Rroxscaffold_2G00100900

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
22796444 .. 22803040
6597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00100900.1

Sequence Viewer

Length: 1140 bp
ATGGTAAGTCTTAGCTACATTGTTTACGTGTTGGCTAGCCTATTCAACCCAATTAGCTTCCTTCTTTACGGTCATCATCATGATCATCCTAATCAGTACAGTAGTACTAGTATAGAACACAATCATAATAAGGTGGCGTTGTTTGTGTTTGGGGACTCACCATTTGAGGCTGGAAACAACCAATACCTTCCTAATACTACCGTAGAAGATGATGCAGCGATAGCCTGGCCATATGGAGAAACATACTTCCACCATTCGACCGGAAGATTTTGCGATGGACGTGTTGTCCCAGATTTTATCGCTAAGTTTGGAAAACTGCCAATGCTTCCACCATATCTGCAACCTGGTCCACATGATTTTACCGATGGATCCAACTTTGCTTCAGGAGGAGCCGGAGTTCTTGAAACAACTAACCCTGGATTGTCAATAAATCTTCCGACGCAGTTCAGCTATTTAAAAAATGTGGCGAAGTCGCTGGAGCTGAAGTTAGGTGATTTAGAAGCCAAACGTGTGCTGAGGACCGCTGTTTACTTGCTCAGCATCGGAGGGGTCGATTATATTTCCTTCTACTCTACATATCCAAATGCCACCGAGTCCCTCCGATCCGAATTCATAGCAAATGTGATTGGTAACTTGACCGTTGTGCTCAAAGAAATATACAACTTAGGAGGAAGGAAGATTGCATTTCAGAATGTAGGATCTCTTGGGTGCCAACCTATAAATAGACAAACATACGGTGTCACCGAAGGGTGTGTTGAAGGACTTTCGACTTTGGCGAGGCTACACAATACAGCTCTAGCTAATGTCCTTGAAGAGCTAGAGCTAGAGCTATCGGGATTCAAATATTCAATATTTAACTACTATGATGCGCTTTTGGAGCTATACCATAACCCTGCAAAACATGGGTTCACAAATGGATCGGATGCATGTTGTGGTATAGGACCATACCGAGGAGATGATTGCGGCGGAGATAATGGAACCGAACCATACGAATTGTGCCCAAACCCAGGTGACTATGTGTGGTGGGATGGTGGCCATTCGACTGAAAGAGGAAACCTTAAATTGGCAGAGCAAATATGGAATGGCACGCTAAATACTACCGGGCCTTACAATGTCAAACAGTTTTTTCAGCAAGTTTGA

Protein Analysis

379

Amino Acids

41.79

Weight (kDa)

5.24

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 359 1.3e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 708
AciI CCGC 3 cut(s) 522, 963, 966
AclWI GGATC 5 cut(s) 363, 376, 597, 706, 925
AcoI YGGCCR 2 cut(s) 227, 1033
AcsI RAATTY 1 cut(s) 608
AcuI CTGAAG 2 cut(s) 366, 503
AfaI GTAC 2 cut(s) 98, 106
AfiI CCNNNNNNNGG 3 cut(s) 950, 1007, 1063
AflIII ACRYGT 3 cut(s) 27, 280, 508
AgsI TTSAA 6 cut(s) 46, 404, 758, 812, 841, 849
AhdI GACNNNNNGTC 1 cut(s) 284
AhlI ACTAGT 1 cut(s) 107
AjiI CACGTC 1 cut(s) 281
AjnI CCWGG 4 cut(s) 224, 343, 415, 1006
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
Alw21I GWGCWC 1 cut(s) 648
AlwI GGATC 5 cut(s) 363, 376, 597, 706, 925
AoxI GGCC 3 cut(s) 227, 1033, 1103
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 608
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 1 cut(s) 871
AspS9I GGNCC 4 cut(s) 347, 519, 941, 1103
AsuC2I CCSGG 1 cut(s) 1102
AsuHPI GGTGA 4 cut(s) 150, 503, 733, 1022
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 3 cut(s) 347, 519, 941
BaeGI GKGCMC 1 cut(s) 1001
BalI TGGCCA 2 cut(s) 229, 1035
BamHI GGATCC 1 cut(s) 368
BanI GGYRCC 1 cut(s) 708
Bbv12I GWGCWC 1 cut(s) 648
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 1 cut(s) 227
BccI CCATC 3 cut(s) 269, 359, 1022
BciT130I CCWGG 4 cut(s) 226, 345, 417, 1008
BclI TGATCA 1 cut(s) 82
BcnI CCSGG 1 cut(s) 1102
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 5 cut(s) 36, 108, 797, 818, 824
BisI GCNGC 2 cut(s) 216, 964
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 2 cut(s) 217, 965
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 5 cut(s) 226, 345, 417, 1008, 1102
Bme18I GGWCC 3 cut(s) 347, 519, 941
BmeRI GACNNNNNGTC 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 4 cut(s) 347, 519, 941, 1103
BmiI GGNNCC 4 cut(s) 370, 391, 710, 979
BmrFI CCNGG 5 cut(s) 226, 345, 417, 1008, 1102
BmsI GCATC 4 cut(s) 202, 549, 856, 913
BmtI GCTAGC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 515
Bpu1102I GCTNAGC 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 1102
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 415, 949, 1006
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 4 cut(s) 381, 411, 470, 500
Bsc4I CCNNNNNNNGG 3 cut(s) 950, 1007, 1063
BseBI CCWGG 4 cut(s) 226, 345, 417, 1008
BseDI CCNNGG 3 cut(s) 415, 949, 1006
BseGI GGATG 3 cut(s) 85, 928, 1033
BseLI CCNNNNNNNGG 3 cut(s) 950, 1007, 1063
BseMII CTCAG 2 cut(s) 506, 550
BseRI GAGGAG 2 cut(s) 402, 966
BseSI GKGCMC 1 cut(s) 1001
BseXI GCAGC 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 3 cut(s) 229, 1035, 1105
BshNI GGYRCC 1 cut(s) 708
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 648
BsiSI CCGG 3 cut(s) 261, 393, 1101
BslFI GGGAC 3 cut(s) 167, 272, 580
BslI CCNNNNNNNGG 3 cut(s) 950, 1007, 1063
BsmFI GGGAC 3 cut(s) 167, 272, 580
BsnI GGCC 3 cut(s) 229, 1035, 1105
Bsp1286I GDGCHC 2 cut(s) 648, 1001
Bsp143I GATC 5 cut(s) 82, 368, 602, 698, 917
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 3 cut(s) 522, 963, 966
BspANI GGCC 3 cut(s) 229, 1035, 1105
BspCNI CTCAG 2 cut(s) 507, 549
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 4 cut(s) 370, 391, 710, 979
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 5 cut(s) 363, 376, 597, 706, 925
BspQI GCTCTTC 1 cut(s) 807
BspT107I GGYRCC 1 cut(s) 708
BssECI CCNNGG 3 cut(s) 415, 949, 1006
BssMI GATC 5 cut(s) 82, 368, 602, 698, 917
Bst2UI CCWGG 4 cut(s) 226, 345, 417, 1008
Bst4CI ACNGT 6 cut(s) 71, 101, 202, 640, 737, 1122
Bst6I CTCTTC 1 cut(s) 807
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 37, 1088
BstDEI CTNAG 5 cut(s) 11, 303, 515, 536, 664
BstF5I GGATG 3 cut(s) 85, 928, 1033
BstHHI GCGC 1 cut(s) 871
BstKTI GATC 5 cut(s) 85, 371, 605, 701, 920
BstMBI GATC 5 cut(s) 82, 368, 602, 698, 917
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 2 cut(s) 221, 877
BstNI CCWGG 4 cut(s) 226, 345, 417, 1008
BstNSI RCATGY 1 cut(s) 930
BstSCI CCNGG 5 cut(s) 224, 343, 415, 1006, 1100
BstSLI GKGCMC 1 cut(s) 1001
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 368, 698
BstYI RGATCY 2 cut(s) 368, 698
BsuRI GGCC 3 cut(s) 229, 1035, 1105
BtgZI GCGATG 1 cut(s) 288
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 85, 928, 1033
Cac8I GCNNGC 2 cut(s) 37, 1088
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 871
Cfr13I GGNCC 4 cut(s) 347, 519, 941, 1103
CseI GACGC 1 cut(s) 448
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 2 cut(s) 97, 105
CviAII CATG 4 cut(s) 80, 353, 902, 927
CviQI GTAC 2 cut(s) 97, 105
DdeI CTNAG 5 cut(s) 11, 303, 515, 536, 664
DpnI GATC 5 cut(s) 84, 370, 604, 700, 919
DpnII GATC 5 cut(s) 82, 368, 602, 698, 917
DraI TTTAAA 1 cut(s) 456
DriI GACNNNNNGTC 1 cut(s) 284
EaeI YGGCCR 2 cut(s) 227, 1033
Eam1104I CTCTTC 1 cut(s) 807
Eam1105I GACNNNNNGTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 807
EciI GGCGGA 1 cut(s) 981
Eco47I GGWCC 3 cut(s) 347, 519, 941
Eco57I CTGAAG 2 cut(s) 366, 503
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 4 cut(s) 224, 343, 415, 1006
EcoT22I ATGCAT 1 cut(s) 928
FaeI CATG 4 cut(s) 83, 356, 905, 930
FaqI GGGAC 3 cut(s) 167, 272, 580
FatI CATG 4 cut(s) 79, 352, 901, 926
FauNDI CATATG 1 cut(s) 232
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 216, 964
FokI GGATG 3 cut(s) 72, 935, 1040
Fsp4HI GCNGC 2 cut(s) 216, 964
FspBI CTAG 5 cut(s) 36, 108, 797, 818, 824
GlaI GCGC 1 cut(s) 870
GluI GCNGC 2 cut(s) 216, 964
GsuI CTGGAG 1 cut(s) 497
HaeIII GGCC 3 cut(s) 229, 1035, 1105
HapII CCGG 3 cut(s) 261, 393, 1101
HgaI GACGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 871
Hin1II CATG 4 cut(s) 83, 356, 905, 930
Hin6I GCGC 1 cut(s) 869
HinP1I GCGC 1 cut(s) 869
HinfI GANTC 3 cut(s) 155, 593, 837
HpaII CCGG 3 cut(s) 261, 393, 1101
HphI GGTGA 4 cut(s) 150, 503, 733, 1022
Hpy166II GTNNAC 4 cut(s) 25, 350, 529, 909
Hpy188I TCNGA 6 cut(s) 438, 545, 602, 607, 690, 922
Hpy188III TCNNGA 4 cut(s) 80, 384, 401, 834
Hpy8I GTNNAC 4 cut(s) 25, 350, 529, 909
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 6 cut(s) 71, 197, 574, 666, 740, 752
HpyCH4III ACNGT 6 cut(s) 71, 101, 202, 640, 737, 1122
HpyCH4IV ACGT 3 cut(s) 27, 280, 508
HpyCH4V TGCA 5 cut(s) 215, 340, 683, 896, 926
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 877
HpyF3I CTNAG 5 cut(s) 11, 303, 515, 536, 664
HpySE526I ACGT 3 cut(s) 27, 280, 508
Hsp92II CATG 4 cut(s) 83, 356, 905, 930
HspAI GCGC 1 cut(s) 869
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 5 cut(s) 82, 368, 602, 698, 917
LguI GCTCTTC 1 cut(s) 807
LmnI GCTCC 3 cut(s) 389, 478, 877
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 4 cut(s) 202, 549, 856, 913
MabI ACCWGGT 1 cut(s) 343
MaeI CTAG 5 cut(s) 36, 108, 797, 818, 824
MaeII ACGT 3 cut(s) 27, 280, 508
MaeIII GTNAC 3 cut(s) 629, 739, 1010
MalI GATC 5 cut(s) 84, 370, 604, 700, 919
MboI GATC 5 cut(s) 82, 368, 602, 698, 917
MboII GAAGA 5 cut(s) 218, 276, 425, 688, 824
MflI RGATCY 2 cut(s) 368, 698
MhlI GDGCHC 2 cut(s) 648, 1001
MlsI TGGCCA 2 cut(s) 229, 1035
MluCI AATT 4 cut(s) 51, 608, 992, 1061
MluNI TGGCCA 2 cut(s) 229, 1035
MlyI GAGTC 2 cut(s) 149, 602
MmeI TCCRAC 2 cut(s) 396, 461
MnlI CCTC 9 cut(s) 160, 380, 510, 539, 608, 662, 771, 944, 1043
Mox20I TGGCCA 2 cut(s) 229, 1035
Mph1103I ATGCAT 1 cut(s) 928
MscI TGGCCA 2 cut(s) 229, 1035
MseI TTAA 3 cut(s) 455, 855, 1059
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 2 cut(s) 229, 1035
MspA1I CMGCKG 1 cut(s) 524
MspI CCGG 3 cut(s) 261, 393, 1101
MspR9I CCNGG 5 cut(s) 226, 345, 417, 1008, 1102
MvaI CCWGG 4 cut(s) 226, 345, 417, 1008
MwoI GCNNNNNNNGC 2 cut(s) 221, 877
NciI CCSGG 1 cut(s) 1102
NdeI CATATG 1 cut(s) 232
NdeII GATC 5 cut(s) 82, 368, 602, 698, 917
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 83, 356, 905, 930
NlaIV GGNNCC 4 cut(s) 370, 391, 710, 979
NmuCI GTSAC 2 cut(s) 739, 1010
NsiI ATGCAT 1 cut(s) 928
NspI RCATGY 1 cut(s) 930
PagI TCATGA 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 807
PcsI WCGNNNNNNNCGW 3 cut(s) 549, 741, 773
PfeI GAWTC 1 cut(s) 837
PkrI GCNGC 2 cut(s) 217, 965
PleI GAGTC 2 cut(s) 149, 601
PpsI GAGTC 2 cut(s) 149, 601
Ppu21I YACGTR 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 224, 343, 415, 1006
PspGI CCWGG 4 cut(s) 224, 343, 415, 1006
PspN4I GGNNCC 4 cut(s) 370, 391, 710, 979
PspPI GGNCC 4 cut(s) 347, 519, 941, 1103
PsuI RGATCY 2 cut(s) 368, 698
RsaI GTAC 2 cut(s) 98, 106
RsaNI GTAC 2 cut(s) 97, 105
RseI CAYNNNNRTG 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 807
SaqAI TTAA 3 cut(s) 455, 855, 1059
SatI GCNGC 2 cut(s) 216, 964
Sau3AI GATC 5 cut(s) 82, 368, 602, 698, 917
Sau96I GGNCC 4 cut(s) 347, 519, 941, 1103
ScaI AGTACT 1 cut(s) 106
SchI GAGTC 2 cut(s) 149, 602
ScrFI CCNGG 5 cut(s) 226, 345, 417, 1008, 1102
SduI GDGCHC 2 cut(s) 648, 1001
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 4 cut(s) 202, 549, 856, 913
SinI GGWCC 3 cut(s) 347, 519, 941
SmiMI CAYNNNNRTG 1 cut(s) 78
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 4 cut(s) 51, 608, 992, 1061
SsiI CCGC 3 cut(s) 522, 963, 966
SspI AATATT 2 cut(s) 845, 852
SspMI CTAG 5 cut(s) 36, 108, 797, 818, 824
StyD4I CCNGG 5 cut(s) 224, 343, 415, 1006, 1100
TaaI ACNGT 6 cut(s) 71, 101, 202, 640, 737, 1122
TaiI ACGT 3 cut(s) 30, 283, 511
TaqI TCGA 4 cut(s) 257, 552, 767, 1040
TasI AATT 4 cut(s) 51, 608, 992, 1061
TatI WGTACW 2 cut(s) 96, 104
TauI GCSGC 1 cut(s) 966
TfiI GAWTC 1 cut(s) 837
Tru1I TTAA 3 cut(s) 455, 855, 1059
Tru9I TTAA 3 cut(s) 455, 855, 1059
TseFI GTSAC 2 cut(s) 739, 1010
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 739, 1010
TspDTI ATGAA 1 cut(s) 601
VpaK11BI GGWCC 3 cut(s) 347, 519, 941
XapI RAATTY 1 cut(s) 608
XceI RCATGY 1 cut(s) 930
XspI CTAG 5 cut(s) 36, 108, 797, 818, 824
ZrmI AGTACT 1 cut(s) 106
Zsp2I ATGCAT 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.