Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

50877758 .. 50878603

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0398500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCGTCTGACTCGTTGATGACGATGATGATGCCACCTCGGCGGCAGCAGCATCAAACACAAGCGCTTCCGTCACCGTCGCCGGTGTCGTCTACAGTGCCGGAGAGTGGGACTAACTTTGAGGCCTTGAACTCCAGCGCCAATACTACTCCTACAATTTCACAATCTGATTATTGCGTTTGTGCGATTGATTCTCTTCTTTTCGTATTCAATTTTACCTTTCCTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTCTTCCTTACCGTGCTTCTGCCCGATGCCAAGGACGCCAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCCGCTAGTGCCGGCGCCGGGAATAACCACTATGAGCTGAAACTCGACCTTTTCGATAAGGTTGATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATAGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTATTGAAAGGAGATGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTTGACGAAGACGAGGATCCTTGTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

190

Amino Acids

21.34

Weight (kDa)

5.0

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	78 - 154	2.1e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	3 cut(s)	43, 342, 512
AclWI	GGATC	2 cut(s)	554, 567
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	300, 354
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	3 cut(s)	107, 256, 357
AgsI	TTSAA	3 cut(s)	130, 211, 493
AluBI	AGCT	3 cut(s)	313, 376, 487
AluI	AGCT	3 cut(s)	313, 376, 487
AlwI	GGATC	2 cut(s)	554, 567
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	2 cut(s)	123, 246
ApaI	GGGCCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	46, 49
AspLEI	GCGC	3 cut(s)	67, 140, 356
AspS9I	GGNCC	2 cut(s)	246, 247
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	2 cut(s)	66, 250
AxyI	CCTNAGG	1 cut(s)	234
BaeGI	GKGCMC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	559
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	3 cut(s)	259, 512, 558
BbvI	GCAGC	2 cut(s)	58, 61
BccI	CCATC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BcnI	CCSGG	1 cut(s)	358
BfaI	CTAG	1 cut(s)	345
BfmI	CTRYAG	1 cut(s)	93
BfoI	RGCGCY	3 cut(s)	68, 141, 357
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	44, 47, 50
BlsI	GCNGC	3 cut(s)	45, 48, 51
Bme1390I	CCNGG	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	246, 247
BmiI	GGNNCC	3 cut(s)	248, 355, 561
BmrFI	CCNGG	1 cut(s)	358
BmsI	GCATC	3 cut(s)	21, 61, 280
BpiI	GAAGAC	3 cut(s)	259, 512, 558
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	358
BsaHI	GRCGYC	2 cut(s)	300, 354
BsaJI	CCNNGG	3 cut(s)	38, 294, 303
Bsc4I	CCNNNNNNNGG	3 cut(s)	107, 256, 357
Bse118I	RCCGGY	2 cut(s)	82, 350
Bse21I	CCTNAGG	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	38, 294, 303
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	107, 256, 357
BseMII	CTCAG	1 cut(s)	225
BseRI	GAGGAG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	2 cut(s)	58, 61
BshFI	GGCC	2 cut(s)	125, 248
BshNI	GGYRCC	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	83, 101, 351, 357
BslFI	GGGAC	2 cut(s)	124, 548
BslI	CCNNNNNNNGG	3 cut(s)	107, 256, 357
BsmFI	GGGAC	2 cut(s)	124, 548
BsnI	GGCC	2 cut(s)	125, 248
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	559
BspACI	CCGC	3 cut(s)	43, 342, 512
BspANI	GGCC	2 cut(s)	125, 248
BspCNI	CTCAG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	248, 355, 561
BspPI	GGATC	2 cut(s)	554, 567
BspT107I	GGYRCC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	82, 350
BssAI	RCCGGY	2 cut(s)	82, 350
BssECI	CCNNGG	3 cut(s)	38, 294, 303
BssMI	GATC	1 cut(s)	559
BssNI	GRCGYC	2 cut(s)	300, 354
BssT1I	CCWWGG	2 cut(s)	294, 303
Bst4CI	ACNGT	3 cut(s)	78, 97, 277
Bst6I	CTCTTC	1 cut(s)	201
BstACI	GRCGYC	2 cut(s)	300, 354
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	229
BstH2I	RGCGCY	3 cut(s)	68, 141, 357
BstHHI	GCGC	3 cut(s)	67, 140, 356
BstKTI	GATC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	559
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 49, 299
BstSCI	CCNGG	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	58, 61
BstV2I	GAAGAC	3 cut(s)	259, 512, 558
BstX2I	RGATCY	1 cut(s)	559
BstYI	RGATCY	1 cut(s)	559
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	125, 248
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	352
CfoI	GCGC	3 cut(s)	67, 140, 356
Cfr10I	RCCGGY	2 cut(s)	82, 350
Cfr13I	GGNCC	2 cut(s)	246, 247
CseI	GACGC	1 cut(s)	308
CviJI	RGCY	6 cut(s)	125, 248, 313, 319, 376, 487
CviKI_1	RGCY	6 cut(s)	125, 248, 313, 319, 376, 487
DdeI	CTNAG	1 cut(s)	234
DinI	GGCGCC	1 cut(s)	355
DpnI	GATC	1 cut(s)	561
DpnII	GATC	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	2 cut(s)	294, 303
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	250
Eco47III	AGCGCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	1 cut(s)	234
EcoT14I	CCWWGG	2 cut(s)	294, 303
EcoT38I	GRGCYC	1 cut(s)	250
EgeI	GGCGCC	1 cut(s)	355
EheI	GGCGCC	1 cut(s)	355
ErhI	CCWWGG	2 cut(s)	294, 303
FaiI	YATR	4 cut(s)	372, 443, 519, 569
FaqI	GGGAC	2 cut(s)	124, 548
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	3 cut(s)	44, 47, 50
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	3 cut(s)	44, 47, 50
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	3 cut(s)	66, 139, 355
GluI	GCNGC	3 cut(s)	44, 47, 50
GsuI	CTGGAG	1 cut(s)	118
HaeII	RGCGCY	3 cut(s)	68, 141, 357
HaeIII	GGCC	2 cut(s)	125, 248
HapII	CCGG	4 cut(s)	83, 101, 351, 357
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	3 cut(s)	67, 140, 356
Hin1I	GRCGYC	2 cut(s)	300, 354
Hin6I	GCGC	3 cut(s)	65, 138, 354
HinP1I	GCGC	3 cut(s)	65, 138, 354
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	2 cut(s)	11, 191
HpaII	CCGG	4 cut(s)	83, 101, 351, 357
HphI	GGTGA	2 cut(s)	66, 250
Hpy166II	GTNNAC	2 cut(s)	93, 547
Hpy188I	TCNGA	2 cut(s)	10, 169
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	2 cut(s)	93, 547
Hpy99I	CGWCG	1 cut(s)	82
HpyAV	CCTTC	2 cut(s)	317, 454
HpyCH4III	ACNGT	3 cut(s)	78, 97, 277
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 49, 299
HpyF3I	CTNAG	1 cut(s)	234
Hsp92I	GRCGYC	2 cut(s)	300, 354
HspAI	GCGC	3 cut(s)	65, 138, 354
KasI	GGCGCC	1 cut(s)	353
KroI	GCCGGC	1 cut(s)	350
KroNI	GCCGGC	1 cut(s)	352
Kzo9I	GATC	1 cut(s)	559
LpnPI	CCDG	8 cut(s)	96, 114, 148, 246, 263, 333, 364, 370
Lsp1109I	GCAGC	2 cut(s)	58, 61
LweI	GCATC	3 cut(s)	21, 61, 280
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	1 cut(s)	561
MboI	GATC	1 cut(s)	559
MboII	GAAGA	5 cut(s)	188, 259, 328, 517, 563
MflI	RGATCY	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	2 cut(s)	156, 211
Mly113I	GGCGCC	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	5
MnlI	CCTC	9 cut(s)	48, 115, 229, 234, 246, 250, 403, 429, 550
MroNI	GCCGGC	1 cut(s)	350
MseI	TTAA	1 cut(s)	309
MspI	CCGG	4 cut(s)	83, 101, 351, 357
MspR9I	CCNGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	40, 49, 299
NaeI	GCCGGC	1 cut(s)	352
NarI	GGCGCC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	1 cut(s)	559
NgoMIV	GCCGGC	1 cut(s)	350
NlaIV	GGNNCC	3 cut(s)	248, 355, 561
NmeAIII	GCCGAG	1 cut(s)	19
NmuCI	GTSAC	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	4 cut(s)	11, 20, 86, 390
PdiI	GCCGGC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	191
PflFI	GACNNNGTC	1 cut(s)	263
PkrI	GCNGC	3 cut(s)	45, 48, 51
PleI	GAGTC	1 cut(s)	5
PluTI	GGCGCC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	5
PspN4I	GGNNCC	3 cut(s)	248, 355, 561
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	2 cut(s)	246, 247
PsuI	RGATCY	1 cut(s)	559
PsyI	GACNNNGTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	309
SatI	GCNGC	3 cut(s)	44, 47, 50
Sau3AI	GATC	1 cut(s)	559
Sau96I	GGNCC	2 cut(s)	246, 247
SchI	GAGTC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	358
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	3 cut(s)	21, 61, 280
SfcI	CTRYAG	1 cut(s)	93
SfoI	GGCGCC	1 cut(s)	355
SgrAI	CRCCGGYG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	156, 211
SseBI	AGGCCT	1 cut(s)	125
SsiI	CCGC	3 cut(s)	43, 342, 512
SspDI	GGCGCC	1 cut(s)	353
SspMI	CTAG	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	2 cut(s)	294, 303
TaaI	ACNGT	3 cut(s)	78, 97, 277
TaqI	TCGA	2 cut(s)	384, 393
TasI	AATT	2 cut(s)	156, 211
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	1 cut(s)	309
Tru9I	TTAA	1 cut(s)	309
TscAI	CASTG	1 cut(s)	102
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	46, 49
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	322
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	102
Tth111I	GACNNNGTC	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.