RchiOBHm_Chr2g0147141

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
64810394 .. 64812326
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51679

Sequence Viewer

Length: 1134 bp
ATGGCCAGCCTTAGCTACATTGTTTATGTGTTGGTAAGCCTTTTGAACCCAATTAGCTACCTTCTTTATGGTCATGATCAATTCAACTATAAACCTGCACACGATAATGAGGTACAAAAGAAGGCCTTGTTTGTGTTTGGAGACTCGCTGTTTGATCCTGGCAACGATCAATACCTCCCTAATGTTACCGTAGAAGATTACCCAGCAACAACCTGGCCATATGGAGAAACCTTCTTTCACCATCCCAACGGAAGACTTTCAGATGGCCGTATAGTCCCGGACTTCATCGCTAATTTTGCGAACTTGCGTATGCTTCCACCCTACCTGCAACCAGATCCAAAAGATTTTACTGATGGAGCCAGCTTTGCTTCAGCTGGAGCTGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAACCTTCCATTGCAGTTAAGCTATTTTAAGAACGTGACGGAGTTGCTGCAAGAGCAACTGGGTGATGAAGAAGCCAAGAAGTTGCTGGGGAGCGCTGTGTACTTGATTAGCATGGGAGGCAATGATTATTTTACCTTCTACGCCAAATACCAAGAAAATGCCACCGAGTCCGTCCAGCAGGAATACATAGAAATTGTGATCGGCAACTTGACCACTGCGCTCCAAGGAATATACGACTTAGGGGGAAGGAAAATCGCATTTCAAAATGCCGGACCTCTTGGGTGCTTACCTCACGCAAAACAATCATACGATTCCCACCTTGTTCGTGGGTGCGTTGAAGGGCTCCAGAGTCTAGCGAGGCAGCACAACAAAGCTCTAGCTAGTGTCCTTAAAGAGCTAGAGAGCCAGCTACCGGGATTCAAATATTCAATATTTGAGTACTATGATGCACTTGGCGACCGAGTACTTAACCCCGCTAAATACGGCTTTACTGATGGGACAGATGCGTGTTGCGGTAGAGGGGCATACAGAGGTTCTGATTGCGGTGGGCTTAATGGAACAGTACCATATGAGTTATGCAGTAACCCTGGTGACAGTGTGTGGTTTGATGGTGGTCATACATCTGAAAGAGCAAACCGGCAGTTAGCTCAGCTGATATGGAGTGGAACACCAAATGTGACGGGGCCTTATAATGTCAAACAGCTTTTTGAACAAGAATGA

Protein Analysis

377

Amino Acids

41.62

Weight (kDa)

4.83

Isoelectric Point (pI)

34.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 43 - 357 3.9e-30 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1104
Acc36I ACCTGC 2 cut(s) 103, 333
AciI CCGC 3 cut(s) 888, 927, 957
AclWI GGATC 3 cut(s) 149, 329, 395
AcoI YGGCCR 3 cut(s) 3, 215, 265
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 5 cut(s) 114, 515, 854, 879, 978
AfeI AGCGCT 1 cut(s) 508
AfiI CCNNNNNNNGG 1 cut(s) 826
AgsI TTSAA 8 cut(s) 46, 85, 395, 677, 752, 835, 843, 1124
AjnI CCWGG 4 cut(s) 157, 212, 403, 1000
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 149, 329, 395
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 5 cut(s) 3, 123, 215, 265, 1097
ApeKI GCWGC 2 cut(s) 460, 775
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 2 cut(s) 509, 634
AspS9I GGNCC 2 cut(s) 686, 1097
AsuC2I CCSGG 2 cut(s) 278, 828
AsuHPI GGTGA 3 cut(s) 230, 488, 1016
AvaII GGWCC 1 cut(s) 686
BalI TGGCCA 2 cut(s) 5, 217
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 447, 787
BccI CCATC 5 cut(s) 249, 257, 347, 902, 1016
BceAI ACGGC 2 cut(s) 252, 913
BciT130I CCWGG 4 cut(s) 159, 214, 405, 1002
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 2 cut(s) 278, 828
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 5 cut(s) 389, 767, 791, 795, 812
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 2 cut(s) 103, 333
BisI GCNGC 2 cut(s) 461, 776
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 2 cut(s) 462, 777
BmcAI AGTACT 2 cut(s) 854, 879
Bme1390I CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1002
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 2 cut(s) 686, 1097
BmiI GGNNCC 3 cut(s) 358, 758, 1098
BmrFI CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1002
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 850, 907
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 3 cut(s) 396, 402, 743
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 1062
BpuMI CCSGG 2 cut(s) 278, 828
BsaJI CCNNGG 2 cut(s) 637, 1000
BsaXI ACNNNNNCTCC 4 cut(s) 369, 375, 399, 405
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 1 cut(s) 477
Bse3DI GCAATG 2 cut(s) 422, 541
BseBI CCWGG 4 cut(s) 159, 214, 405, 1002
BseDI CCNNGG 2 cut(s) 637, 1000
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMI GCAATG 2 cut(s) 422, 541
BseMII CTCAG 1 cut(s) 1076
BseNI ACTGG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 447, 787
BseYI CCCAGC 2 cut(s) 202, 499
BsgI GTGCAG 1 cut(s) 81
Bsh1285I CGRYCG 1 cut(s) 874
BshFI GGCC 5 cut(s) 5, 125, 217, 267, 1099
BsiEI CGRYCG 1 cut(s) 874
BsiSI CCGG 4 cut(s) 278, 684, 827, 1051
BslFI GGGAC 2 cut(s) 260, 925
BslI CCNNNNNNNGG 1 cut(s) 826
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 260, 925
BsnI GGCC 5 cut(s) 5, 125, 217, 267, 1099
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 6 cut(s) 76, 154, 166, 334, 400, 612
Bsp1720I GCTNAGC 1 cut(s) 1062
BspACI CCGC 3 cut(s) 888, 927, 957
BspANI GGCC 5 cut(s) 5, 125, 217, 267, 1099
BspCNI CTCAG 1 cut(s) 1075
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 358, 758, 1098
BspMI ACCTGC 2 cut(s) 103, 333
BspPI GGATC 3 cut(s) 149, 329, 395
BsrDI GCAATG 2 cut(s) 422, 541
BsrFI RCCGGY 1 cut(s) 1050
BsrI ACTGG 1 cut(s) 477
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 2 cut(s) 637, 1000
BssMI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 4 cut(s) 159, 214, 405, 1002
Bst4CI ACNGT 3 cut(s) 190, 976, 1010
BstC8I GCNNGC 3 cut(s) 7, 361, 821
BstDEI CTNAG 3 cut(s) 11, 652, 1062
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 509, 634
BstKTI GATC 6 cut(s) 79, 157, 169, 337, 403, 615
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
BstMCI CGRYCG 1 cut(s) 874
BstMWI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
BstNI CCWGG 4 cut(s) 159, 214, 405, 1002
BstSCI CCNGG 6 cut(s) 157, 212, 276, 403, 826, 1000
BstV1I GCAGC 2 cut(s) 447, 787
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 5 cut(s) 5, 125, 217, 267, 1099
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 241
BtsI GCAGTG 1 cut(s) 627
BtsIMutI CAGTG 2 cut(s) 627, 1015
BveI ACCTGC 2 cut(s) 103, 333
Cac8I GCNNGC 3 cut(s) 7, 361, 821
CciI TCATGA 1 cut(s) 73
CfoI GCGC 2 cut(s) 509, 634
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 2 cut(s) 686, 1097
Csp6I GTAC 5 cut(s) 113, 514, 853, 878, 977
CviAII CATG 2 cut(s) 74, 526
CviQI GTAC 5 cut(s) 113, 514, 853, 878, 977
DdeI CTNAG 3 cut(s) 11, 652, 1062
DpnI GATC 6 cut(s) 78, 156, 168, 336, 402, 614
DpnII GATC 6 cut(s) 76, 154, 166, 334, 400, 612
EaeI YGGCCR 3 cut(s) 3, 215, 265
Eco130I CCWWGG 1 cut(s) 637
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 686
Eco47III AGCGCT 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 354
EcoO109I RGGNCCY 1 cut(s) 1097
EcoRII CCWGG 4 cut(s) 157, 212, 403, 1000
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 2 cut(s) 77, 529
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 2 cut(s) 260, 925
FatI CATG 2 cut(s) 73, 525
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 2 cut(s) 220, 982
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 461, 776
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 2 cut(s) 461, 776
FspBI CTAG 5 cut(s) 389, 767, 791, 795, 812
GlaI GCGC 2 cut(s) 508, 633
GluI GCNGC 2 cut(s) 461, 776
GsaI CCCAGC 2 cut(s) 206, 503
GsuI CTGGAG 3 cut(s) 396, 402, 743
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 5 cut(s) 5, 125, 217, 267, 1099
HapII CCGG 4 cut(s) 278, 684, 827, 1051
HhaI GCGC 2 cut(s) 509, 634
Hin1II CATG 2 cut(s) 77, 529
Hin6I GCGC 2 cut(s) 507, 632
HinP1I GCGC 2 cut(s) 507, 632
HinfI GANTC 5 cut(s) 143, 581, 725, 763, 831
HpaII CCGG 4 cut(s) 278, 684, 827, 1051
HphI GGTGA 3 cut(s) 230, 488, 1016
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 262, 952, 1039
Hpy188III TCNNGA 2 cut(s) 74, 760
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 7 cut(s) 71, 115, 241, 428, 559, 654, 746
HpyCH4III ACNGT 3 cut(s) 190, 976, 1010
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 6 cut(s) 98, 328, 427, 463, 863, 993
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
HpyF3I CTNAG 3 cut(s) 11, 652, 1062
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 2 cut(s) 77, 529
HspAI GCGC 2 cut(s) 507, 632
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 6 cut(s) 76, 154, 166, 334, 400, 612
LmnI GCTCC 5 cut(s) 356, 377, 504, 639, 762
Lsp1109I GCAGC 2 cut(s) 447, 787
LweI GCATC 2 cut(s) 850, 907
MaeI CTAG 5 cut(s) 389, 767, 791, 795, 812
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 5 cut(s) 184, 448, 995, 1004, 1090
MalI GATC 6 cut(s) 78, 156, 168, 336, 402, 614
MboI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
MboII GAAGA 3 cut(s) 206, 264, 494
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 759
MlsI TGGCCA 2 cut(s) 5, 217
MluCI AATT 4 cut(s) 51, 80, 292, 606
MluNI TGGCCA 2 cut(s) 5, 217
MlyI GAGTC 3 cut(s) 137, 590, 772
MnlI CCTC 8 cut(s) 103, 185, 524, 699, 714, 765, 926, 938
Mox20I TGGCCA 2 cut(s) 5, 217
MroXI GAANNNNTTC 1 cut(s) 256
MscI TGGCCA 2 cut(s) 5, 217
MseI TTAA 5 cut(s) 431, 441, 804, 882, 966
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 2 cut(s) 5, 217
MspA1I CMGCKG 2 cut(s) 374, 1066
MspI CCGG 4 cut(s) 278, 684, 827, 1051
MspR9I CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1002
MvaI CCWGG 4 cut(s) 159, 214, 405, 1002
MwoI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
NciI CCSGG 2 cut(s) 278, 828
NdeI CATATG 2 cut(s) 220, 982
NdeII GATC 6 cut(s) 76, 154, 166, 334, 400, 612
NlaIII CATG 2 cut(s) 77, 529
NlaIV GGNNCC 3 cut(s) 358, 758, 1098
NmuCI GTSAC 3 cut(s) 448, 1004, 1090
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 2 cut(s) 725, 831
PfoI TCCNGGA 2 cut(s) 276, 403
PkrI GCNGC 2 cut(s) 462, 777
PleI GAGTC 3 cut(s) 137, 589, 771
PpsI GAGTC 3 cut(s) 137, 589, 771
PsiI TTATAA 1 cut(s) 1104
Psp6I CCWGG 4 cut(s) 157, 212, 403, 1000
PspFI CCCAGC 2 cut(s) 202, 499
PspGI CCWGG 4 cut(s) 157, 212, 403, 1000
PspN4I GGNNCC 3 cut(s) 358, 758, 1098
PspPI GGNCC 2 cut(s) 686, 1097
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 2 cut(s) 374, 1066
RsaI GTAC 5 cut(s) 114, 515, 854, 879, 978
RsaNI GTAC 5 cut(s) 113, 514, 853, 878, 977
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 5 cut(s) 431, 441, 804, 882, 966
SatI GCNGC 2 cut(s) 461, 776
Sau3AI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
Sau96I GGNCC 2 cut(s) 686, 1097
ScaI AGTACT 2 cut(s) 854, 879
SchI GAGTC 3 cut(s) 137, 590, 772
ScrFI CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1002
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 2 cut(s) 850, 907
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 4 cut(s) 51, 80, 292, 606
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 3 cut(s) 888, 927, 957
SspI AATATT 2 cut(s) 839, 846
SspMI CTAG 5 cut(s) 389, 767, 791, 795, 812
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 6 cut(s) 157, 212, 276, 403, 826, 1000
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 3 cut(s) 190, 976, 1010
TaiI ACGT 1 cut(s) 450
TaqII GACCGA 1 cut(s) 888
TasI AATT 4 cut(s) 51, 80, 292, 606
TatI WGTACW 3 cut(s) 513, 852, 877
TfiI GAWTC 2 cut(s) 725, 831
Tru1I TTAA 5 cut(s) 431, 441, 804, 882, 966
Tru9I TTAA 5 cut(s) 431, 441, 804, 882, 966
TscAI CASTG 2 cut(s) 634, 1015
TseFI GTSAC 3 cut(s) 448, 1004, 1090
TseI GCWGC 2 cut(s) 460, 775
Tsp45I GTSAC 3 cut(s) 448, 1004, 1090
TspDTI ATGAA 2 cut(s) 274, 495
TspGWI ACGGA 3 cut(s) 264, 467, 574
TspRI CASTG 2 cut(s) 634, 1015
VpaK11BI GGWCC 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 3 cut(s) 210, 496, 737
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 5 cut(s) 389, 767, 791, 795, 812
ZrmI AGTACT 2 cut(s) 854, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.