Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

28039361 .. 28040087

Gene Structure 727 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGAGGCAATGACTATTTTACCTTCTACGCCGAATACCAAGAAAATGCTACCGAGTCCCTCCAGCAAGAATACATAGGAATTGTGATCGGCAACCTGACCAATGTGCTCCAAGGGATATATGACTTGGGAGGAAGGAAAAGAGCATTTCAGAATGCAGGACCTATTGGGTGCTTACCTTATGCAAAACAATCATCCGACACTCAACTTGTTCTTGGGTGCGTCGAAGGGCTCCAGACTCTAGCGAGGCAGCACAATAAAGCTCTAGCTAGTGTTCTCAAAGAGCTAGAGAGCCAACTACCGGGATTCAAATATTCGATATTCGAGTACTATGATGCACTTGGTGATCGGGTGCTTAACCCCAATAAATACGGTTTTAAGGATGGAACAGATGCGTGTTGCGGTAGAGGGGCGTACAGAGGATCTGATTGTGGCGGACTAAATGGAACGGTGGCATATGAGTTATGTAGTAATCCTGGAGATAGTGTGTGGTTTGATGGGAGTCATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

171

Amino Acids

18.5

Weight (kDa)

4.83

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	1 - 137	7.9e-14	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	402, 435
AclWI	GGATC	1 cut(s)	430
AdeI	CACNNNGTG	1 cut(s)	344
AfaI	GTAC	2 cut(s)	329, 416
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	3 cut(s)	263, 269, 286
AluI	AGCT	3 cut(s)	263, 269, 286
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	430
ApeKI	GCWGC	1 cut(s)	250
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	356
AvaII	GGWCC	1 cut(s)	161
BanII	GRGCYC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	262
BccI	CCATC	2 cut(s)	377, 491
BciT130I	CCWGG	1 cut(s)	477
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	4 cut(s)	242, 266, 270, 287
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmcAI	AGTACT	1 cut(s)	329
Bme1390I	CCNGG	2 cut(s)	303, 477
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	2 cut(s)	303, 477
BmsI	GCATC	2 cut(s)	325, 382
BpmI	CTGGAG	3 cut(s)	47, 218, 498
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	112
BsaXI	ACNNNNNCTCC	3 cut(s)	471, 493, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	477
BseDI	CCNNGG	1 cut(s)	112
BseGI	GGATG	2 cut(s)	194, 388
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	16
BseXI	GCAGC	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	302
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	111, 234
Bsp143I	GATC	3 cut(s)	87, 346, 422
BspACI	CCGC	2 cut(s)	402, 435
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	430
BsrDI	GCAATG	1 cut(s)	16
BssECI	CCNNGG	1 cut(s)	112
BssMI	GATC	3 cut(s)	87, 346, 422
BssT1I	CCWWGG	1 cut(s)	112
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	2 cut(s)	374, 451
BstF5I	GGATG	2 cut(s)	194, 388
BstKTI	GATC	3 cut(s)	90, 349, 425
BstMBI	GATC	3 cut(s)	87, 346, 422
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	2 cut(s)	301, 475
BstV1I	GCAGC	1 cut(s)	262
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	194, 388
Cfr13I	GGNCC	1 cut(s)	161
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	2 cut(s)	328, 415
CviJI	RGCY	5 cut(s)	232, 263, 269, 286, 294
CviKI_1	RGCY	5 cut(s)	232, 263, 269, 286, 294
CviQI	GTAC	2 cut(s)	328, 415
DpnI	GATC	3 cut(s)	89, 348, 424
DpnII	GATC	3 cut(s)	87, 346, 422
DraIII	CACNNNGTG	1 cut(s)	344
EciI	GGCGGA	1 cut(s)	450
Eco130I	CCWWGG	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	112
EcoT38I	GRGCYC	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	112
FaiI	YATR	9 cut(s)	77, 121, 123, 183, 333, 457, 459, 466, 507
FaqI	GGGAC	1 cut(s)	43
FauNDI	CATATG	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	2 cut(s)	181, 395
FriOI	GRGCYC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	4 cut(s)	242, 266, 270, 287
GluI	GCNGC	1 cut(s)	251
GsuI	CTGGAG	3 cut(s)	47, 218, 498
HapII	CCGG	1 cut(s)	302
HgaI	GACGC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	56, 238, 306, 502
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	153, 199, 427
Hpy188III	TCNNGA	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	34, 129, 221
HpyCH4III	ACNGT	2 cut(s)	374, 451
HpyCH4V	TGCA	3 cut(s)	158, 185, 338
Kzo9I	GATC	3 cut(s)	87, 346, 422
LmnI	GCTCC	2 cut(s)	114, 237
LpnPI	CCDG	7 cut(s)	77, 110, 144, 248, 315, 462, 489
Lsp1109I	GCAGC	1 cut(s)	262
LweI	GCATC	2 cut(s)	325, 382
MaeI	CTAG	4 cut(s)	242, 266, 270, 287
MalI	GATC	3 cut(s)	89, 348, 424
MboI	GATC	3 cut(s)	87, 346, 422
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	2 cut(s)	111, 234
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	3 cut(s)	65, 232, 511
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	5 cut(s)	71, 125, 240, 401, 413
MseI	TTAA	2 cut(s)	357, 378
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	2 cut(s)	303, 477
Mva1269I	GAATGC	1 cut(s)	160
MvaI	CCWGG	1 cut(s)	477
NciI	CCSGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	3 cut(s)	87, 346, 422
NlaIV	GGNNCC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	306
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	1 cut(s)	252
PleI	GAGTC	3 cut(s)	64, 232, 510
PpsI	GAGTC	3 cut(s)	64, 232, 510
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	475
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	2 cut(s)	329, 416
RsaNI	GTAC	2 cut(s)	328, 415
SaqAI	TTAA	2 cut(s)	357, 378
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	3 cut(s)	87, 346, 422
Sau96I	GGNCC	1 cut(s)	161
ScaI	AGTACT	1 cut(s)	329
SchI	GAGTC	3 cut(s)	65, 232, 511
ScrFI	CCNGG	2 cut(s)	303, 477
SduI	GDGCHC	2 cut(s)	111, 234
SetI	ASST	7 cut(s)	26, 99, 166, 181, 265, 271, 288
SfaNI	GCATC	2 cut(s)	325, 382
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	402, 435
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	4 cut(s)	242, 266, 270, 287
StyD4I	CCNGG	2 cut(s)	301, 475
StyI	CCWWGG	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	374, 451
TaqI	TCGA	3 cut(s)	225, 317, 324
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	327
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	357, 378
Tru9I	TTAA	2 cut(s)	357, 378
TseI	GCWGC	1 cut(s)	250
VpaK11BI	GGWCC	1 cut(s)	161
XspI	CTAG	4 cut(s)	242, 266, 270, 287
ZrmI	AGTACT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.