Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

22877032 .. 22879098

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGCTAGTCTTGGCTACATTGTTTATGCGGTGGCAAGTCTATTCAACCCTGTTAGCTTCTTTCTTTATGGTCATCATAGTCAGTATACTGGTGGTAGTAATAGTAGTATAGAACAAGATGATCAATTTAAGGGGGCATTGTTTGTGTTCGGAGACTCGCTATTTGAGGCCGGCAACAATGGATACCTTCCTAATGTTACCACAGAACTAGACGCAGCAATAGCCTGGCCATATGGAGAAACCTTCTTCCACTATCCCACTGGAAGATTCTCCGACGGACGCATAGTCCCCGATTTCATCGCTAAGTACGCAAAGCTGCCCATGCTTCCACCTTACCTGCAACCAGGTCCACATGATTTTACCGACGGATGCAACTTTGCTTCGGCTGGAGCCGGGGTTCTTGTTCAAACTAATCAAGGAAGATCAATAAGTCTTCCAGCACAGTTGAGCTTCTTCAAAGATGTCAGAAAGTCGCTGCAACAGAAACTGGGTGGTCTAAAAGCCAAACGCGTGCTGAGGGAAGCTGTTTATCTGATTGGCATCGGAGGGGATGATTATTTTGACTTCTACAACGACTTTCCAAATGCCACCGAGTCCTTTCAACTCGAAGCCGTAGCAGTTGTGGTTGGCAACTTGAGCATCATACTCCAAGATATATATGATTTAGGAGGAAGGAAGTTTGCATTTCAAAACGCAGGACCGCTTGGATGCATACCTTATAGGAGACAAGAACACAATAGTATCGAAGGATGCGTTGAAGGACTCAATAGTCTGGCTAGGCTACACAACACAGCTCTAGTTTCTGTCCTTGAAGAGTTAGAGAGCCAACTATTAGGATTCAAATATTCAATATTTGACTACTATAATTCACTTGATGATCGACTCCGTAACCCTGCCAAATATGGGTTCACAAATGCGACAGATGCATGTTGTGGTACAGGGCTGTTCAGTGCAGCTTATTGTGGTGGAGAAAATGGAACAAAACCATATGAACTATGCAATGACGTTGGAGATTATTTGTGGTTTGATGGTAGCCATACGACTGAAATTGCAAACATCCCAATAGCAGAGCTGATATGGAGTGGTACACCCAATGTCACAGGGCCTTACAATGTCAAACAACTTTTCCAACAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

379

Amino Acids

41.66

Weight (kDa)

4.88

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	47 - 358	3.7e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	768
Acc36I	ACCTGC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	510
AciI	CCGC	2 cut(s)	29, 701
AcoI	YGGCCR	1 cut(s)	227
AfaI	GTAC	3 cut(s)	308, 937, 1087
AfiI	CCNNNNNNNGG	1 cut(s)	903
AflIII	ACRYGT	1 cut(s)	508
AgsI	TTSAA	9 cut(s)	46, 407, 457, 602, 689, 758, 812, 841, 849
AhdI	GACNNNNNGTC	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	224, 343
AjuI	GAANNNNNNNTTGG	2 cut(s)	890, 922
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	7 cut(s)	57, 316, 450, 524, 794, 956, 1072
AluI	AGCT	7 cut(s)	57, 316, 450, 524, 794, 956, 1072
Alw26I	GTCTC	2 cut(s)	147, 718
AlwNI	CAGNNNCTG	1 cut(s)	487
AoxI	GGCC	3 cut(s)	168, 227, 1103
ApeKI	GCWGC	4 cut(s)	215, 316, 475, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
AspS9I	GGNCC	3 cut(s)	347, 698, 1103
AsuC2I	CCSGG	1 cut(s)	394
AvaII	GGWCC	2 cut(s)	347, 698
BaeI	ACNNNNGTAYC	2 cut(s)	724, 757
BalI	TGGCCA	1 cut(s)	229
BbsI	GAAGAC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	515
BbvI	GCAGC	4 cut(s)	227, 303, 462, 965
BccI	CCATC	1 cut(s)	1022
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	226, 345
BciVI	GTATCC	1 cut(s)	176
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	394
BcoDI	GTCTC	2 cut(s)	147, 718
BfaI	CTAG	4 cut(s)	6, 209, 777, 797
BfuAI	ACCTGC	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	176
BisI	GCNGC	4 cut(s)	216, 317, 476, 954
BlsI	GCNGC	4 cut(s)	217, 318, 477, 955
Bme1390I	CCNGG	3 cut(s)	226, 345, 394
Bme18I	GGWCC	2 cut(s)	347, 698
BmeRI	GACNNNNNGTC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	347, 698, 1103
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	226, 345, 394
BmrI	ACTGGG	1 cut(s)	497
BmsI	GCATC	6 cut(s)	359, 549, 648, 698, 740, 913
BmuI	ACTGGG	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	408
Bpu10I	CCTNAGC	1 cut(s)	515
BpuEI	CTTGAG	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	394
BsaBI	GATNNNNATC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	393
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	903
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	94, 265, 492
Bse3DI	GCAATG	1 cut(s)	1006
Bse8I	GATNNNNATC	1 cut(s)	539
BseBI	CCWGG	2 cut(s)	226, 345
BseDI	CCNNGG	1 cut(s)	393
BseGI	GGATG	5 cut(s)	374, 556, 713, 755, 1056
BseJI	GATNNNNATC	1 cut(s)	539
BseLI	CCNNNNNNNGG	1 cut(s)	903
BseMI	GCAATG	1 cut(s)	1006
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	3 cut(s)	94, 265, 492
BseXI	GCAGC	4 cut(s)	227, 303, 462, 965
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	170, 229, 1105
BsiSI	CCGG	2 cut(s)	171, 393
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	903
BsmAI	GTCTC	2 cut(s)	147, 718
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	170, 229, 1105
Bsp143I	GATC	3 cut(s)	121, 422, 877
BspACI	CCGC	2 cut(s)	29, 701
BspANI	GGCC	3 cut(s)	170, 229, 1105
BspCNI	CTCAG	1 cut(s)	507
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	1 cut(s)	391
BspMI	ACCTGC	1 cut(s)	345
BsrDI	GCAATG	1 cut(s)	1006
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	94, 265, 492
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	393
BssMI	GATC	3 cut(s)	121, 422, 877
BssNAI	GTATAC	1 cut(s)	87
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	226, 345
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	172, 512
BstDEI	CTNAG	2 cut(s)	303, 515
BstF5I	GGATG	5 cut(s)	374, 556, 713, 755, 1056
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	3 cut(s)	124, 425, 880
BstMAI	GTCTC	2 cut(s)	147, 718
BstMBI	GATC	3 cut(s)	121, 422, 877
BstMWI	GCNNNNNNNGC	5 cut(s)	221, 308, 322, 636, 923
BstNI	CCWGG	2 cut(s)	226, 345
BstNSI	RCATGY	1 cut(s)	930
BstSCI	CCNGG	3 cut(s)	224, 343, 392
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	4 cut(s)	227, 303, 462, 965
BstV2I	GAAGAC	1 cut(s)	425
BstZ17I	GTATAC	1 cut(s)	87
BsuI	GTATCC	1 cut(s)	176
BsuRI	GGCC	3 cut(s)	170, 229, 1105
BtgZI	GCGATG	1 cut(s)	283
BtsCI	GGATG	5 cut(s)	374, 556, 713, 755, 1056
BtsIMutI	CAGTG	2 cut(s)	258, 955
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	172, 512
CaiI	CAGNNNCTG	1 cut(s)	487
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	347, 698, 1103
CseI	GACGC	2 cut(s)	221, 288
CsiI	ACCWGGT	1 cut(s)	343
Csp6I	GTAC	3 cut(s)	307, 936, 1086
CviAII	CATG	3 cut(s)	322, 353, 927
CviQI	GTAC	3 cut(s)	307, 936, 1086
DdeI	CTNAG	2 cut(s)	303, 515
DpnI	GATC	3 cut(s)	123, 424, 879
DpnII	GATC	3 cut(s)	121, 422, 877
DrdI	GACNNNNNNGTC	1 cut(s)	768
DriI	GACNNNNNGTC	1 cut(s)	284
DseDI	GACNNNNNNGTC	1 cut(s)	768
EaeI	YGGCCR	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	807
Eam1105I	GACNNNNNGTC	1 cut(s)	284
EarI	CTCTTC	1 cut(s)	807
Eco47I	GGWCC	2 cut(s)	347, 698
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	224, 343
EcoT22I	ATGCAT	2 cut(s)	713, 928
FaeI	CATG	3 cut(s)	325, 356, 930
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	3 cut(s)	321, 352, 926
FauNDI	CATATG	2 cut(s)	232, 988
FbaI	TGATCA	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	4 cut(s)	216, 317, 476, 954
FokI	GGATG	5 cut(s)	381, 563, 720, 762, 1043
Fsp4HI	GCNGC	4 cut(s)	216, 317, 476, 954
FspBI	CTAG	4 cut(s)	6, 209, 777, 797
GluI	GCNGC	4 cut(s)	216, 317, 476, 954
GsuI	CTGGAG	1 cut(s)	408
HaeIII	GGCC	3 cut(s)	170, 229, 1105
HapII	CCGG	2 cut(s)	171, 393
HgaI	GACGC	2 cut(s)	221, 288
Hin1II	CATG	3 cut(s)	325, 356, 930
HinfI	GANTC	6 cut(s)	155, 267, 593, 762, 837, 882
HpaII	CCGG	2 cut(s)	171, 393
Hpy166II	GTNNAC	4 cut(s)	87, 350, 909, 1088
Hpy188I	TCNGA	5 cut(s)	152, 274, 467, 534, 545
Hpy8I	GTNNAC	4 cut(s)	87, 350, 909, 1088
Hpy99I	CGWCG	2 cut(s)	278, 368
HpyAV	CCTTC	5 cut(s)	197, 253, 666, 740, 752
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	1005
HpyCH4V	TGCA	9 cut(s)	340, 372, 478, 683, 711, 926, 953, 999, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	221, 308, 322, 636, 923
HpyF3I	CTNAG	2 cut(s)	303, 515
HpySE526I	ACGT	1 cut(s)	1005
Hsp92II	CATG	3 cut(s)	325, 356, 930
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 422, 877
LmnI	GCTCC	1 cut(s)	389
Lsp1109I	GCAGC	4 cut(s)	227, 303, 462, 965
LweI	GCATC	6 cut(s)	359, 549, 648, 698, 740, 913
MabI	ACCWGGT	1 cut(s)	343
MaeI	CTAG	4 cut(s)	6, 209, 777, 797
MaeII	ACGT	1 cut(s)	1005
MaeIII	GTNAC	3 cut(s)	196, 887, 1096
MalI	GATC	3 cut(s)	123, 424, 879
MboI	GATC	3 cut(s)	121, 422, 877
MboII	GAAGA	6 cut(s)	238, 276, 425, 432, 445, 824
MlsI	TGGCCA	1 cut(s)	229
MluCI	AATT	3 cut(s)	125, 865, 1047
MluI	ACGCGT	1 cut(s)	508
MluNI	TGGCCA	1 cut(s)	229
MlyI	GAGTC	4 cut(s)	149, 602, 756, 876
MmeI	TCCRAC	2 cut(s)	297, 988
MnlI	CCTC	4 cut(s)	160, 510, 539, 662
Mox20I	TGGCCA	1 cut(s)	229
Mph1103I	ATGCAT	2 cut(s)	713, 928
MroNI	GCCGGC	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	229
MseI	TTAA	2 cut(s)	129, 1138
Msp20I	TGGCCA	1 cut(s)	229
MspI	CCGG	2 cut(s)	171, 393
MspR9I	CCNGG	3 cut(s)	226, 345, 394
MvaI	CCWGG	2 cut(s)	226, 345
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	5 cut(s)	221, 308, 322, 636, 923
NaeI	GCCGGC	1 cut(s)	172
NciI	CCSGG	1 cut(s)	394
NdeI	CATATG	2 cut(s)	232, 988
NdeII	GATC	3 cut(s)	121, 422, 877
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	3 cut(s)	325, 356, 930
NlaIV	GGNNCC	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	1096
NsiI	ATGCAT	2 cut(s)	713, 928
NspI	RCATGY	1 cut(s)	930
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	267, 837
PkrI	GCNGC	4 cut(s)	217, 318, 477, 955
PleI	GAGTC	4 cut(s)	149, 601, 756, 876
PpsI	GAGTC	4 cut(s)	149, 601, 756, 876
Psp6I	CCWGG	2 cut(s)	224, 343
PspGI	CCWGG	2 cut(s)	224, 343
PspN4I	GGNNCC	1 cut(s)	391
PspPI	GGNCC	3 cut(s)	347, 698, 1103
PstNI	CAGNNNCTG	1 cut(s)	487
RsaI	GTAC	3 cut(s)	308, 937, 1087
RsaNI	GTAC	3 cut(s)	307, 936, 1086
SaqAI	TTAA	2 cut(s)	129, 1138
SatI	GCNGC	4 cut(s)	216, 317, 476, 954
Sau3AI	GATC	3 cut(s)	121, 422, 877
Sau96I	GGNCC	3 cut(s)	347, 698, 1103
SchI	GAGTC	4 cut(s)	149, 602, 756, 876
ScrFI	CCNGG	3 cut(s)	226, 345, 394
SexAI	ACCWGGT	1 cut(s)	343
SfaNI	GCATC	6 cut(s)	359, 549, 648, 698, 740, 913
SinI	GGWCC	2 cut(s)	347, 698
SmlI	CTYRAG	1 cut(s)	634
SmoI	CTYRAG	1 cut(s)	634
Sse9I	AATT	3 cut(s)	125, 865, 1047
SsiI	CCGC	2 cut(s)	29, 701
SspI	AATATT	2 cut(s)	845, 852
SspMI	CTAG	4 cut(s)	6, 209, 777, 797
StyD4I	CCNGG	3 cut(s)	224, 343, 392
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	1008
TaqI	TCGA	3 cut(s)	606, 744, 880
TasI	AATT	3 cut(s)	125, 865, 1047
TfiI	GAWTC	2 cut(s)	267, 837
Tru1I	TTAA	2 cut(s)	129, 1138
Tru9I	TTAA	2 cut(s)	129, 1138
TscAI	CASTG	2 cut(s)	265, 955
TseFI	GTSAC	1 cut(s)	1096
TseI	GCWGC	4 cut(s)	215, 316, 475, 953
Tsp45I	GTSAC	1 cut(s)	1096
TspDTI	ATGAA	2 cut(s)	286, 1005
TspGWI	ACGGA	3 cut(s)	291, 381, 875
TspRI	CASTG	2 cut(s)	265, 955
VpaK11BI	GGWCC	2 cut(s)	347, 698
XceI	RCATGY	1 cut(s)	930
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	86
XspI	CTAG	4 cut(s)	6, 209, 777, 797
Zsp2I	ATGCAT	2 cut(s)	713, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.