Rw2G037280

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
61410121 .. 61421319
11199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037280.1

Sequence Viewer

Length: 1134 bp
ATGGCAAGTCTTGGCTGCATTTTCTATGTGTTTGTAAGCCTTTTCAACCTAATTAGCTACCTTCTGTCCGGTCACGGTCTGTTCAATTATAGGCCGGCACATAATCATGAGCTAAAACAGAAGGCGGCGGCGTTGTTTGTGTTTGGGGACTCACTCTTTGATATTGGCAATAATCAATACCTTAATACTAGCGCACGAGAATTATCGGCAACATACTGGCCATATGGAGAAAACTTCTTCCATCATCCCACCGGGAGATTTTCCGACGGTCGTTTATTGCCCATCATTCCACCGTACCTGCAACCTGGTCCCCATAATTTTACTGACGGAACCAACTTTGCTTCAGCCGACGCCGGTATTCTTCCTGAAACCAATCCAGGAACAGTAAGTCTTCCATTGCAGCTAAGCTATTTTAAGGCCGTGAAGAAGTTGCTGCAACAACAACTTGGTGATGAAGAGGCCAAGAGTTTGCTGGGGAGAGCTGTTTACTTGATCAGCATTGGTGGCAATGATTATTTTAGCTTCTACGCCAATTACCCCTACGCCAATGAGACCATCCAGCAAGAATTTGTAGCTATTGTGATCAGCAAGTTGACCATTGTGCTCCAAGAAATATATGATTTAGGAGGAAGGAAAGTTGCATTTCAAAATGCGGGACCTATTGGTTGTCTACCTTCGGTAAAACAGGCATACAACACTAGGGCTGGATTTGGTACGCCACCCCTATACAACACTGAACTTAGTGATGGGTGTGTTGAAGAACTCGAGAGTTTGATAAGGCTACACAATACAGCTCTGGCAAATGTCCTCAAAGAGTTGGAGAGCCAGAAGCCAGGGTTCAAATACTCAGTTTTTGAGTACTATGATGCGATTGGAGATCGAATGCATAGCCCAGCAAAATATGGCTTTACTGACGGCTCAGATGCGTGTTGTGGTATTGGAGCATACTGGGGATCTGGTTGCGGTAATGAAACAAAAGGGTATGAGTTATGTAGTGACCCTGGGAATTATGTGTGGTTCGATGGTAGCCATACCACTGAAAAAGTCAACCTACAATTAGCAAAGCTGATATGGAGTGGAACACCAGATGTAACTGGGCCTTACAATGTTAAACAACTTTTTGGACATGTTTGA

Protein Analysis

377

Amino Acids

41.6

Weight (kDa)

5.57

Isoelectric Point (pI)

29.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 357 2.1e-26 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 670
AciI CCGC 4 cut(s) 125, 128, 653, 963
AclWI GGATC 1 cut(s) 961
AcoI YGGCCR 1 cut(s) 218
AcsI RAATTY 1 cut(s) 566
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 1 cut(s) 351
AfaI GTAC 3 cut(s) 296, 715, 860
AflIII ACRYGT 1 cut(s) 1126
AgsI TTSAA 5 cut(s) 46, 85, 647, 758, 841
AjnI CCWGG 4 cut(s) 304, 376, 832, 1000
AluBI AGCT 9 cut(s) 57, 112, 403, 408, 482, 522, 575, 794, 1066
AluI AGCT 9 cut(s) 57, 112, 403, 408, 482, 522, 575, 794, 1066
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 1 cut(s) 961
Ama87I CYCGRG 1 cut(s) 764
AoxI GGCC 5 cut(s) 92, 218, 417, 459, 1097
ApeKI GCWGC 3 cut(s) 15, 400, 433
ApoI RAATTY 1 cut(s) 566
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 308, 656, 1097
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 461
AvaI CYCGRG 1 cut(s) 764
AvaII GGWCC 2 cut(s) 308, 656
BalI TGGCCA 1 cut(s) 220
BauI CACGAG 1 cut(s) 195
BbsI GAAGAC 1 cut(s) 383
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 3 cut(s) 2, 412, 420
BccI CCATC 5 cut(s) 249, 290, 563, 740, 1016
BceAI ACGGC 2 cut(s) 404, 931
BciT130I CCWGG 4 cut(s) 306, 378, 834, 1002
BclI TGATCA 2 cut(s) 492, 582
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 2 cut(s) 189, 699
BfuAI ACCTGC 1 cut(s) 306
BisI GCNGC 5 cut(s) 16, 126, 129, 401, 434
BlpI GCTNAGC 1 cut(s) 404
BlsI GCNGC 5 cut(s) 17, 127, 130, 402, 435
BmcAI AGTACT 1 cut(s) 860
Bme1390I CCNGG 5 cut(s) 253, 306, 378, 834, 1002
Bme18I GGWCC 2 cut(s) 308, 656
BmeT110I CYCGRG 1 cut(s) 764
BmgT120I GGNCC 3 cut(s) 308, 656, 1097
BmiI GGNNCC 3 cut(s) 310, 331, 657
BmrFI CCNGG 5 cut(s) 253, 306, 378, 834, 1002
BmrI ACTGGG 2 cut(s) 958, 1104
BmsI GCATC 2 cut(s) 856, 913
BmuI ACTGGG 2 cut(s) 958, 1104
BpiI GAAGAC 1 cut(s) 383
Bpu1102I GCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 253
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 833, 1000, 1001
BsaWI WCCGGW 1 cut(s) 68
Bse118I RCCGGY 2 cut(s) 94, 353
Bse1I ACTGG 3 cut(s) 221, 953, 1099
Bse3DI GCAATG 2 cut(s) 395, 514
BseBI CCWGG 4 cut(s) 306, 378, 834, 1002
BseDI CCNNGG 3 cut(s) 833, 1000, 1001
BseGI GGATG 2 cut(s) 244, 555
BseMI GCAATG 2 cut(s) 395, 514
BseMII CTCAG 2 cut(s) 861, 933
BseNI ACTGG 3 cut(s) 221, 953, 1099
BseXI GCAGC 3 cut(s) 2, 412, 420
BseYI CCCAGC 2 cut(s) 472, 892
Bsh1285I CGRYCG 1 cut(s) 271
BshFI GGCC 5 cut(s) 94, 220, 419, 461, 1099
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 4 cut(s) 69, 95, 252, 354
BslFI GGGAC 3 cut(s) 161, 294, 669
BsmAI GTCTC 1 cut(s) 545
BsmFI GGGAC 3 cut(s) 161, 294, 669
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 5 cut(s) 94, 220, 419, 461, 1099
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 606
Bsp143I GATC 4 cut(s) 492, 582, 877, 953
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 4 cut(s) 125, 128, 653, 963
BspANI GGCC 5 cut(s) 94, 220, 419, 461, 1099
BspCNI CTCAG 2 cut(s) 860, 932
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 310, 331, 657
BspMI ACCTGC 1 cut(s) 306
BspPI GGATC 1 cut(s) 961
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 395, 514
BsrFI RCCGGY 2 cut(s) 94, 353
BsrI ACTGG 3 cut(s) 221, 953, 1099
BssAI RCCGGY 2 cut(s) 94, 353
BssECI CCNNGG 3 cut(s) 833, 1000, 1001
BssMI GATC 4 cut(s) 492, 582, 877, 953
BssNI GRCGYC 1 cut(s) 351
BssSI CACGAG 1 cut(s) 195
Bst2BI CACGAG 1 cut(s) 195
Bst2UI CCWGG 4 cut(s) 306, 378, 834, 1002
Bst4CI ACNGT 4 cut(s) 77, 269, 294, 385
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 96
BstDEI CTNAG 4 cut(s) 404, 740, 847, 919
BstF5I GGATG 2 cut(s) 244, 555
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 4 cut(s) 495, 585, 880, 956
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 4 cut(s) 492, 582, 877, 953
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 504
BstNI CCWGG 4 cut(s) 306, 378, 834, 1002
BstNSI RCATGY 1 cut(s) 1130
BstSCI CCNGG 5 cut(s) 251, 304, 376, 832, 1000
BstV1I GCAGC 3 cut(s) 2, 412, 420
BstV2I GAAGAC 1 cut(s) 383
BstX2I RGATCY 1 cut(s) 953
BstYI RGATCY 1 cut(s) 953
BsuRI GGCC 5 cut(s) 94, 220, 419, 461, 1099
BtsCI GGATG 2 cut(s) 244, 555
BtsIMutI CAGTG 2 cut(s) 732, 1035
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 96
CciI TCATGA 1 cut(s) 106
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 94, 353
Cfr13I GGNCC 3 cut(s) 308, 656, 1097
CseI GACGC 1 cut(s) 359
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 3 cut(s) 295, 714, 859
CviAII CATG 2 cut(s) 107, 1127
CviQI GTAC 3 cut(s) 295, 714, 859
DdeI CTNAG 4 cut(s) 404, 740, 847, 919
DpnI GATC 4 cut(s) 494, 584, 879, 955
DpnII GATC 4 cut(s) 492, 582, 877, 953
EaeI YGGCCR 1 cut(s) 218
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 2 cut(s) 308, 656
Eco57I CTGAAG 1 cut(s) 327
Eco88I CYCGRG 1 cut(s) 764
EcoO109I RGGNCCY 1 cut(s) 656
EcoRII CCWGG 4 cut(s) 304, 376, 832, 1000
EcoT22I ATGCAT 1 cut(s) 888
FaeI CATG 2 cut(s) 110, 1130
FaqI GGGAC 3 cut(s) 161, 294, 669
FatI CATG 2 cut(s) 106, 1126
FauI CCCGC 1 cut(s) 646
FauNDI CATATG 1 cut(s) 223
FbaI TGATCA 2 cut(s) 492, 582
FblI GTMKAC 1 cut(s) 670
Fnu4HI GCNGC 5 cut(s) 16, 126, 129, 401, 434
FokI GGATG 2 cut(s) 231, 542
Fsp4HI GCNGC 5 cut(s) 16, 126, 129, 401, 434
FspBI CTAG 2 cut(s) 189, 699
GlaI GCGC 1 cut(s) 193
GluI GCNGC 5 cut(s) 16, 126, 129, 401, 434
GsaI CCCAGC 2 cut(s) 476, 896
HaeIII GGCC 5 cut(s) 94, 220, 419, 461, 1099
HapII CCGG 4 cut(s) 69, 95, 252, 354
HgaI GACGC 1 cut(s) 359
HhaI GCGC 1 cut(s) 194
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 2 cut(s) 110, 1130
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HincII GTYRAC 2 cut(s) 594, 1048
HindII GTYRAC 2 cut(s) 594, 1048
HinfI GANTC 1 cut(s) 149
HpaII CCGG 4 cut(s) 69, 95, 252, 354
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 4 cut(s) 487, 594, 671, 1048
Hpy188I TCNGA 2 cut(s) 265, 922
Hpy188III TCNNGA 3 cut(s) 107, 365, 766
Hpy8I GTNNAC 4 cut(s) 487, 594, 671, 1048
Hpy99I CGWCG 2 cut(s) 269, 353
HpyAV CCTTC 4 cut(s) 71, 115, 624, 684
HpyCH4III ACNGT 4 cut(s) 77, 269, 294, 385
HpyCH4V TGCA 6 cut(s) 18, 301, 400, 436, 641, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 504
HpyF3I CTNAG 4 cut(s) 404, 740, 847, 919
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 2 cut(s) 110, 1130
HspAI GCGC 1 cut(s) 192
KroI GCCGGC 1 cut(s) 94
KroNI GCCGGC 1 cut(s) 96
Ksp22I TGATCA 2 cut(s) 492, 582
Kzo9I GATC 4 cut(s) 492, 582, 877, 953
LmnI GCTCC 2 cut(s) 609, 941
Lsp1109I GCAGC 3 cut(s) 2, 412, 420
LweI GCATC 2 cut(s) 856, 913
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 2 cut(s) 189, 699
MaeIII GTNAC 3 cut(s) 71, 995, 1090
MalI GATC 4 cut(s) 494, 584, 879, 955
MboI GATC 4 cut(s) 492, 582, 877, 953
MboII GAAGA 6 cut(s) 229, 353, 383, 436, 467, 770
MflI RGATCY 1 cut(s) 953
MhlI GDGCHC 1 cut(s) 606
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 8 cut(s) 51, 85, 200, 316, 532, 566, 1006, 1055
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 288, 798
MnlI CCTC 3 cut(s) 451, 620, 818
Mox20I TGGCCA 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 888
MroNI GCCGGC 1 cut(s) 94
MscI TGGCCA 1 cut(s) 220
MseI TTAA 3 cut(s) 183, 414, 1110
MslI CAYNNNNRTG 1 cut(s) 105
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 4 cut(s) 69, 95, 252, 354
MspR9I CCNGG 5 cut(s) 253, 306, 378, 834, 1002
Mva1269I GAATGC 1 cut(s) 888
MvaI CCWGG 4 cut(s) 306, 378, 834, 1002
MwoI GCNNNNNNNGC 1 cut(s) 504
NaeI GCCGGC 1 cut(s) 96
NciI CCSGG 1 cut(s) 253
NdeI CATATG 1 cut(s) 223
NdeII GATC 4 cut(s) 492, 582, 877, 953
NgoMIV GCCGGC 1 cut(s) 94
NlaIII CATG 2 cut(s) 110, 1130
NlaIV GGNNCC 3 cut(s) 310, 331, 657
NmuCI GTSAC 2 cut(s) 71, 995
NsiI ATGCAT 1 cut(s) 888
NspI RCATGY 1 cut(s) 1130
PaeR7I CTCGAG 1 cut(s) 764
PagI TCATGA 1 cut(s) 106
PasI CCCWGGG 1 cut(s) 1001
PciI ACATGT 1 cut(s) 1126
PctI GAATGC 1 cut(s) 888
PdiI GCCGGC 1 cut(s) 96
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 5 cut(s) 17, 127, 130, 402, 435
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 656
PscI ACATGT 1 cut(s) 1126
Psp5II RGGWCCY 1 cut(s) 656
Psp6I CCWGG 4 cut(s) 304, 376, 832, 1000
PspFI CCCAGC 2 cut(s) 472, 892
PspGI CCWGG 4 cut(s) 304, 376, 832, 1000
PspN4I GGNNCC 3 cut(s) 310, 331, 657
PspPI GGNCC 3 cut(s) 308, 656, 1097
PspPPI RGGWCCY 1 cut(s) 656
PsuI RGATCY 1 cut(s) 953
RsaI GTAC 3 cut(s) 296, 715, 860
RsaNI GTAC 3 cut(s) 295, 714, 859
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 183, 414, 1110
SatI GCNGC 5 cut(s) 16, 126, 129, 401, 434
Sau3AI GATC 4 cut(s) 492, 582, 877, 953
Sau96I GGNCC 3 cut(s) 308, 656, 1097
ScaI AGTACT 1 cut(s) 860
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 5 cut(s) 253, 306, 378, 834, 1002
SduI GDGCHC 1 cut(s) 606
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 2 cut(s) 856, 913
Sfr274I CTCGAG 1 cut(s) 764
SinI GGWCC 2 cut(s) 308, 656
SlaI CTCGAG 1 cut(s) 764
SmiMI CAYNNNNRTG 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 764
SmoI CTYRAG 1 cut(s) 764
Sse9I AATT 8 cut(s) 51, 85, 200, 316, 532, 566, 1006, 1055
SsiI CCGC 4 cut(s) 125, 128, 653, 963
SspMI CTAG 2 cut(s) 189, 699
StyD4I CCNGG 5 cut(s) 251, 304, 376, 832, 1000
TaaI ACNGT 4 cut(s) 77, 269, 294, 385
TaqI TCGA 3 cut(s) 765, 880, 1020
TasI AATT 8 cut(s) 51, 85, 200, 316, 532, 566, 1006, 1055
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 128, 131
Tru1I TTAA 3 cut(s) 183, 414, 1110
Tru9I TTAA 3 cut(s) 183, 414, 1110
TscAI CASTG 2 cut(s) 739, 1042
TseFI GTSAC 2 cut(s) 71, 995
TseI GCWGC 3 cut(s) 15, 400, 433
Tsp45I GTSAC 2 cut(s) 71, 995
TspDTI ATGAA 2 cut(s) 468, 984
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 2 cut(s) 739, 1042
VpaK11BI GGWCC 2 cut(s) 308, 656
XapI RAATTY 1 cut(s) 566
XceI RCATGY 1 cut(s) 1130
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 670
XspI CTAG 2 cut(s) 189, 699
ZrmI AGTACT 1 cut(s) 860
Zsp2I ATGCAT 1 cut(s) 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.