Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

21425657 .. 21427890

Gene Structure 2234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCTTCCACCCTACCTGCAACCAGATCCAAAAGATTTTACTGATGGAGCCAGCTTTGCTTCAGCTGGAGCTGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAACCTTCCATTGCAGTTAAGCTATTTTAAGAACGTAACGGAGTTGCTGCAAGAGCAACTGGGTGATGAAGAAGCCAAGAAGTTGCTGGGGAGCGCTGTGTACTTGATTAGCATGGGAGGCAATGATTATTTTACATTCTACGCCAAATACCAAGAAAATGCCACCGAGTCCCTCCAGCAGAAATACATCGAAATTGTGATCGGCAACTTGACCACTGTGCTCCAAGGAATATACGACTTAGGGGGAAGGAAAATCGCATTTCAAAATGCCGGACCTCTTGGGTGCTTACCTCACTCAAAACAATCATACGATTCCCACCTTGTTCGTGGGTGCGTTGAAGGGCTCCAGAGTCTAGCGAGGCAGCACAACAAAGCTCTAGCTAGTGTCCTCAAAGAGCTAGAGAGCCAGCTACCGGGATTCAAATATTCAATATTTGAGTACTATGATGCACTTGGCGACCGAGTACGTAACCCCGCTAAATACGGCTTTAAGGATGGGACAGATGCGTGTTGCGGTAGAGGGGCATACAGAGGTTCTGATTGCGGTGGGCTTAATGGAACAGTAGCATATGAGTTATGCAGTAACCCTGGTGACAGTGTGTGGTTTGATGGTAGTCACACATCTGAAAGGGCAAACCTGCAGTTAGCTCAGCTGATATGGAGTGGAACACCAAATGTGACGGGGCCTTACAATGTCAAACAGCTTTTTGAACAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

274

Amino Acids

29.94

Weight (kDa)

5.0

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	11 - 254	3.2e-21	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	24, 750
AciI	CCGC	3 cut(s)	579, 618, 648
AclWI	GGATC	2 cut(s)	20, 86
AcuI	CTGAAG	1 cut(s)	45
AfaI	GTAC	3 cut(s)	206, 545, 570
AfeI	AGCGCT	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	6 cut(s)	86, 368, 443, 526, 534, 815
AjnI	CCWGG	2 cut(s)	94, 691
AloI	GAACNNNNNNTCC	2 cut(s)	60, 92
Alw21I	GWGCWC	1 cut(s)	327
AlwI	GGATC	2 cut(s)	20, 86
Aor51HI	AGCGCT	1 cut(s)	199
AoxI	GGCC	1 cut(s)	788
ApeKI	GCWGC	2 cut(s)	151, 466
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	377, 788
AsuC2I	CCSGG	1 cut(s)	519
AsuHPI	GGTGA	2 cut(s)	179, 707
AvaII	GGWCC	1 cut(s)	377
BanII	GRGCYC	1 cut(s)	450
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	138, 478
BccI	CCATC	3 cut(s)	38, 593, 707
BceAI	ACGGC	1 cut(s)	604
BciT130I	CCWGG	2 cut(s)	96, 693
BcnI	CCSGG	1 cut(s)	519
BfaI	CTAG	5 cut(s)	80, 458, 482, 486, 503
BfmI	CTRYAG	1 cut(s)	743
BfoI	RGCGCY	1 cut(s)	201
BfuAI	ACCTGC	2 cut(s)	24, 750
BisI	GCNGC	2 cut(s)	152, 467
BlpI	GCTNAGC	1 cut(s)	753
BlsI	GCNGC	2 cut(s)	153, 468
BmcAI	AGTACT	1 cut(s)	545
Bme1390I	CCNGG	3 cut(s)	96, 519, 693
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	377, 788
BmiI	GGNNCC	3 cut(s)	49, 449, 789
BmrFI	CCNGG	3 cut(s)	96, 519, 693
BmrI	ACTGGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	541, 598
BmuI	ACTGGG	1 cut(s)	173
BpmI	CTGGAG	4 cut(s)	87, 93, 263, 434
Bpu1102I	GCTNAGC	1 cut(s)	753
BpuMI	CCSGG	1 cut(s)	519
BsaAI	YACGTR	1 cut(s)	572
BsaJI	CCNNGG	2 cut(s)	328, 691
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 66, 90, 96
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	113, 232
BseBI	CCWGG	2 cut(s)	96, 693
BseDI	CCNNGG	2 cut(s)	328, 691
BseGI	GGATG	1 cut(s)	604
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMI	GCAATG	2 cut(s)	113, 232
BseMII	CTCAG	1 cut(s)	767
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	138, 478
BseYI	CCCAGC	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	565
BshFI	GGCC	1 cut(s)	790
BsiEI	CGRYCG	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	2 cut(s)	375, 518
BslFI	GGGAC	2 cut(s)	259, 616
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmFI	GGGAC	2 cut(s)	259, 616
BsnI	GGCC	1 cut(s)	790
Bsp1286I	GDGCHC	2 cut(s)	327, 450
Bsp143I	GATC	3 cut(s)	25, 91, 303
Bsp1720I	GCTNAGC	1 cut(s)	753
BspACI	CCGC	3 cut(s)	579, 618, 648
BspANI	GGCC	1 cut(s)	790
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	49, 449, 789
BspMAI	CTGCAG	1 cut(s)	747
BspMI	ACCTGC	2 cut(s)	24, 750
BspPI	GGATC	2 cut(s)	20, 86
BsrDI	GCAATG	2 cut(s)	113, 232
BsrI	ACTGG	1 cut(s)	168
BssECI	CCNNGG	2 cut(s)	328, 691
BssMI	GATC	3 cut(s)	25, 91, 303
BssT1I	CCWWGG	1 cut(s)	328
Bst2UI	CCWGG	2 cut(s)	96, 693
Bst4CI	ACNGT	3 cut(s)	322, 667, 701
BstBAI	YACGTR	1 cut(s)	572
BstC8I	GCNNGC	2 cut(s)	52, 512
BstDEI	CTNAG	2 cut(s)	343, 753
BstF5I	GGATG	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	28, 94, 306
BstMBI	GATC	3 cut(s)	25, 91, 303
BstMCI	CGRYCG	1 cut(s)	565
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 157, 222
BstNI	CCWGG	2 cut(s)	96, 693
BstSCI	CCNGG	3 cut(s)	94, 517, 691
BstSFI	CTRYAG	1 cut(s)	743
BstSNI	TACGTA	1 cut(s)	572
BstV1I	GCAGC	2 cut(s)	138, 478
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	2 cut(s)	318, 706
BveI	ACCTGC	2 cut(s)	24, 750
Cac8I	GCNNGC	2 cut(s)	52, 512
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	377, 788
Csp6I	GTAC	3 cut(s)	205, 544, 569
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	3 cut(s)	205, 544, 569
DdeI	CTNAG	2 cut(s)	343, 753
DpnI	GATC	3 cut(s)	27, 93, 305
DpnII	GATC	3 cut(s)	25, 91, 303
Eco105I	TACGTA	1 cut(s)	572
Eco130I	CCWWGG	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	788
EcoRII	CCWGG	2 cut(s)	94, 691
EcoT14I	CCWWGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	328
FaeI	CATG	1 cut(s)	220
FaqI	GGGAC	2 cut(s)	259, 616
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	586
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	2 cut(s)	152, 467
FokI	GGATG	1 cut(s)	611
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	2 cut(s)	152, 467
FspBI	CTAG	5 cut(s)	80, 458, 482, 486, 503
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	2 cut(s)	152, 467
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	4 cut(s)	87, 93, 263, 434
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	1 cut(s)	790
HapII	CCGG	2 cut(s)	375, 518
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	4 cut(s)	272, 416, 454, 522
HpaII	CCGG	2 cut(s)	375, 518
HphI	GGTGA	2 cut(s)	179, 707
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	643, 730
Hpy188III	TCNNGA	1 cut(s)	451
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	119, 345, 437
HpyCH4III	ACNGT	3 cut(s)	322, 667, 701
HpyCH4IV	ACGT	2 cut(s)	138, 571
HpyCH4V	TGCA	6 cut(s)	19, 118, 154, 554, 684, 745
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 157, 222
HpyF3I	CTNAG	2 cut(s)	343, 753
HpySE526I	ACGT	2 cut(s)	138, 571
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	198
Kzo9I	GATC	3 cut(s)	25, 91, 303
LmnI	GCTCC	5 cut(s)	47, 68, 195, 330, 453
Lsp1109I	GCAGC	2 cut(s)	138, 478
LweI	GCATC	2 cut(s)	541, 598
MaeI	CTAG	5 cut(s)	80, 458, 482, 486, 503
MaeII	ACGT	2 cut(s)	138, 571
MaeIII	GTNAC	6 cut(s)	139, 572, 686, 695, 719, 781
MalI	GATC	3 cut(s)	27, 93, 305
MboI	GATC	3 cut(s)	25, 91, 303
MboII	GAAGA	1 cut(s)	185
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	327, 450
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	2 cut(s)	281, 463
MnlI	CCTC	8 cut(s)	215, 287, 390, 405, 456, 503, 617, 629
MseI	TTAA	4 cut(s)	122, 132, 594, 657
MspA1I	CMGCKG	2 cut(s)	65, 757
MspI	CCGG	2 cut(s)	375, 518
MspR9I	CCNGG	3 cut(s)	96, 519, 693
MvaI	CCWGG	2 cut(s)	96, 693
MwoI	GCNNNNNNNGC	3 cut(s)	56, 157, 222
NciI	CCSGG	1 cut(s)	519
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	25, 91, 303
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	3 cut(s)	49, 449, 789
NmuCI	GTSAC	3 cut(s)	695, 719, 781
PfeI	GAWTC	2 cut(s)	416, 522
PfoI	TCCNGGA	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	153, 468
PleI	GAGTC	2 cut(s)	280, 462
PpsI	GAGTC	2 cut(s)	280, 462
Ppu21I	YACGTR	1 cut(s)	572
Psp6I	CCWGG	2 cut(s)	94, 691
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	2 cut(s)	94, 691
PspN4I	GGNNCC	3 cut(s)	49, 449, 789
PspPI	GGNCC	2 cut(s)	377, 788
PstI	CTGCAG	1 cut(s)	747
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	2 cut(s)	65, 757
RsaI	GTAC	3 cut(s)	206, 545, 570
RsaNI	GTAC	3 cut(s)	205, 544, 569
SaqAI	TTAA	4 cut(s)	122, 132, 594, 657
SatI	GCNGC	2 cut(s)	152, 467
Sau3AI	GATC	3 cut(s)	25, 91, 303
Sau96I	GGNCC	2 cut(s)	377, 788
ScaI	AGTACT	1 cut(s)	545
SchI	GAGTC	2 cut(s)	281, 463
ScrFI	CCNGG	3 cut(s)	96, 519, 693
SduI	GDGCHC	2 cut(s)	327, 450
SfaNI	GCATC	2 cut(s)	541, 598
SfcI	CTRYAG	1 cut(s)	743
SinI	GGWCC	1 cut(s)	377
SnaBI	TACGTA	1 cut(s)	572
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	3 cut(s)	579, 618, 648
SspI	AATATT	2 cut(s)	530, 537
SspMI	CTAG	5 cut(s)	80, 458, 482, 486, 503
StyD4I	CCNGG	3 cut(s)	94, 517, 691
StyI	CCWWGG	1 cut(s)	328
TaaI	ACNGT	3 cut(s)	322, 667, 701
TaiI	ACGT	2 cut(s)	141, 574
TaqI	TCGA	1 cut(s)	294
TaqII	GACCGA	1 cut(s)	579
TasI	AATT	1 cut(s)	297
TatI	WGTACW	2 cut(s)	204, 543
TfiI	GAWTC	2 cut(s)	416, 522
Tru1I	TTAA	4 cut(s)	122, 132, 594, 657
Tru9I	TTAA	4 cut(s)	122, 132, 594, 657
TscAI	CASTG	2 cut(s)	325, 706
TseFI	GTSAC	3 cut(s)	695, 719, 781
TseI	GCWGC	2 cut(s)	151, 466
Tsp45I	GTSAC	3 cut(s)	695, 719, 781
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	2 cut(s)	325, 706
VpaK11BI	GGWCC	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 428
XspI	CTAG	5 cut(s)	80, 458, 482, 486, 503
ZrmI	AGTACT	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.