Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

59940795 .. 59942891

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG443000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGCAGCTCAGTTTGCAAATCTTCCTTTGCCACCACCATACCTGGAACCTGGTGCTCATCAATTCAGTGATGGAACCAACTTTGCTTCTGCCGGAGCTGGTGTTCTGCCTGAAACTCAACCCGGAACGATAGATCTTCCAAGTCAGTTGAGCAATTTTAGGGACATGAAGAAGTCACTGCATCAGAAATTGGGTGACAAAGAGGTTAAGAAGTTGCTGGGGAGAGCTGTTTATTTCTTCAGCATTGGAGGAAATGACTACATTAACCTCTTTTCCCAACAGCCAAAAGCTCCTCATAGCTACAAGAGGCAATATGTAGCAATGGTGATCAGGAACCTGACCATTGTGCTCAAAGAAATATATGATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGCACCTCTGGGCTGCATACCTGCAGTGAAATCAGGAAATCCTGATGTTGGTAGTAAATGTCTTGAAGAACCATTAAAGCTGGCCAGACTACATAATAGAGCTCTTTCTACTGCCCTCAAGAAGTTAGAGAACCACTTACCAGGATTCAAGTACTCAATATTTGATTACTATAATGCACTTGGGGACAGAGTTAACGATCCTTCAAAATATGGCTTCAAGAATGGGACATCTGCTTGTTGTGGTAGTGGGGCATTTAGAGGGTCTAATTGTGGGACAGAACCATACGAGTTATGCAGCAACGCCAGTGAGTATGTGTGGTTTGATGGTGGTCATACAACTGAAAGTGCCAACCTCCAACTAGCTGAGCTAATATGGAGTGGACCTTCAAATGTGACGGGGCCTTACACTATGAAACAGCTATTTGAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

278

Amino Acids

30.4

Weight (kDa)

8.62

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	13 - 258	1.7e-20	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	593
AcoI	YGGCCR	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	449
AgsI	TTSAA	6 cut(s)	467, 550, 606, 619, 789, 827
AjnI	CCWGG	3 cut(s)	45, 52, 541
AloI	GAACNNNNNNTCC	2 cut(s)	90, 122
Alw21I	GWGCWC	3 cut(s)	61, 354, 505
AlwI	GGATC	1 cut(s)	593
AoxI	GGCC	2 cut(s)	483, 800
ApeKI	GCWGC	4 cut(s)	5, 8, 414, 696
AspS9I	GGNCC	2 cut(s)	782, 800
AsuC2I	CCSGG	1 cut(s)	126
AsuHPI	GGTGA	2 cut(s)	209, 340
AvaII	GGWCC	1 cut(s)	782
BalI	TGGCCA	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	505
Bbv12I	GWGCWC	3 cut(s)	61, 354, 505
BbvI	GCAGC	3 cut(s)	20, 401, 708
BccI	CCATC	2 cut(s)	68, 719
BciT130I	CCWGG	3 cut(s)	47, 54, 543
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	126
BfaI	CTAG	1 cut(s)	761
BfmI	CTRYAG	2 cut(s)	6, 423
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	4 cut(s)	6, 9, 415, 697
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	4 cut(s)	7, 10, 416, 698
BmcAI	AGTACT	1 cut(s)	554
Bme1390I	CCNGG	4 cut(s)	47, 54, 126, 543
Bme18I	GGWCC	1 cut(s)	782
BmgT120I	GGNCC	2 cut(s)	782, 800
BmiI	GGNNCC	5 cut(s)	51, 79, 338, 405, 801
BmrFI	CCNGG	4 cut(s)	47, 54, 126, 543
BmsI	GCATC	1 cut(s)	193
Bpu1102I	GCTNAGC	1 cut(s)	765
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	449
Bse1I	ACTGG	1 cut(s)	705
Bse3DI	GCAATG	1 cut(s)	330
BseBI	CCWGG	3 cut(s)	47, 54, 543
BseLI	CCNNNNNNNGG	1 cut(s)	449
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	26, 756
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	3 cut(s)	20, 401, 708
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	2 cut(s)	485, 802
BshNI	GGYRCC	1 cut(s)	403
BsiHKAI	GWGCWC	3 cut(s)	61, 354, 505
BsiSI	CCGG	2 cut(s)	96, 126
BslFI	GGGAC	4 cut(s)	179, 599, 640, 688
BslI	CCNNNNNNNGG	1 cut(s)	449
BsmFI	GGGAC	4 cut(s)	179, 599, 640, 688
BsnI	GGCC	2 cut(s)	485, 802
Bsp1286I	GDGCHC	3 cut(s)	61, 354, 505
Bsp143I	GATC	3 cut(s)	136, 330, 598
Bsp1720I	GCTNAGC	1 cut(s)	765
BspANI	GGCC	2 cut(s)	485, 802
BspCNI	CTCAG	2 cut(s)	25, 757
BspLI	GGNNCC	5 cut(s)	51, 79, 338, 405, 801
BspMAI	CTGCAG	2 cut(s)	10, 427
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	705
BssMI	GATC	3 cut(s)	136, 330, 598
Bst2UI	CCWGG	3 cut(s)	47, 54, 543
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	2 cut(s)	12, 765
BstKTI	GATC	3 cut(s)	139, 333, 601
BstMBI	GATC	3 cut(s)	136, 330, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	3 cut(s)	47, 54, 543
BstSCI	CCNGG	4 cut(s)	45, 52, 124, 541
BstSFI	CTRYAG	2 cut(s)	6, 423
BstV1I	GCAGC	3 cut(s)	20, 401, 708
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	485, 802
BtsI	GCAGTG	2 cut(s)	179, 432
BtsIMutI	CAGTG	4 cut(s)	76, 179, 432, 712
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	782, 800
CsiI	ACCWGGT	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	1 cut(s)	169
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	12, 765
DpnI	GATC	3 cut(s)	138, 332, 600
DpnII	GATC	3 cut(s)	136, 330, 598
EaeI	YGGCCR	1 cut(s)	483
Ecl136II	GAGCTC	1 cut(s)	503
Eco24I	GRGCYC	1 cut(s)	505
Eco47I	GGWCC	1 cut(s)	782
Eco53kI	GAGCTC	1 cut(s)	503
Eco57I	CTGAAG	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	503
EcoO109I	RGGNCCY	1 cut(s)	800
EcoRII	CCWGG	3 cut(s)	45, 52, 541
EcoT38I	GRGCYC	1 cut(s)	505
FaeI	CATG	1 cut(s)	172
FaqI	GGGAC	4 cut(s)	179, 599, 640, 688
FatI	CATG	1 cut(s)	168
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	6, 9, 415, 697
FriOI	GRGCYC	1 cut(s)	505
Fsp4HI	GCNGC	4 cut(s)	6, 9, 415, 697
FspBI	CTAG	1 cut(s)	761
GluI	GCNGC	4 cut(s)	6, 9, 415, 697
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	485, 802
HapII	CCGG	2 cut(s)	96, 126
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HinfI	GANTC	1 cut(s)	546
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	2 cut(s)	96, 126
HphI	GGTGA	2 cut(s)	209, 340
Hpy166II	GTNNAC	2 cut(s)	595, 782
Hpy188I	TCNGA	2 cut(s)	189, 396
Hpy188III	TCNNGA	7 cut(s)	334, 435, 443, 464, 520, 619, 834
Hpy8I	GTNNAC	2 cut(s)	595, 782
HpyAV	CCTTC	3 cut(s)	372, 612, 795
HpyCH4V	TGCA	8 cut(s)	8, 20, 184, 389, 417, 425, 578, 696
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	2 cut(s)	12, 765
Hsp92II	CATG	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	136, 330, 598
LmnI	GCTCC	2 cut(s)	98, 298
Lsp1109I	GCAGC	3 cut(s)	20, 401, 708
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	52
MaeI	CTAG	1 cut(s)	761
MaeIII	GTNAC	3 cut(s)	177, 197, 793
MalI	GATC	3 cut(s)	138, 332, 600
MboI	GATC	3 cut(s)	136, 330, 598
MboII	GAAGA	5 cut(s)	17, 131, 184, 232, 479
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	61, 354, 505
MlsI	TGGCCA	1 cut(s)	485
MluCI	AATT	5 cut(s)	65, 157, 191, 384, 667
MluNI	TGGCCA	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	781
Mox20I	TGGCCA	1 cut(s)	485
MscI	TGGCCA	1 cut(s)	485
MseI	TTAA	4 cut(s)	210, 267, 476, 594
Msp20I	TGGCCA	1 cut(s)	485
MspI	CCGG	2 cut(s)	96, 126
MspR9I	CCNGG	4 cut(s)	47, 54, 126, 543
MvaI	CCWGG	3 cut(s)	47, 54, 543
MwoI	GCNNNNNNNGC	1 cut(s)	17
NciI	CCSGG	1 cut(s)	126
NdeII	GATC	3 cut(s)	136, 330, 598
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	5 cut(s)	51, 79, 338, 405, 801
NmuCI	GTSAC	3 cut(s)	177, 197, 793
PfeI	GAWTC	1 cut(s)	546
PkrI	GCNGC	4 cut(s)	7, 10, 416, 698
Psp124BI	GAGCTC	1 cut(s)	505
Psp6I	CCWGG	3 cut(s)	45, 52, 541
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	3 cut(s)	45, 52, 541
PspN4I	GGNNCC	5 cut(s)	51, 79, 338, 405, 801
PspPI	GGNCC	2 cut(s)	782, 800
PstI	CTGCAG	2 cut(s)	10, 427
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
SacI	GAGCTC	1 cut(s)	505
SaqAI	TTAA	4 cut(s)	210, 267, 476, 594
SatI	GCNGC	4 cut(s)	6, 9, 415, 697
Sau3AI	GATC	3 cut(s)	136, 330, 598
Sau96I	GGNCC	2 cut(s)	782, 800
ScaI	AGTACT	1 cut(s)	554
ScrFI	CCNGG	4 cut(s)	47, 54, 126, 543
SduI	GDGCHC	3 cut(s)	61, 354, 505
SexAI	ACCWGGT	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	2 cut(s)	6, 423
SinI	GGWCC	1 cut(s)	782
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	65, 157, 191, 384, 667
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	1 cut(s)	761
SstI	GAGCTC	1 cut(s)	505
StyD4I	CCNGG	4 cut(s)	45, 52, 124, 541
TasI	AATT	5 cut(s)	65, 157, 191, 384, 667
TatI	WGTACW	1 cut(s)	552
TfiI	GAWTC	1 cut(s)	546
Tru1I	TTAA	4 cut(s)	210, 267, 476, 594
Tru9I	TTAA	4 cut(s)	210, 267, 476, 594
TscAI	CASTG	4 cut(s)	76, 186, 432, 712
TseFI	GTSAC	3 cut(s)	177, 197, 793
TseI	GCWGC	4 cut(s)	5, 8, 414, 696
Tsp45I	GTSAC	3 cut(s)	177, 197, 793
TspDTI	ATGAA	2 cut(s)	185, 827
TspRI	CASTG	4 cut(s)	76, 186, 432, 712
VpaK11BI	GGWCC	1 cut(s)	782
XspI	CTAG	1 cut(s)	761
ZrmI	AGTACT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.