Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

61276097 .. 61278112

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020120

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCAAGTGTTGGCTACATTGTTTATGTGTTGGCAAGTCTATTCAACCCAGTTAGCTTCTTTCTTTATGGTCATCATAGTCAGTATACTGGTGGTAGTAATAGTAGTATAGAACATGATGATCAATTTAAGTACGCAAAGCTGCCCATGCTTCCACCTTACCTGCAACCAGGTCCACATGATTTTACCGACGGATGCAACTTTGCTTCTGCTGGAGCCGGGGTTCTTGTTCAAACTAATCAAGGAAGATCAATAAGTCTTCCAGCACAGTTGAGCTTCTTCAAAGATGTCAGAAAGTCGCTGCAACAGAAACTGGGTAGTCTAAAAGCCAAACGCGTGCTCAGGGAAGCTGTTTATCTGATTGGCATCGGAGGGGATGATTATTTTGACTTCTACAACGATTTTCCAAATGCCACCGAGTCCCTTCAACTCGAAGCCGTAGCAGTTGTGGTTGGCAACTTGAGCATCATACTCCAAGAAATATATGAGTCCGGAGGAAGGAAGTTTGCATTTCAAAACGCAGGACCGCTTGGATGCATACCTTATAGGAGACAAGAACACAATAGTATCGAAAGCTGCGTTGAAGGACTCAATAGTCTGGCTAGGCTACACAACACAGCTCTAGTTTCTGTCCTTGAAGAGTTAGAGAGCCAACTATTAGGATTCAAATATTCAATATTTGACTACTATAATTCACTTGATGATCGACTCCGCAACCCTGCCAAATATGGGTTCACAAATGCGACAGATGCGTGTTGTGGTACAGGGCTGTTCAGAGCAGCTTATTGTGGTGGAGATAATGGAACAAAACCATATGAACTATGCAATGACGTTGGAGATTATTTGTGGTTTGATGGTAGCCATACGACTGAAATTGCAAACATCCCAATAGCAGAGCTGTTATGGAGTGGTACACCCAATGTCACAGGGCCTTACAATGTCAAACAACTTTTCCAACAAGATTCAGCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

325

Amino Acids

35.76

Weight (kDa)

5.14

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	52 - 300	1.3e-18	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	594
Acc36I	ACCTGC	1 cut(s)	171
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	336
AccIII	TCCGGA	1 cut(s)	491
AciI	CCGC	2 cut(s)	527, 712
AfaI	GTAC	3 cut(s)	134, 763, 913
AfiI	CCNNNNNNNGG	2 cut(s)	498, 729
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	9 cut(s)	46, 233, 283, 428, 515, 584, 638, 667, 675
AjnI	CCWGG	1 cut(s)	169
AjuI	GAANNNNNNNTTGG	2 cut(s)	716, 748
AloI	GAACNNNNNNTCC	2 cut(s)	207, 239
AluBI	AGCT	9 cut(s)	57, 142, 276, 350, 576, 620, 782, 898, 968
AluI	AGCT	9 cut(s)	57, 142, 276, 350, 576, 620, 782, 898, 968
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	544
AlwNI	CAGNNNCTG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	491
AoxI	GGCC	1 cut(s)	929
ApeKI	GCWGC	4 cut(s)	142, 301, 576, 779
AspS9I	GGNCC	3 cut(s)	173, 524, 929
AsuC2I	CCSGG	1 cut(s)	220
AvaII	GGWCC	2 cut(s)	173, 524
BaeI	ACNNNNGTAYC	2 cut(s)	550, 583
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	129, 288, 563, 791
BccI	CCATC	1 cut(s)	848
BceAI	ACGGC	1 cut(s)	422
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	544
BfaI	CTAG	2 cut(s)	603, 623
BfuAI	ACCTGC	1 cut(s)	171
BisI	GCNGC	4 cut(s)	143, 302, 577, 780
BlsI	GCNGC	4 cut(s)	144, 303, 578, 781
Bme1390I	CCNGG	2 cut(s)	171, 220
Bme18I	GGWCC	2 cut(s)	173, 524
BmgT120I	GGNCC	3 cut(s)	173, 524, 929
BmiI	GGNNCC	1 cut(s)	217
BmrFI	CCNGG	2 cut(s)	171, 220
BmrI	ACTGGG	2 cut(s)	44, 323
BmsI	GCATC	5 cut(s)	185, 375, 474, 524, 739
BmuI	ACTGGG	2 cut(s)	44, 323
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	341
BpuEI	CTTGAG	1 cut(s)	481
BpuMI	CCSGG	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 729
Bse1I	ACTGG	3 cut(s)	50, 94, 318
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	365
BseAI	TCCGGA	1 cut(s)	491
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	4 cut(s)	200, 382, 539, 882
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	2 cut(s)	498, 729
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	3 cut(s)	50, 94, 318
BseXI	GCAGC	4 cut(s)	129, 288, 563, 791
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	931
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	219, 492
BslFI	GGGAC	1 cut(s)	406
BslI	CCNNNNNNNGG	2 cut(s)	498, 729
BsmAI	GTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	931
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	121, 248, 703
BspACI	CCGC	2 cut(s)	527, 712
BspANI	GGCC	1 cut(s)	931
BspCNI	CTCAG	1 cut(s)	354
BspEI	TCCGGA	1 cut(s)	491
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	1 cut(s)	217
BspMI	ACCTGC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	832
BsrI	ACTGG	3 cut(s)	50, 94, 318
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	3 cut(s)	121, 248, 703
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	270
Bst6I	CTCTTC	1 cut(s)	633
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	200, 382, 539, 882
BstFNI	CGCG	1 cut(s)	336
BstKTI	GATC	3 cut(s)	124, 251, 706
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	3 cut(s)	121, 248, 703
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 462, 749
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	169, 218
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	4 cut(s)	129, 288, 563, 791
BstV2I	GAAGAC	1 cut(s)	251
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	931
BtsCI	GGATG	4 cut(s)	200, 382, 539, 882
BveI	ACCTGC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	338
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	173, 524, 929
CsiI	ACCWGGT	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	133, 762, 912
CviAII	CATG	3 cut(s)	116, 148, 179
CviQI	GTAC	3 cut(s)	133, 762, 912
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	3 cut(s)	123, 250, 705
DpnII	GATC	3 cut(s)	121, 248, 703
DrdI	GACNNNNNNGTC	1 cut(s)	594
DseDI	GACNNNNNNGTC	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	633
EarI	CTCTTC	1 cut(s)	633
Eco47I	GGWCC	2 cut(s)	173, 524
EcoO109I	RGGNCCY	1 cut(s)	929
EcoRII	CCWGG	1 cut(s)	169
EcoT22I	ATGCAT	1 cut(s)	539
FaeI	CATG	3 cut(s)	119, 151, 182
FaqI	GGGAC	1 cut(s)	406
FatI	CATG	3 cut(s)	115, 147, 178
FauNDI	CATATG	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	143, 302, 577, 780
FokI	GGATG	4 cut(s)	207, 389, 546, 869
Fsp4HI	GCNGC	4 cut(s)	143, 302, 577, 780
FspBI	CTAG	2 cut(s)	603, 623
GluI	GCNGC	4 cut(s)	143, 302, 577, 780
GsuI	CTGGAG	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	931
HapII	CCGG	2 cut(s)	219, 492
Hin1II	CATG	3 cut(s)	119, 151, 182
HinfI	GANTC	6 cut(s)	419, 488, 588, 663, 708, 962
HpaII	CCGG	2 cut(s)	219, 492
Hpy166II	GTNNAC	4 cut(s)	87, 176, 735, 914
Hpy188I	TCNGA	4 cut(s)	293, 360, 371, 776
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	4 cut(s)	87, 176, 735, 914
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	434, 492, 578
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	1 cut(s)	831
HpyCH4V	TGCA	7 cut(s)	166, 198, 304, 509, 537, 825, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 462, 749
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	1 cut(s)	831
Hsp92II	CATG	3 cut(s)	119, 151, 182
Kpn2I	TCCGGA	1 cut(s)	491
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 248, 703
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	4 cut(s)	129, 288, 563, 791
LweI	GCATC	5 cut(s)	185, 375, 474, 524, 739
MabI	ACCWGGT	1 cut(s)	169
MaeI	CTAG	2 cut(s)	603, 623
MaeII	ACGT	1 cut(s)	831
MaeIII	GTNAC	1 cut(s)	922
MalI	GATC	3 cut(s)	123, 250, 705
MboI	GATC	3 cut(s)	121, 248, 703
MboII	GAAGA	4 cut(s)	251, 258, 271, 650
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	3 cut(s)	125, 691, 873
MluI	ACGCGT	1 cut(s)	334
MlyI	GAGTC	4 cut(s)	428, 497, 582, 702
MmeI	TCCRAC	1 cut(s)	814
MnlI	CCTC	2 cut(s)	365, 488
Mph1103I	ATGCAT	1 cut(s)	539
MroI	TCCGGA	1 cut(s)	491
MseI	TTAA	2 cut(s)	129, 973
MspI	CCGG	2 cut(s)	219, 492
MspR9I	CCNGG	2 cut(s)	171, 220
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	148, 462, 749
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	814
NdeII	GATC	3 cut(s)	121, 248, 703
NlaIII	CATG	3 cut(s)	119, 151, 182
NlaIV	GGNNCC	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	663, 962
PkrI	GCNGC	4 cut(s)	144, 303, 578, 781
PleI	GAGTC	4 cut(s)	427, 496, 582, 702
PpsI	GAGTC	4 cut(s)	427, 496, 582, 702
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	217
PspPI	GGNCC	3 cut(s)	173, 524, 929
PstNI	CAGNNNCTG	1 cut(s)	313
RsaI	GTAC	3 cut(s)	134, 763, 913
RsaNI	GTAC	3 cut(s)	133, 762, 912
SaqAI	TTAA	2 cut(s)	129, 973
SatI	GCNGC	4 cut(s)	143, 302, 577, 780
Sau3AI	GATC	3 cut(s)	121, 248, 703
Sau96I	GGNCC	3 cut(s)	173, 524, 929
SchI	GAGTC	4 cut(s)	428, 497, 582, 702
ScrFI	CCNGG	2 cut(s)	171, 220
SduI	GDGCHC	1 cut(s)	342
SexAI	ACCWGGT	1 cut(s)	169
SfaNI	GCATC	5 cut(s)	185, 375, 474, 524, 739
SinI	GGWCC	2 cut(s)	173, 524
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	125, 691, 873
SsiI	CCGC	2 cut(s)	527, 712
SspI	AATATT	2 cut(s)	671, 678
SspMI	CTAG	2 cut(s)	603, 623
StyD4I	CCNGG	2 cut(s)	169, 218
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	1 cut(s)	834
TaqI	TCGA	3 cut(s)	432, 570, 706
TasI	AATT	3 cut(s)	125, 691, 873
TfiI	GAWTC	2 cut(s)	663, 962
Tru1I	TTAA	2 cut(s)	129, 973
Tru9I	TTAA	2 cut(s)	129, 973
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	4 cut(s)	142, 301, 576, 779
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	1 cut(s)	831
TspGWI	ACGGA	1 cut(s)	207
VpaK11BI	GGWCC	2 cut(s)	173, 524
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	2 cut(s)	603, 623
Zsp2I	ATGCAT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.