RLG00000020122

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
61333296 .. 61340737
7442 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020122

Sequence Viewer

Length: 960 bp
ATGGTGAGTCTTAGCTACATTTTTTACGTGTTGGCTAGCCTATTCAACCCAATTAGCTTCCTTCTCTACGGTCATCATCATGAGCATCCCGATCAGTACTCCAGTAGTACTAGTATAGAACACAATCATAATAAGACACTGATGCCCTCCCTCGCAGCCTTTATCCAACCGGCAACTGGGTCCCATGCCCAAATCGATTCCATAGTAGTCACTAGAGCACCATTGTTGCGAGCACAAACCACACCCATAAGTCTTCCGACGCAGTTAAGCTATTTAAAAAATGTGGCAAAGTTGCTGGAGCTTAAGTTAGGTGATTTAGAAGCCAAACGTGTGCTGAGGACCGCTGTTTACTTGTTCAGCGTCGGAGGGGTGGATGATATGGTCTTCTACTCTACATATCCAAATGCCACCGAGTCCCTCCAATCCGAATTCATAGCAAATGTGAATGGTAACTTGACCGATGTGCTCAAAGAAATATACAACTTAGGAGGAAGGAAGATTGCATTTCAGAATGTAGGATCTCTTGGGTGCCAACCTATAAATAGACAATCATACGGTGTCACTGAAGGGTGTGTTGAAGGACTTTTGACTCTGGCAAGGCTACACAATAGAGCTCTAGCTAATGCCCTCGAAGAGCTGGAGCTAAAGCTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGCTTTTGGACCTATACCATAACCCTGCAAAACATGGGTTCACAAATGGGTCGGATGCATGTTGTGGTATAGGACCATACCGAGGAGATGATTGCGGCGGAGATAATGGAACCGAACCATTTGAATTGTGCCCAAACCCAGGTGACAATGTGTGGTGGGATGGTGGCCATTCGACTGAAAGAGCAAACCTTAAATTGGCAGAGCTAATATGGAGTGGCACGCTAAATACTACCGGGCCTTACAATGTCAAACAGTTTTTTCAACAAGTTTGA

Protein Analysis

320

Amino Acids

35.17

Weight (kDa)

5.74

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 110 - 299 7.5e-12 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 528
AciI CCGC 3 cut(s) 342, 783, 786
AclWI GGATC 1 cut(s) 526
AcoI YGGCCR 1 cut(s) 853
AcsI RAATTY 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 585
AfaI GTAC 2 cut(s) 98, 109
AfiI CCNNNNNNNGG 4 cut(s) 176, 770, 827, 883
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 2 cut(s) 27, 328
AgsI TTSAA 6 cut(s) 46, 578, 661, 669, 812, 950
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 826
Alw21I GWGCWC 4 cut(s) 220, 235, 468, 616
AlwI GGATC 1 cut(s) 526
AoxI GGCC 2 cut(s) 853, 923
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 428
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 5 cut(s) 180, 339, 697, 761, 923
AsuC2I CCSGG 1 cut(s) 922
AsuHPI GGTGA 3 cut(s) 16, 323, 842
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 4 cut(s) 180, 339, 697, 761
BaeGI GKGCMC 1 cut(s) 821
BalI TGGCCA 1 cut(s) 855
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 1 cut(s) 616
BbsI GAAGAC 2 cut(s) 245, 376
Bbv12I GWGCWC 4 cut(s) 220, 235, 468, 616
BbvCI CCTCAGC 1 cut(s) 335
BbvI GCAGC 1 cut(s) 167
BccI CCATC 1 cut(s) 842
BciT130I CCWGG 1 cut(s) 828
BcnI CCSGG 1 cut(s) 922
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 4 cut(s) 36, 111, 213, 617
BfrI CTTAAG 1 cut(s) 302
BisI GCNGC 2 cut(s) 156, 784
BlsI GCNGC 2 cut(s) 157, 785
BmcAI AGTACT 2 cut(s) 98, 109
Bme1390I CCNGG 2 cut(s) 828, 922
Bme18I GGWCC 4 cut(s) 180, 339, 697, 761
BmgT120I GGNCC 5 cut(s) 180, 339, 697, 761, 923
BmiI GGNNCC 4 cut(s) 181, 182, 530, 799
BmrFI CCNGG 2 cut(s) 828, 922
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 4 cut(s) 94, 132, 676, 733
BmtI GCTAGC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 186
BpiI GAAGAC 2 cut(s) 245, 376
BpmI CTGGAG 3 cut(s) 85, 317, 659
Bpu10I CCTNAGC 1 cut(s) 335
BpuMI CCSGG 1 cut(s) 922
Bsa29I ATCGAT 1 cut(s) 195
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 769, 826
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 4 cut(s) 176, 770, 827, 883
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 2 cut(s) 102, 181
BseBI CCWGG 1 cut(s) 828
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 769, 826
BseGI GGATG 4 cut(s) 85, 379, 748, 853
BseLI CCNNNNNNNGG 4 cut(s) 176, 770, 827, 883
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 2 cut(s) 102, 181
BseRI GAGGAG 1 cut(s) 786
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 1 cut(s) 167
BshFI GGCC 2 cut(s) 855, 925
BshNI GGYRCC 1 cut(s) 528
BshVI ATCGAT 1 cut(s) 195
BsiHKAI GWGCWC 4 cut(s) 220, 235, 468, 616
BsiSI CCGG 2 cut(s) 170, 921
BslFI GGGAC 2 cut(s) 166, 400
BslI CCNNNNNNNGG 4 cut(s) 176, 770, 827, 883
BsmFI GGGAC 2 cut(s) 166, 400
BsnI GGCC 2 cut(s) 855, 925
Bsp1286I GDGCHC 5 cut(s) 220, 235, 468, 616, 821
Bsp143I GATC 2 cut(s) 91, 518
BspACI CCGC 3 cut(s) 342, 783, 786
BspANI GGCC 2 cut(s) 855, 925
BspCNI CTCAG 1 cut(s) 327
BspDI ATCGAT 1 cut(s) 195
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 181, 182, 530, 799
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 1 cut(s) 526
BspQI GCTCTTC 1 cut(s) 627
BspT107I GGYRCC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 2 cut(s) 102, 181
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 2 cut(s) 769, 826
BssMI GATC 2 cut(s) 91, 518
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 71, 557, 942
Bst6I CTCTTC 1 cut(s) 627
BstAFI CTTAAG 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 3 cut(s) 37, 231, 908
BstDEI CTNAG 3 cut(s) 11, 335, 484
BstF5I GGATG 4 cut(s) 85, 379, 748, 853
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 2 cut(s) 94, 521
BstMBI GATC 2 cut(s) 91, 518
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 750
BstSCI CCNGG 2 cut(s) 826, 920
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 1 cut(s) 167
BstV2I GAAGAC 2 cut(s) 245, 376
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 2 cut(s) 855, 925
BsuTUI ATCGAT 1 cut(s) 195
BtsCI GGATG 4 cut(s) 85, 379, 748, 853
BtsIMutI CAGTG 2 cut(s) 137, 561
Cac8I GCNNGC 3 cut(s) 37, 231, 908
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 5 cut(s) 180, 339, 697, 761, 923
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 268, 349
Csp6I GTAC 2 cut(s) 97, 108
CviAII CATG 4 cut(s) 80, 185, 722, 747
CviQI GTAC 2 cut(s) 97, 108
DdeI CTNAG 3 cut(s) 11, 335, 484
DpnI GATC 2 cut(s) 93, 520
DpnII GATC 2 cut(s) 91, 518
DraI TTTAAA 1 cut(s) 276
EaeI YGGCCR 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 801
Ecl136II GAGCTC 1 cut(s) 614
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 4 cut(s) 180, 339, 697, 761
Eco53kI GAGCTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 585
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 826
EcoT22I ATGCAT 1 cut(s) 748
EcoT38I GRGCYC 1 cut(s) 616
FaeI CATG 4 cut(s) 83, 188, 725, 750
FaqI GGGAC 2 cut(s) 166, 400
FatI CATG 4 cut(s) 79, 184, 721, 746
Fnu4HI GCNGC 2 cut(s) 156, 784
FokI GGATG 4 cut(s) 72, 386, 755, 860
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 2 cut(s) 156, 784
FspBI CTAG 4 cut(s) 36, 111, 213, 617
GlaI GCGC 1 cut(s) 690
GluI GCNGC 2 cut(s) 156, 784
GsuI CTGGAG 3 cut(s) 85, 317, 659
HaeIII GGCC 2 cut(s) 855, 925
HapII CCGG 2 cut(s) 170, 921
HgaI GACGC 2 cut(s) 268, 349
HhaI GCGC 1 cut(s) 691
Hin1II CATG 4 cut(s) 83, 188, 725, 750
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HinfI GANTC 5 cut(s) 7, 197, 413, 589, 657
HpaII CCGG 2 cut(s) 170, 921
HphI GGTGA 3 cut(s) 16, 323, 842
Hpy166II GTNNAC 2 cut(s) 349, 729
Hpy188I TCNGA 5 cut(s) 258, 365, 427, 510, 742
Hpy188III TCNNGA 3 cut(s) 80, 89, 654
Hpy8I GTNNAC 2 cut(s) 349, 729
Hpy99I CGWCG 2 cut(s) 262, 365
HpyAV CCTTC 4 cut(s) 71, 486, 560, 572
HpyCH4III ACNGT 3 cut(s) 71, 557, 942
HpyCH4IV ACGT 2 cut(s) 27, 328
HpyCH4V TGCA 3 cut(s) 503, 716, 746
HpyF3I CTNAG 3 cut(s) 11, 335, 484
HpySE526I ACGT 2 cut(s) 27, 328
Hsp92II CATG 4 cut(s) 83, 188, 725, 750
HspAI GCGC 1 cut(s) 689
KflI GGGWCCC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 91, 518
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 2 cut(s) 298, 640
Lsp1109I GCAGC 1 cut(s) 167
LweI GCATC 4 cut(s) 94, 132, 676, 733
MaeI CTAG 4 cut(s) 36, 111, 213, 617
MaeII ACGT 2 cut(s) 27, 328
MaeIII GTNAC 4 cut(s) 208, 449, 559, 830
MalI GATC 2 cut(s) 93, 520
MboI GATC 2 cut(s) 91, 518
MboII GAAGA 4 cut(s) 245, 376, 508, 644
MflI RGATCY 1 cut(s) 518
MhlI GDGCHC 5 cut(s) 220, 235, 468, 616, 821
MlsI TGGCCA 1 cut(s) 855
MluCI AATT 4 cut(s) 51, 428, 812, 881
MluNI TGGCCA 1 cut(s) 855
MlyI GAGTC 3 cut(s) 16, 422, 583
MmeI TCCRAC 4 cut(s) 190, 281, 343, 720
MnlI CCTC 8 cut(s) 157, 161, 330, 359, 428, 482, 638, 764
Mox20I TGGCCA 1 cut(s) 855
Mph1103I ATGCAT 1 cut(s) 748
MscI TGGCCA 1 cut(s) 855
MseI TTAA 5 cut(s) 266, 275, 303, 675, 879
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 1 cut(s) 855
MspA1I CMGCKG 1 cut(s) 344
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 2 cut(s) 170, 921
MspR9I CCNGG 2 cut(s) 828, 922
MvaI CCWGG 1 cut(s) 828
NciI CCSGG 1 cut(s) 922
NdeII GATC 2 cut(s) 91, 518
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 83, 188, 725, 750
NlaIV GGNNCC 4 cut(s) 181, 182, 530, 799
NmuCI GTSAC 3 cut(s) 208, 559, 830
NsiI ATGCAT 1 cut(s) 748
NspI RCATGY 1 cut(s) 750
PagI TCATGA 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 627
PfeI GAWTC 2 cut(s) 197, 657
PkrI GCNGC 2 cut(s) 157, 785
PleI GAGTC 3 cut(s) 15, 421, 583
PpsI GAGTC 3 cut(s) 15, 421, 583
Ppu21I YACGTR 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 826
PspGI CCWGG 1 cut(s) 826
PspN4I GGNNCC 4 cut(s) 181, 182, 530, 799
PspPI GGNCC 5 cut(s) 180, 339, 697, 761, 923
PspPPI RGGWCCY 1 cut(s) 180
PsuI RGATCY 1 cut(s) 518
RsaI GTAC 2 cut(s) 98, 109
RsaNI GTAC 2 cut(s) 97, 108
RseI CAYNNNNRTG 1 cut(s) 78
SacI GAGCTC 1 cut(s) 616
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 5 cut(s) 266, 275, 303, 675, 879
SatI GCNGC 2 cut(s) 156, 784
Sau3AI GATC 2 cut(s) 91, 518
Sau96I GGNCC 5 cut(s) 180, 339, 697, 761, 923
ScaI AGTACT 2 cut(s) 98, 109
SchI GAGTC 3 cut(s) 16, 422, 583
ScrFI CCNGG 2 cut(s) 828, 922
SduI GDGCHC 5 cut(s) 220, 235, 468, 616, 821
SfaNI GCATC 4 cut(s) 94, 132, 676, 733
SinI GGWCC 4 cut(s) 180, 339, 697, 761
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 4 cut(s) 51, 428, 812, 881
SsiI CCGC 3 cut(s) 342, 783, 786
SspI AATATT 2 cut(s) 665, 672
SspMI CTAG 4 cut(s) 36, 111, 213, 617
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 2 cut(s) 826, 920
TaaI ACNGT 3 cut(s) 71, 557, 942
TaiI ACGT 2 cut(s) 30, 331
TaqI TCGA 3 cut(s) 195, 630, 860
TaqII GACCGA 1 cut(s) 473
TasI AATT 4 cut(s) 51, 428, 812, 881
TatI WGTACW 2 cut(s) 96, 107
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 2 cut(s) 197, 657
Tru1I TTAA 5 cut(s) 266, 275, 303, 675, 879
Tru9I TTAA 5 cut(s) 266, 275, 303, 675, 879
TscAI CASTG 2 cut(s) 144, 568
TseFI GTSAC 3 cut(s) 208, 559, 830
TseI GCWGC 1 cut(s) 155
Tsp45I GTSAC 3 cut(s) 208, 559, 830
TspDTI ATGAA 1 cut(s) 421
TspRI CASTG 2 cut(s) 144, 568
Vha464I CTTAAG 1 cut(s) 302
VpaK11BI GGWCC 4 cut(s) 180, 339, 697, 761
XapI RAATTY 1 cut(s) 428
XceI RCATGY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 173
XspI CTAG 4 cut(s) 36, 111, 213, 617
ZrmI AGTACT 2 cut(s) 98, 109
Zsp2I ATGCAT 1 cut(s) 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.