Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

61166010 .. 61167416

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTTCCACAATACCTGCAACCCGGTCCACATGATTTTACCGAGGGATCCAACTTCGCTTCGGGTGGAGCCGGGGCCCTTGCAACAACCAACACAGGAACTGTGGCAAGTTTTCCAATGCAGTTGGGTTATTTTAGGAATGTGACAAAGTTGCTACAACAGAAACTGGGTCATTTAGAAGCCAAACGTATTCTGAGAACCGCTGTGTACTTGATTAGCATCGGAGGCTGTGATTATTTCAGCTTCTATGCTACATACCCAAATGCGACCGTGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAATATTCGGTGTTATTGAAGGGTGCGTTGAAGGACTTCTGAGTTTGGCGAACCTACACAATGCAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAATTACTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATATGGGTTCACAAATGGGTCGGATGGATGCTGTGGTACAGGACTGTACAGGGGAGTTGATTGTGCAATAGAACCGTTTGCATTATGCGAAGACCCTGGTGAGTATGTGTGGTTTGATGGTGGCCATTCGACTGAAAGGGCAAACTTCCAATATGCAAAGCTAATATGGAGTGGAACCCCGAATACCACAGGGCCTTACAATGTCCAACAGCTTTTTCAGCAATCTCACATTCGACATGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

275

Amino Acids

29.97

Weight (kDa)

5.47

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	11 - 246	7.7e-16	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	24, 403
AccB1I	GGYRCC	1 cut(s)	387
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	4 cut(s)	42, 55, 385, 564
AcoI	YGGCCR	1 cut(s)	700
AfaI	GTAC	3 cut(s)	209, 616, 626
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	5 cut(s)	329, 425, 437, 520, 528
AjnI	CCWGG	1 cut(s)	673
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	5 cut(s)	243, 473, 479, 739, 790
AluI	AGCT	5 cut(s)	243, 473, 479, 739, 790
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	4 cut(s)	42, 55, 385, 564
AlwNI	CAGNNNCTG	2 cut(s)	101, 166
AoxI	GGCC	3 cut(s)	75, 700, 770
ApaI	GGGCCC	1 cut(s)	79
ApeKI	GCWGC	1 cut(s)	470
Asp700I	GAANNNNTTC	1 cut(s)	441
AspS9I	GGNCC	4 cut(s)	26, 75, 76, 770
AsuC2I	CCSGG	2 cut(s)	24, 73
AsuHPI	GGTGA	1 cut(s)	689
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	2 cut(s)	79, 276
BalI	TGGCCA	1 cut(s)	702
BamHI	GGATCC	1 cut(s)	47
BanI	GGYRCC	1 cut(s)	387
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	2 cut(s)	596, 689
BciT130I	CCWGG	1 cut(s)	675
BcnI	CCSGG	2 cut(s)	24, 73
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	476
BfuAI	ACCTGC	2 cut(s)	24, 403
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	3 cut(s)	24, 73, 675
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	4 cut(s)	26, 75, 76, 770
BmiI	GGNNCC	6 cut(s)	49, 70, 76, 77, 389, 754
BmrFI	CCNGG	3 cut(s)	24, 73, 675
BmrI	ACTGGG	1 cut(s)	176
BmsI	GCATC	3 cut(s)	228, 535, 596
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	675
BpuMI	CCSGG	2 cut(s)	24, 73
Bsa29I	ATCGAT	1 cut(s)	559
BsaBI	GATNNNNATC	1 cut(s)	218
BsaJI	CCNNGG	3 cut(s)	42, 72, 673
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	405
Bse8I	GATNNNNATC	1 cut(s)	218
BseBI	CCWGG	1 cut(s)	675
BseCI	ATCGAT	1 cut(s)	559
BseDI	CCNNGG	3 cut(s)	42, 72, 673
BseGI	GGATG	2 cut(s)	607, 611
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	405
BseMII	CTCAG	3 cut(s)	185, 437, 543
BseNI	ACTGG	1 cut(s)	171
BseSI	GKGCMC	2 cut(s)	79, 276
BseXI	GCAGC	1 cut(s)	482
BseYI	CCCAGC	1 cut(s)	276
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	3 cut(s)	77, 702, 772
BshNI	GGYRCC	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	559
BsiEI	CGRYCG	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	24, 72
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	77, 702, 772
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	2 cut(s)	79, 276
Bsp1407I	TGTACA	1 cut(s)	624
Bsp143I	GATC	3 cut(s)	47, 377, 556
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	77, 702, 772
BspCNI	CTCAG	3 cut(s)	186, 438, 544
BspDI	ATCGAT	1 cut(s)	559
BspLI	GGNNCC	6 cut(s)	49, 70, 76, 77, 389, 754
BspMI	ACCTGC	2 cut(s)	24, 403
BspPI	GGATC	4 cut(s)	42, 55, 385, 564
BspT107I	GGYRCC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	405
BsrGI	TGTACA	1 cut(s)	624
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	3 cut(s)	42, 72, 673
BssMI	GATC	3 cut(s)	47, 377, 556
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	5 cut(s)	103, 271, 322, 624, 654
BstAUI	TGTACA	1 cut(s)	624
BstDEI	CTNAG	4 cut(s)	194, 343, 446, 552
BstF5I	GGATG	2 cut(s)	607, 611
BstKTI	GATC	3 cut(s)	50, 380, 559
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	3 cut(s)	47, 377, 556
BstMCI	CGRYCG	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 476, 796
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	22, 71, 673
BstSLI	GKGCMC	2 cut(s)	79, 276
BstV1I	GCAGC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	675
BstX2I	RGATCY	2 cut(s)	47, 377
BstYI	RGATCY	2 cut(s)	47, 377
Bsu15I	ATCGAT	1 cut(s)	559
BsuRI	GGCC	3 cut(s)	77, 702, 772
BsuTUI	ATCGAT	1 cut(s)	559
BtsCI	GGATG	2 cut(s)	607, 611
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	2 cut(s)	24, 403
CaiI	CAGNNNCTG	2 cut(s)	101, 166
Cfr13I	GGNCC	4 cut(s)	26, 75, 76, 770
ClaI	ATCGAT	1 cut(s)	559
Csp6I	GTAC	3 cut(s)	208, 615, 625
CviAII	CATG	2 cut(s)	32, 815
CviQI	GTAC	3 cut(s)	208, 615, 625
DdeI	CTNAG	4 cut(s)	194, 343, 446, 552
DpnI	GATC	3 cut(s)	49, 379, 558
DpnII	GATC	3 cut(s)	47, 377, 556
EaeI	YGGCCR	1 cut(s)	700
Eco24I	GRGCYC	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	26
EcoO109I	RGGNCCY	3 cut(s)	75, 76, 770
EcoRII	CCWGG	1 cut(s)	673
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	2 cut(s)	35, 818
FatI	CATG	2 cut(s)	31, 814
FauNDI	CATATG	1 cut(s)	580
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	614, 618
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	1 cut(s)	471
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	77, 702, 772
HapII	CCGG	2 cut(s)	24, 72
Hin1II	CATG	2 cut(s)	35, 818
HinfI	GANTC	1 cut(s)	516
HpaII	CCGG	2 cut(s)	24, 72
HphI	GGTGA	1 cut(s)	689
Hpy166II	GTNNAC	3 cut(s)	29, 208, 588
Hpy188I	TCNGA	5 cut(s)	195, 224, 369, 447, 601
Hpy188III	TCNNGA	2 cut(s)	301, 513
Hpy8I	GTNNAC	3 cut(s)	29, 208, 588
HpyAV	CCTTC	3 cut(s)	345, 419, 431
HpyCH4III	ACNGT	5 cut(s)	103, 271, 322, 624, 654
HpyCH4IV	ACGT	1 cut(s)	187
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 476, 796
HpyF3I	CTNAG	4 cut(s)	194, 343, 446, 552
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	2 cut(s)	35, 818
Kzo9I	GATC	3 cut(s)	47, 377, 556
LmnI	GCTCC	1 cut(s)	68
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	3 cut(s)	228, 535, 596
MaeI	CTAG	1 cut(s)	476
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	142, 308
MalI	GATC	3 cut(s)	49, 379, 558
MboI	GATC	3 cut(s)	47, 377, 556
MboII	GAAGA	1 cut(s)	680
MflI	RGATCY	2 cut(s)	47, 377
MhlI	GDGCHC	2 cut(s)	79, 276
MlsI	TGGCCA	1 cut(s)	702
MluCI	AATT	2 cut(s)	357, 535
MluNI	TGGCCA	1 cut(s)	702
MmeI	TCCRAC	3 cut(s)	75, 579, 808
MnlI	CCTC	6 cut(s)	37, 218, 277, 341, 497, 547
Mox20I	TGGCCA	1 cut(s)	702
MroXI	GAANNNNTTC	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	702
MseI	TTAA	2 cut(s)	534, 567
Msp20I	TGGCCA	1 cut(s)	702
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	24, 72
MspR9I	CCNGG	3 cut(s)	24, 73, 675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	225, 476, 796
NciI	CCSGG	2 cut(s)	24, 73
NdeI	CATATG	1 cut(s)	580
NdeII	GATC	3 cut(s)	47, 377, 556
NlaIII	CATG	2 cut(s)	35, 818
NlaIV	GGNNCC	6 cut(s)	49, 70, 76, 77, 389, 754
NmuCI	GTSAC	1 cut(s)	142
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	1 cut(s)	516
PkrI	GCNGC	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	673
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	6 cut(s)	49, 70, 76, 77, 389, 754
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	4 cut(s)	26, 75, 76, 770
PsrI	GAACNNNNNNTAC	2 cut(s)	745, 777
PstNI	CAGNNNCTG	2 cut(s)	101, 166
PsuI	RGATCY	2 cut(s)	47, 377
RsaI	GTAC	3 cut(s)	209, 616, 626
RsaNI	GTAC	3 cut(s)	208, 615, 625
SaqAI	TTAA	2 cut(s)	534, 567
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	47, 377, 556
Sau96I	GGNCC	4 cut(s)	26, 75, 76, 770
ScrFI	CCNGG	3 cut(s)	24, 73, 675
SduI	GDGCHC	2 cut(s)	79, 276
SfaNI	GCATC	3 cut(s)	228, 535, 596
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	357, 535
SsiI	CCGC	1 cut(s)	201
SspI	AATATT	3 cut(s)	411, 524, 531
SspMI	CTAG	1 cut(s)	476
StyD4I	CCNGG	3 cut(s)	22, 71, 673
TaaI	ACNGT	5 cut(s)	103, 271, 322, 624, 654
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	3 cut(s)	559, 707, 811
TasI	AATT	2 cut(s)	357, 535
TatI	WGTACW	2 cut(s)	207, 624
TfiI	GAWTC	1 cut(s)	516
Tru1I	TTAA	2 cut(s)	534, 567
Tru9I	TTAA	2 cut(s)	534, 567
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	142
TspRI	CASTG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.