTAAC 1 cut(s) 847
HpaII CCGG 3 cut(s) 138, 348, 378
HphI GGTGA 4 cut(s) 65, 131, 461, 592
Hpy166II GTNNAC 2 cut(s) 602, 847
Hpy188I TCNGA 5 cut(s) 235, 441, 587, 648, 1042
Hpy188III TCNNGA 5 cut(s) 687, 695, 772, 871, 1086
Hpy8I GTNNAC 2 cut(s) 602, 847
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 4 cut(s) 164, 624, 864, 1047
HpyCH4V TGCA 6 cut(s) 179, 436, 669, 677, 830, 948
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 761
HpyF3I CTNAG 3 cut(s) 264, 549, 1017
Ksp22I TGATCA 2 cut(s) 42, 582
KspAI GTTAAC 1 cut(s) 847
Kzo9I GATC 3 cut(s) 42, 77, 582
LmnI GCTCC 2 cut(s) 350, 550
Lsp1109I GCAGC 3 cut(s) 653, 751, 960
LweI GCATC 2 cut(s) 124, 445
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 2 cut(s) 6, 1013
MaeIII GTNAC 4 cut(s) 30, 119, 429, 1045
MalI GATC 3 cut(s) 44, 79, 584
MboI GATC 3 cut(s) 42, 77, 582
MboII GAAGA 7 cut(s) 60, 121, 269, 383, 436, 484, 731
MhlI GDGCHC 2 cut(s) 313, 757
MlsI TGGCCA 2 cut(s) 190, 737
MluCI AATT 4 cut(s) 317, 409, 443, 731
MluNI TGGCCA 2 cut(s) 190, 737
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 3 cut(s) 258, 759, 1033
MnlI CCTC 8 cut(s) 29, 420, 497, 533, 555, 620, 779, 905
Mox20I TGGCCA 2 cut(s) 190, 737
MscI TGGCCA 2 cut(s) 190, 737
MseI TTAA 4 cut(s) 414, 519, 728, 846
Msp20I TGGCCA 2 cut(s) 190, 737
MspI CCGG 3 cut(s) 138, 348, 378
MspR9I CCNGG 4 cut(s) 306, 378, 739, 795
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 3 cut(s) 306, 739, 795
MwoI GCNNNNNNNGC 2 cut(s) 269, 761
NciI CCSGG 1 cut(s) 378
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 42, 77, 582
NlaIV GGNNCC 3 cut(s) 303, 331, 657
NmuCI GTSAC 3 cut(s) 119, 429, 1045
PctI GAATGC 1 cut(s) 716
PfeI GAWTC 3 cut(s) 228, 798, 867
PkrI GCNGC 5 cut(s) 242, 288, 668, 766, 950
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
Psp124BI GAGCTC 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 304, 737, 793
PspGI CCWGG 3 cut(s) 304, 737, 793
PspN4I GGNNCC 3 cut(s) 303, 331, 657
PspPI GGNCC 3 cut(s) 103, 1034, 1052
PstI CTGCAG 2 cut(s) 181, 679
RsaI GTAC 2 cut(s) 603, 806
RsaNI GTAC 2 cut(s) 602, 805
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 4 cut(s) 414, 519, 728, 846
SatI GCNGC 5 cut(s) 241, 287, 667, 765, 949
Sau3AI GATC 3 cut(s) 42, 77, 582
Sau96I GGNCC 3 cut(s) 103, 1034, 1052
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 4 cut(s) 306, 378, 739, 795
SduI GDGCHC 2 cut(s) 313, 757
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 2 cut(s) 124, 445
SfcI CTRYAG 2 cut(s) 177, 675
SinI GGWCC 1 cut(s) 1034
SmlI CTYRAG 1 cut(s) 770
SmoI CTYRAG 1 cut(s) 770
Sse9I AATT 4 cut(s) 317, 409, 443, 731
SsiI CCGC 2 cut(s) 241, 287
SspMI CTAG 2 cut(s) 6, 1013
SstI GAGCTC 1 cut(s) 757
StyD4I CCNGG 4 cut(s) 304, 376, 737, 793
TaqI TCGA 4 cut(s) 51, 132, 210, 226
TasI AATT 4 cut(s) 317, 409, 443, 731
TatI WGTACW 2 cut(s) 601, 804
TauI GCSGC 2 cut(s) 243, 289
TfiI GAWTC 3 cut(s) 228, 798, 867
Tru1I TTAA 4 cut(s) 414, 519, 728, 846
Tru9I TTAA 4 cut(s) 414, 519, 728, 846
TscAI CASTG 7 cut(s) 169, 226, 438, 604, 684, 904, 964
TseFI GTSAC 3 cut(s) 119, 429, 1045
TseI GCWGC 3 cut(s) 666, 764, 948
Tsp45I GTSAC 3 cut(s) 119, 429, 1045
TspDTI ATGAA 2 cut(s) 437, 1079
TspRI CASTG 7 cut(s) 169, 226, 438, 604, 684, 904, 964
VpaK11BI GGWCC 1 cut(s) 1034
XspI CTAG 2 cut(s) 6, 1013
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.