Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

69045288 .. 69046897

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG477600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGGCCAGCCTTAGCTACATTGTTTATGTGTTGGTAAGCCTTTTGAACCCAATTAGCTACCTTCTTTATGGTCATGATCAATTCAACTATAAACCTGCAGACGATAATGAGGTACAAAAGAAGGCCTTGTTTGTGTTTGGAGACTCGCTGTTTGATCCTGGCAACGATCAATACCTCCCTAATGTTACCGTAGAAGATTACCCAGCAACAACCTGGCCATATGGAGAAACCTTCTTTCACCATCCCAACGGAAGACTTTCAGATGGCCGTATCGTCCCGGACTTCATCGCTAATTTTGCGAACTTGCGTATGATTCCACCCTACCTGCAACCAGATCCAAAAGATTTTACTGATGGAGCCAGCTTTGCTTCAGCTGGAGCTGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAACCTTCCATTGCAGTTAAGCTATTTTAAGAACGTGACGGAGTTGCTGCAAGAGCAACTGGAAATTGTGATCGGCAACTTAACCACTGTGCTCCAAGGAATATACGACTTAGGGGGAAGGAAAATCGCATTTCAAAATGCCGGACCTCTTGGGTGCTTACCTCACGCAAAACAATCATACGATTCCCACCTTGTTCGTGGGTGCGTTGAAGGGCTCCAGAGTCTAGCGAGGCAGCACAACAAAGCTCTAGCTAGTGTCCTTAAAGAGCTAGAGAGCCAGCTACCGGGATTCAAATATTCAATATTTGAGTACTATGATGCACTTGGCGACCGAGTACTTAACCCCGCTAAATACGGCTTTACTAATGGGACAGATGCGTGTTGCGGTAGAGGGGCATACAGAGGTTCTGATTGCGGTGGGCTTAATGGAACAGTACCATATGAGTTATGCAGTAACCCTGGTGACAGTGTGTGGTTTGATGGTGGTCATACATCTGAAAGGGCAAACCTGCAGTTAGCTCAGCTGATATGGAGTGGAACACCAAATGTGACGGGGCCTTATAATGTCAAACAGCTTTTTGAACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

334

Amino Acids

36.73

Weight (kDa)

4.86

Isoelectric Point (pI)

29.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	43 - 131	4.5e-06	GDSL-like Lipase/Acylhydrolase
Lipase_GDSL	PF00657	151 - 314	8.5e-12	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	975
Acc36I	ACCTGC	3 cut(s)	103, 333, 930
AciI	CCGC	3 cut(s)	759, 798, 828
AclWI	GGATC	3 cut(s)	149, 329, 395
AcoI	YGGCCR	3 cut(s)	3, 215, 265
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	4 cut(s)	114, 725, 750, 849
AfiI	CCNNNNNNNGG	1 cut(s)	697
AgsI	TTSAA	8 cut(s)	46, 85, 395, 548, 623, 706, 714, 995
AjnI	CCWGG	4 cut(s)	157, 212, 403, 871
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	3 cut(s)	149, 329, 395
AoxI	GGCC	5 cut(s)	3, 123, 215, 265, 968
ApeKI	GCWGC	2 cut(s)	460, 646
ArsI	GACNNNNNNTTYG	2 cut(s)	134, 166
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	2 cut(s)	557, 968
AsuC2I	CCSGG	2 cut(s)	278, 699
AsuHPI	GGTGA	2 cut(s)	230, 887
AvaII	GGWCC	1 cut(s)	557
BalI	TGGCCA	2 cut(s)	5, 217
BanII	GRGCYC	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	2 cut(s)	447, 658
BccI	CCATC	4 cut(s)	249, 257, 347, 887
BceAI	ACGGC	2 cut(s)	252, 784
BciT130I	CCWGG	4 cut(s)	159, 214, 405, 873
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	2 cut(s)	278, 699
BcoDI	GTCTC	1 cut(s)	135
BfaI	CTAG	5 cut(s)	389, 638, 662, 666, 683
BfmI	CTRYAG	2 cut(s)	96, 923
BfuAI	ACCTGC	3 cut(s)	103, 333, 930
BisI	GCNGC	2 cut(s)	461, 647
BlpI	GCTNAGC	1 cut(s)	933
BlsI	GCNGC	2 cut(s)	462, 648
BmcAI	AGTACT	2 cut(s)	725, 750
Bme1390I	CCNGG	6 cut(s)	159, 214, 278, 405, 699, 873
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	557, 968
BmiI	GGNNCC	3 cut(s)	358, 629, 969
BmrFI	CCNGG	6 cut(s)	159, 214, 278, 405, 699, 873
BmsI	GCATC	2 cut(s)	721, 778
BpiI	GAAGAC	1 cut(s)	259
BpmI	CTGGAG	3 cut(s)	396, 402, 614
Bpu10I	CCTNAGC	1 cut(s)	11
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuMI	CCSGG	2 cut(s)	278, 699
BsaJI	CCNNGG	2 cut(s)	508, 871
BsaXI	ACNNNNNCTCC	4 cut(s)	369, 375, 399, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	1 cut(s)	477
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	4 cut(s)	159, 214, 405, 873
BseDI	CCNNGG	2 cut(s)	508, 871
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	947
BseNI	ACTGG	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	447, 658
BseYI	CCCAGC	1 cut(s)	202
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	5 cut(s)	5, 125, 217, 267, 970
BsiEI	CGRYCG	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	3 cut(s)	278, 555, 698
BslFI	GGGAC	2 cut(s)	260, 796
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	1 cut(s)	135
BsmFI	GGGAC	2 cut(s)	260, 796
BsnI	GGCC	5 cut(s)	5, 125, 217, 267, 970
Bsp1286I	GDGCHC	2 cut(s)	507, 630
Bsp143I	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
Bsp1720I	GCTNAGC	1 cut(s)	933
BspACI	CCGC	3 cut(s)	759, 798, 828
BspANI	GGCC	5 cut(s)	5, 125, 217, 267, 970
BspCNI	CTCAG	1 cut(s)	946
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	3 cut(s)	358, 629, 969
BspMAI	CTGCAG	2 cut(s)	100, 927
BspMI	ACCTGC	3 cut(s)	103, 333, 930
BspPI	GGATC	3 cut(s)	149, 329, 395
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	508, 871
BssMI	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
BssT1I	CCWWGG	1 cut(s)	508
Bst2UI	CCWGG	4 cut(s)	159, 214, 405, 873
Bst4CI	ACNGT	4 cut(s)	190, 502, 847, 881
BstC8I	GCNNGC	3 cut(s)	7, 361, 692
BstDEI	CTNAG	3 cut(s)	11, 523, 933
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	6 cut(s)	79, 157, 169, 337, 403, 486
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 365, 466
BstNI	CCWGG	4 cut(s)	159, 214, 405, 873
BstSCI	CCNGG	6 cut(s)	157, 212, 276, 403, 697, 871
BstSFI	CTRYAG	2 cut(s)	96, 923
BstV1I	GCAGC	2 cut(s)	447, 658
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	5, 125, 217, 267, 970
BtgZI	GCGATG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	498, 886
BveI	ACCTGC	3 cut(s)	103, 333, 930
Cac8I	GCNNGC	3 cut(s)	7, 361, 692
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	557, 968
Csp6I	GTAC	4 cut(s)	113, 724, 749, 848
CviAII	CATG	1 cut(s)	74
CviQI	GTAC	4 cut(s)	113, 724, 749, 848
DdeI	CTNAG	3 cut(s)	11, 523, 933
DpnI	GATC	6 cut(s)	78, 156, 168, 336, 402, 485
DpnII	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
EaeI	YGGCCR	3 cut(s)	3, 215, 265
Eco130I	CCWWGG	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	1 cut(s)	968
EcoRII	CCWGG	4 cut(s)	157, 212, 403, 871
EcoT14I	CCWWGG	1 cut(s)	508
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	1 cut(s)	508
FaeI	CATG	1 cut(s)	77
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	2 cut(s)	260, 796
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	766
FauNDI	CATATG	2 cut(s)	220, 853
FbaI	TGATCA	1 cut(s)	76
Fnu4HI	GCNGC	2 cut(s)	461, 647
FokI	GGATG	1 cut(s)	228
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	2 cut(s)	461, 647
FspBI	CTAG	5 cut(s)	389, 638, 662, 666, 683
GluI	GCNGC	2 cut(s)	461, 647
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	3 cut(s)	396, 402, 614
HaeIII	GGCC	5 cut(s)	5, 125, 217, 267, 970
HapII	CCGG	3 cut(s)	278, 555, 698
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	5 cut(s)	143, 313, 596, 634, 702
HpaII	CCGG	3 cut(s)	278, 555, 698
HphI	GGTGA	2 cut(s)	230, 887
Hpy188I	TCNGA	3 cut(s)	262, 823, 910
Hpy188III	TCNNGA	2 cut(s)	74, 631
HpyAV	CCTTC	6 cut(s)	71, 115, 241, 428, 525, 617
HpyCH4III	ACNGT	4 cut(s)	190, 502, 847, 881
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	7 cut(s)	98, 328, 427, 463, 734, 864, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 365, 466
HpyF3I	CTNAG	3 cut(s)	11, 523, 933
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	76
Kzo9I	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
LmnI	GCTCC	4 cut(s)	356, 377, 510, 633
Lsp1109I	GCAGC	2 cut(s)	447, 658
LweI	GCATC	2 cut(s)	721, 778
MaeI	CTAG	5 cut(s)	389, 638, 662, 666, 683
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	5 cut(s)	184, 448, 866, 875, 961
MalI	GATC	6 cut(s)	78, 156, 168, 336, 402, 485
MboI	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
MboII	GAAGA	2 cut(s)	206, 264
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	507, 630
MlsI	TGGCCA	2 cut(s)	5, 217
MluCI	AATT	4 cut(s)	51, 80, 292, 477
MluNI	TGGCCA	2 cut(s)	5, 217
MlyI	GAGTC	2 cut(s)	137, 643
MnlI	CCTC	7 cut(s)	103, 185, 570, 585, 636, 797, 809
Mox20I	TGGCCA	2 cut(s)	5, 217
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	2 cut(s)	5, 217
MseI	TTAA	6 cut(s)	431, 441, 494, 675, 753, 837
Msp20I	TGGCCA	2 cut(s)	5, 217
MspA1I	CMGCKG	2 cut(s)	374, 937
MspI	CCGG	3 cut(s)	278, 555, 698
MspR9I	CCNGG	6 cut(s)	159, 214, 278, 405, 699, 873
MvaI	CCWGG	4 cut(s)	159, 214, 405, 873
MwoI	GCNNNNNNNGC	3 cut(s)	296, 365, 466
NciI	CCSGG	2 cut(s)	278, 699
NdeI	CATATG	2 cut(s)	220, 853
NdeII	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	3 cut(s)	358, 629, 969
NmuCI	GTSAC	3 cut(s)	448, 875, 961
PagI	TCATGA	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	3 cut(s)	313, 596, 702
PfoI	TCCNGGA	2 cut(s)	276, 403
PkrI	GCNGC	2 cut(s)	462, 648
PleI	GAGTC	2 cut(s)	137, 642
PpsI	GAGTC	2 cut(s)	137, 642
PsiI	TTATAA	1 cut(s)	975
Psp6I	CCWGG	4 cut(s)	157, 212, 403, 871
PspFI	CCCAGC	1 cut(s)	202
PspGI	CCWGG	4 cut(s)	157, 212, 403, 871
PspN4I	GGNNCC	3 cut(s)	358, 629, 969
PspPI	GGNCC	2 cut(s)	557, 968
PstI	CTGCAG	2 cut(s)	100, 927
PsuI	RGATCY	1 cut(s)	334
PvuII	CAGCTG	2 cut(s)	374, 937
RsaI	GTAC	4 cut(s)	114, 725, 750, 849
RsaNI	GTAC	4 cut(s)	113, 724, 749, 848
SaqAI	TTAA	6 cut(s)	431, 441, 494, 675, 753, 837
SatI	GCNGC	2 cut(s)	461, 647
Sau3AI	GATC	6 cut(s)	76, 154, 166, 334, 400, 483
Sau96I	GGNCC	2 cut(s)	557, 968
ScaI	AGTACT	2 cut(s)	725, 750
SchI	GAGTC	2 cut(s)	137, 643
ScrFI	CCNGG	6 cut(s)	159, 214, 278, 405, 699, 873
SduI	GDGCHC	2 cut(s)	507, 630
SfaNI	GCATC	2 cut(s)	721, 778
SfcI	CTRYAG	2 cut(s)	96, 923
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	4 cut(s)	51, 80, 292, 477
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	3 cut(s)	759, 798, 828
SspI	AATATT	2 cut(s)	710, 717
SspMI	CTAG	5 cut(s)	389, 638, 662, 666, 683
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	6 cut(s)	157, 212, 276, 403, 697, 871
StyI	CCWWGG	1 cut(s)	508
TaaI	ACNGT	4 cut(s)	190, 502, 847, 881
TaiI	ACGT	1 cut(s)	450
TaqII	GACCGA	1 cut(s)	759
TasI	AATT	4 cut(s)	51, 80, 292, 477
TatI	WGTACW	2 cut(s)	723, 748
TfiI	GAWTC	3 cut(s)	313, 596, 702
Tru1I	TTAA	6 cut(s)	431, 441, 494, 675, 753, 837
Tru9I	TTAA	6 cut(s)	431, 441, 494, 675, 753, 837
TscAI	CASTG	2 cut(s)	505, 886
TseFI	GTSAC	3 cut(s)	448, 875, 961
TseI	GCWGC	2 cut(s)	460, 646
Tsp45I	GTSAC	3 cut(s)	448, 875, 961
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	2 cut(s)	264, 467
TspRI	CASTG	2 cut(s)	505, 886
VpaK11BI	GGWCC	1 cut(s)	557
XcmI	CCANNNNNNNNNTGG	2 cut(s)	210, 608
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	5 cut(s)	389, 638, 662, 666, 683
ZrmI	AGTACT	2 cut(s)	725, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.