Rw2G036180

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
59492641 .. 59498281
5641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036180.1

Sequence Viewer

Length: 1143 bp
ATGGTGAGTCTTAGCTACATTGTTTACGTGTTGGCTAGCCTATTCAACCCAATTAGCTTCCTTCTCTACGGTCATCATCATGATCATCCTGATCAGTACTCCAGTAGTACTAGTATAGAACACAATCATAATAAGGTGGCGTTGTTTGTGTTTGGGGACTCGCCATTTGAGGCTGGAAACAACCAATACCTTCCTAATATTACCGTAGAAGATGATGCAGCGATAGCCTGGCCATATGGAGAAACATACTTCCACCATTCCACCGGAAGATTTTGCGATGGACGTATTGTCCCAGATTTTATCGCTAAGTTTGGAAAACTGCCAATGCTTCCACCATATCTGCAACCTGGTCCACATGATTTTACTGATGGATCCAACTTTGCTTCAGGAGGAGCCGGAGTTCTTGAAACAACTAACCCAGGATCGTCAATAAGTCTTCCGACGCAGTTAAGCTATTTAAAAAATGTGGCAAAGTTGCTGGAGCTGAAGTTAGGTGATTTAGAAGCCAAACGTGTGCTGAGGACCGCTGTTTACTTGTTCAGCATCGGAGGGGTGGATGATATGGTCTTCTACTCTACATATCCAAATGCCACCGAGTCCCTGCGATCCGAATTCATAGCAAATGTGATTGGTAACTTGACCGTTGTGCTCAAAGAAATATACAACTTAGGAGGAAGGAAGATTGCATTTCAGAATGTAGGATCTCTTGGGTGCCAACCTATAAATAGACAATCATACGGTGCCATTGAAGGGTATGTTGAAGGACTTTTGACTTTGGCGAGGCTACACAATAGAGCTCTAGCTAATGTCCTCGAAGAACTAGAGCTAGAGCTATCGGGATTCAAATATTCAATATTTAACTACTATGATGCGCTTTTGGAACTATACCATAACCCTGCAAAACATGGGTTCACAAATGGGTCGGATGCATGTTGTGGTATAGGACCATACCGAGGAGATGATTGCGGCGGAGATAATGGAACCGAACCATATGACTTGTGCCCAAACCCAGGTGACTATGTGTGGTGGGATGGTGGCCATTCGACTGAAAGAGCAAACCTTAAATTGGCAGAGCTAATATGGAGTGGCACGCTAAATACTACCGGGCCTTACAATGTCAAACAGTTTTTTCAGCAAGTTTGA

Protein Analysis

380

Amino Acids

41.93

Weight (kDa)

5.16

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 48 - 360 3.2e-20 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 711, 740
AciI CCGC 3 cut(s) 525, 966, 969
AclWI GGATC 5 cut(s) 366, 379, 430, 600, 709
AcoI YGGCCR 2 cut(s) 230, 1036
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 2 cut(s) 369, 506
AfaI GTAC 2 cut(s) 98, 109
AfiI CCNNNNNNNGG 4 cut(s) 750, 953, 1010, 1066
AflIII ACRYGT 2 cut(s) 27, 511
AgsI TTSAA 6 cut(s) 46, 407, 749, 761, 844, 852
AhdI GACNNNNNGTC 1 cut(s) 287
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 4 cut(s) 227, 346, 418, 1009
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 9 cut(s) 15, 57, 453, 484, 797, 803, 826, 832, 1075
AluI AGCT 9 cut(s) 15, 57, 453, 484, 797, 803, 826, 832, 1075
Alw21I GWGCWC 2 cut(s) 651, 799
AlwI GGATC 5 cut(s) 366, 379, 430, 600, 709
AoxI GGCC 3 cut(s) 230, 1036, 1106
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 611
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 1 cut(s) 874
AspS9I GGNCC 4 cut(s) 350, 522, 944, 1106
AsuC2I CCSGG 1 cut(s) 1105
AsuHPI GGTGA 3 cut(s) 16, 506, 1025
AsuNHI GCTAGC 1 cut(s) 35
AvaII GGWCC 3 cut(s) 350, 522, 944
BaeGI GKGCMC 1 cut(s) 1004
BalI TGGCCA 2 cut(s) 232, 1038
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 2 cut(s) 711, 740
BanII GRGCYC 1 cut(s) 799
BbsI GAAGAC 2 cut(s) 428, 559
Bbv12I GWGCWC 2 cut(s) 651, 799
BbvCI CCTCAGC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 272, 362, 1025
BciT130I CCWGG 4 cut(s) 229, 348, 420, 1011
BclI TGATCA 2 cut(s) 82, 91
BcnI CCSGG 1 cut(s) 1105
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 5 cut(s) 36, 111, 800, 821, 827
BisI GCNGC 2 cut(s) 219, 967
BlsI GCNGC 2 cut(s) 220, 968
BmcAI AGTACT 2 cut(s) 98, 109
Bme1390I CCNGG 5 cut(s) 229, 348, 420, 1011, 1105
Bme18I GGWCC 3 cut(s) 350, 522, 944
BmeRI GACNNNNNGTC 1 cut(s) 287
BmgT120I GGNCC 4 cut(s) 350, 522, 944, 1106
BmiI GGNNCC 5 cut(s) 373, 394, 713, 742, 982
BmrFI CCNGG 5 cut(s) 229, 348, 420, 1011, 1105
BmsI GCATC 4 cut(s) 205, 552, 859, 916
BmtI GCTAGC 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 428, 559
BpmI CTGGAG 2 cut(s) 85, 500
Bpu10I CCTNAGC 1 cut(s) 518
BpuMI CCSGG 1 cut(s) 1105
BsaAI YACGTR 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 418, 952, 1009
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 4 cut(s) 384, 414, 473, 503
Bsc4I CCNNNNNNNGG 4 cut(s) 750, 953, 1010, 1066
Bse1I ACTGG 1 cut(s) 102
BseBI CCWGG 4 cut(s) 229, 348, 420, 1011
BseDI CCNNGG 3 cut(s) 418, 952, 1009
BseGI GGATG 4 cut(s) 85, 562, 931, 1036
BseLI CCNNNNNNNGG 4 cut(s) 750, 953, 1010, 1066
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 102
BseRI GAGGAG 2 cut(s) 405, 969
BseSI GKGCMC 1 cut(s) 1004
BseXI GCAGC 1 cut(s) 230
BshFI GGCC 3 cut(s) 232, 1038, 1108
BshNI GGYRCC 2 cut(s) 711, 740
BsiHKAI GWGCWC 2 cut(s) 651, 799
BsiSI CCGG 3 cut(s) 264, 396, 1104
BslFI GGGAC 3 cut(s) 170, 275, 583
BslI CCNNNNNNNGG 4 cut(s) 750, 953, 1010, 1066
BsmFI GGGAC 3 cut(s) 170, 275, 583
BsnI GGCC 3 cut(s) 232, 1038, 1108
Bsp1286I GDGCHC 3 cut(s) 651, 799, 1004
Bsp143I GATC 6 cut(s) 82, 91, 371, 422, 605, 701
BspACI CCGC 3 cut(s) 525, 966, 969
BspANI GGCC 3 cut(s) 232, 1038, 1108
BspCNI CTCAG 1 cut(s) 510
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 5 cut(s) 373, 394, 713, 742, 982
BspOI GCTAGC 1 cut(s) 39
BspPI GGATC 5 cut(s) 366, 379, 430, 600, 709
BspT107I GGYRCC 2 cut(s) 711, 740
BsrI ACTGG 1 cut(s) 102
BssECI CCNNGG 3 cut(s) 418, 952, 1009
BssMI GATC 6 cut(s) 82, 91, 371, 422, 605, 701
Bst2UI CCWGG 4 cut(s) 229, 348, 420, 1011
Bst4CI ACNGT 5 cut(s) 71, 205, 643, 740, 1125
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 37, 1091
BstDEI CTNAG 4 cut(s) 11, 306, 518, 667
BstF5I GGATG 4 cut(s) 85, 562, 931, 1036
BstHHI GCGC 1 cut(s) 874
BstKTI GATC 6 cut(s) 85, 94, 374, 425, 608, 704
BstMBI GATC 6 cut(s) 82, 91, 371, 422, 605, 701
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 4 cut(s) 229, 348, 420, 1011
BstNSI RCATGY 1 cut(s) 933
BstSCI CCNGG 5 cut(s) 227, 346, 418, 1009, 1103
BstSLI GKGCMC 1 cut(s) 1004
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 2 cut(s) 428, 559
BstX2I RGATCY 2 cut(s) 371, 701
BstYI RGATCY 2 cut(s) 371, 701
BsuRI GGCC 3 cut(s) 232, 1038, 1108
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 4 cut(s) 85, 562, 931, 1036
Cac8I GCNNGC 2 cut(s) 37, 1091
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 874
Cfr13I GGNCC 4 cut(s) 350, 522, 944, 1106
CseI GACGC 1 cut(s) 451
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 2 cut(s) 97, 108
CviAII CATG 4 cut(s) 80, 356, 905, 930
CviQI GTAC 2 cut(s) 97, 108
DdeI CTNAG 4 cut(s) 11, 306, 518, 667
DpnI GATC 6 cut(s) 84, 93, 373, 424, 607, 703
DpnII GATC 6 cut(s) 82, 91, 371, 422, 605, 701
DraI TTTAAA 1 cut(s) 459
DriI GACNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 2 cut(s) 230, 1036
Eam1105I GACNNNNNGTC 1 cut(s) 287
EciI GGCGGA 1 cut(s) 984
Ecl136II GAGCTC 1 cut(s) 797
Eco24I GRGCYC 1 cut(s) 799
Eco47I GGWCC 3 cut(s) 350, 522, 944
Eco53kI GAGCTC 1 cut(s) 797
Eco57I CTGAAG 2 cut(s) 369, 506
EcoICRI GAGCTC 1 cut(s) 797
EcoRI GAATTC 1 cut(s) 611
EcoRII CCWGG 4 cut(s) 227, 346, 418, 1009
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 799
FaeI CATG 4 cut(s) 83, 359, 908, 933
FaqI GGGAC 3 cut(s) 170, 275, 583
FatI CATG 4 cut(s) 79, 355, 904, 929
FauNDI CATATG 2 cut(s) 235, 991
FbaI TGATCA 2 cut(s) 82, 91
Fnu4HI GCNGC 2 cut(s) 219, 967
FokI GGATG 4 cut(s) 72, 569, 938, 1043
FriOI GRGCYC 1 cut(s) 799
Fsp4HI GCNGC 2 cut(s) 219, 967
FspBI CTAG 5 cut(s) 36, 111, 800, 821, 827
GlaI GCGC 1 cut(s) 873
GluI GCNGC 2 cut(s) 219, 967
GsuI CTGGAG 2 cut(s) 85, 500
HaeIII GGCC 3 cut(s) 232, 1038, 1108
HapII CCGG 3 cut(s) 264, 396, 1104
HgaI GACGC 1 cut(s) 451
HhaI GCGC 1 cut(s) 874
Hin1II CATG 4 cut(s) 83, 359, 908, 933
Hin6I GCGC 1 cut(s) 872
HinP1I GCGC 1 cut(s) 872
HinfI GANTC 4 cut(s) 7, 158, 596, 840
HpaII CCGG 3 cut(s) 264, 396, 1104
HphI GGTGA 3 cut(s) 16, 506, 1025
Hpy166II GTNNAC 4 cut(s) 25, 353, 532, 912
Hpy188I TCNGA 5 cut(s) 441, 548, 610, 693, 925
Hpy188III TCNNGA 5 cut(s) 80, 89, 387, 404, 837
Hpy8I GTNNAC 4 cut(s) 25, 353, 532, 912
Hpy99I CGWCG 1 cut(s) 445
HpyAV CCTTC 5 cut(s) 71, 200, 669, 743, 755
HpyCH4III ACNGT 5 cut(s) 71, 205, 643, 740, 1125
HpyCH4IV ACGT 3 cut(s) 27, 283, 511
HpyCH4V TGCA 5 cut(s) 218, 343, 686, 899, 929
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 11, 306, 518, 667
HpySE526I ACGT 3 cut(s) 27, 283, 511
Hsp92II CATG 4 cut(s) 83, 359, 908, 933
HspAI GCGC 1 cut(s) 872
Ksp22I TGATCA 2 cut(s) 82, 91
Kzo9I GATC 6 cut(s) 82, 91, 371, 422, 605, 701
LmnI GCTCC 2 cut(s) 392, 481
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 4 cut(s) 205, 552, 859, 916
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 5 cut(s) 36, 111, 800, 821, 827
MaeII ACGT 3 cut(s) 27, 283, 511
MaeIII GTNAC 2 cut(s) 632, 1013
MalI GATC 6 cut(s) 84, 93, 373, 424, 607, 703
MboI GATC 6 cut(s) 82, 91, 371, 422, 605, 701
MboII GAAGA 6 cut(s) 221, 279, 428, 559, 691, 827
MflI RGATCY 2 cut(s) 371, 701
MhlI GDGCHC 3 cut(s) 651, 799, 1004
MlsI TGGCCA 2 cut(s) 232, 1038
MluCI AATT 3 cut(s) 51, 611, 1064
MluNI TGGCCA 2 cut(s) 232, 1038
MlyI GAGTC 3 cut(s) 16, 152, 605
MmeI TCCRAC 3 cut(s) 399, 464, 903
MnlI CCTC 8 cut(s) 163, 383, 513, 542, 665, 774, 821, 947
Mox20I TGGCCA 2 cut(s) 232, 1038
Mph1103I ATGCAT 1 cut(s) 931
MscI TGGCCA 2 cut(s) 232, 1038
MseI TTAA 4 cut(s) 449, 458, 858, 1062
MslI CAYNNNNRTG 1 cut(s) 78
Msp20I TGGCCA 2 cut(s) 232, 1038
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 3 cut(s) 264, 396, 1104
MspR9I CCNGG 5 cut(s) 229, 348, 420, 1011, 1105
MvaI CCWGG 4 cut(s) 229, 348, 420, 1011
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 1105
NdeI CATATG 2 cut(s) 235, 991
NdeII GATC 6 cut(s) 82, 91, 371, 422, 605, 701
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 4 cut(s) 83, 359, 908, 933
NlaIV GGNNCC 5 cut(s) 373, 394, 713, 742, 982
NmuCI GTSAC 1 cut(s) 1013
NsiI ATGCAT 1 cut(s) 931
NspI RCATGY 1 cut(s) 933
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 1 cut(s) 840
PkrI GCNGC 2 cut(s) 220, 968
PleI GAGTC 3 cut(s) 15, 152, 604
PpsI GAGTC 3 cut(s) 15, 152, 604
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 799
Psp6I CCWGG 4 cut(s) 227, 346, 418, 1009
PspGI CCWGG 4 cut(s) 227, 346, 418, 1009
PspN4I GGNNCC 5 cut(s) 373, 394, 713, 742, 982
PspPI GGNCC 4 cut(s) 350, 522, 944, 1106
PsuI RGATCY 2 cut(s) 371, 701
RsaI GTAC 2 cut(s) 98, 109
RsaNI GTAC 2 cut(s) 97, 108
RseI CAYNNNNRTG 1 cut(s) 78
SacI GAGCTC 1 cut(s) 799
SaqAI TTAA 4 cut(s) 449, 458, 858, 1062
SatI GCNGC 2 cut(s) 219, 967
Sau3AI GATC 6 cut(s) 82, 91, 371, 422, 605, 701
Sau96I GGNCC 4 cut(s) 350, 522, 944, 1106
ScaI AGTACT 2 cut(s) 98, 109
SchI GAGTC 3 cut(s) 16, 152, 605
ScrFI CCNGG 5 cut(s) 229, 348, 420, 1011, 1105
SduI GDGCHC 3 cut(s) 651, 799, 1004
SexAI ACCWGGT 1 cut(s) 346
SfaNI GCATC 4 cut(s) 205, 552, 859, 916
SinI GGWCC 3 cut(s) 350, 522, 944
SmiMI CAYNNNNRTG 1 cut(s) 78
SpeI ACTAGT 1 cut(s) 110
Sse9I AATT 3 cut(s) 51, 611, 1064
SsiI CCGC 3 cut(s) 525, 966, 969
SspI AATATT 3 cut(s) 199, 848, 855
SspMI CTAG 5 cut(s) 36, 111, 800, 821, 827
SstI GAGCTC 1 cut(s) 799
StyD4I CCNGG 5 cut(s) 227, 346, 418, 1009, 1103
TaaI ACNGT 5 cut(s) 71, 205, 643, 740, 1125
TaiI ACGT 3 cut(s) 30, 286, 514
TaqI TCGA 2 cut(s) 813, 1043
TasI AATT 3 cut(s) 51, 611, 1064
TatI WGTACW 2 cut(s) 96, 107
TauI GCSGC 1 cut(s) 969
TfiI GAWTC 1 cut(s) 840
Tru1I TTAA 4 cut(s) 449, 458, 858, 1062
Tru9I TTAA 4 cut(s) 449, 458, 858, 1062
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 1 cut(s) 604
VpaK11BI GGWCC 3 cut(s) 350, 522, 944
XapI RAATTY 1 cut(s) 611
XceI RCATGY 1 cut(s) 933
XspI CTAG 5 cut(s) 36, 111, 800, 821, 827
ZrmI AGTACT 2 cut(s) 98, 109
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.