RLG00000020119

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
61255585 .. 61261496
5912 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020119

Sequence Viewer

Length: 1167 bp
ATGTGGTTGCAAGAGCGGAAGGCAAAGGTGAGATCCGGGCCGAATGAGAATTGGCTGGTGCAGAAGCTCGATCTTGACCGCGAGGACGAGATGTTCGATTTGCAACACGGTATTCGCAAGATTCAGCGAAGAAGATGGAGCTTGGGTGTCCTGAGCAATTGCTTGGGTGTGAAGAGTAGTTTGCTCTTCATCGCGAATTGTCGGAGTTCGTCATGTCGTCTGCGATCGACGTACCGCAGGAGCCTATTCAATCCAATCAGCTTCCTTCTATATGGTCATCATGATCATCGTGGTGATCAGCACTCCGATAGTAGTAGAATAGAACACAATCATAATAAGTTTGCAAAGCTGCCTATGCTTTCACCATACCTGCAACCCGGTCAACATGATTTCACCGATGGATCTAACTTTGCTTCAGCTGGAGCTGGAGTTCTTGAAACGTCTGACTCTGAGATAAGTCTTCCCAAACAGTTAAGCCATTTTAAGAATGTGACAAAGTTGTTGCAGCAGAAATTGCGTGATTTAGAAGCCGAACGTCTGTTGAGGAACGCTGTTTACTTGATCAGTATTGGAGGGGTCGATTATTTTGAGTTCTTCTCTACATATTCAAATGCCACTGAGTCTCTCCAACGAGAACAAGTAGCAATTGTGATTGCTAACTTGACCATTGTGCTCAAAGAAATCTATAGCTTAGGAGGGAGGAAGATTGCATTTCAGAATGTGGGTTCTATTGGGTGCCTACCTAAATTTAGACAGTTATATGGTGTCAATGGAGGTTGTGTTGAACGACTTCTAAATTTGGCGAGGCTACACAATACAGCTCTAACTAAAGTCCTCGAACAGCTAGAGCTAGAGCTCTCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTATGGACCGATTTCATAACCCAACGAAATATGGGTACACAAATGGGTTGGACGCATGTTGTGGCATAGGACCATACCGAGGAATTGATTGCGGCGGAGATAATGGAACTGAACGATATGAACTATGCACAAACCCAGGCGACTATGTATGGTTTGACGGTGCCCATTCGACTGAGAGAGCAAACCTCCAATATGCAGAGCTAATATGGAGTGGCACACCAAATACCACCGGGCCTTACAATGTCAAACAGCTTTTTCAGCAAGTTTGA

Protein Analysis

389

Amino Acids

44.07

Weight (kDa)

8.47

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 121 - 368 1.1e-17 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 378
AccB1I GGYRCC 2 cut(s) 735, 1058
AccBSI CCGCTC 1 cut(s) 16
AccII CGCG 2 cut(s) 81, 194
AciI CCGC 5 cut(s) 16, 79, 235, 990, 993
AclWI GGATC 2 cut(s) 27, 409
AcsI RAATTY 2 cut(s) 746, 796
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 2 cut(s) 233, 935
AfiI CCNNNNNNNGG 1 cut(s) 977
AgsI TTSAA 6 cut(s) 250, 437, 609, 785, 868, 876
AjnI CCWGG 1 cut(s) 1033
AloI GAACNNNNNNTCC 4 cut(s) 77, 109, 414, 446
Alw21I GWGCWC 2 cut(s) 675, 858
Alw26I GTCTC 1 cut(s) 627
AlwI GGATC 2 cut(s) 27, 409
AoxI GGCC 2 cut(s) 38, 1130
ApeKI GCWGC 2 cut(s) 349, 505
ApoI RAATTY 2 cut(s) 746, 796
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 789
AspS9I GGNCC 4 cut(s) 38, 904, 968, 1130
AsuC2I CCSGG 3 cut(s) 37, 378, 1129
AsuHPI GGTGA 4 cut(s) 40, 305, 354, 385
AvaII GGWCC 2 cut(s) 904, 968
BaeGI GKGCMC 1 cut(s) 1063
BanI GGYRCC 2 cut(s) 735, 1058
BanII GRGCYC 1 cut(s) 858
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 2 cut(s) 675, 858
BbvI GCAGC 2 cut(s) 336, 517
BccI CCATC 2 cut(s) 129, 392
BciT130I CCWGG 1 cut(s) 1035
BclI TGATCA 3 cut(s) 283, 295, 561
BcnI CCSGG 3 cut(s) 37, 378, 1129
BcoDI GTCTC 1 cut(s) 627
BfaI CTAG 2 cut(s) 845, 851
BfmI CTRYAG 1 cut(s) 685
BfuAI ACCTGC 1 cut(s) 378
BisI GCNGC 3 cut(s) 350, 506, 991
BlsI GCNGC 3 cut(s) 351, 507, 992
Bme1390I CCNGG 4 cut(s) 37, 378, 1035, 1129
Bme18I GGWCC 2 cut(s) 904, 968
BmgT120I GGNCC 4 cut(s) 38, 904, 968, 1130
BmiI GGNNCC 3 cut(s) 242, 737, 1060
BmrFI CCNGG 4 cut(s) 37, 378, 1035, 1129
BmsI GCATC 1 cut(s) 883
BpiI GAAGAC 1 cut(s) 452
BplI GAGNNNNNCTC 4 cut(s) 581, 613, 1068, 1100
BpmI CTGGAG 2 cut(s) 441, 447
Bpu10I CCTNAGC 2 cut(s) 152, 691
BpuMI CCSGG 3 cut(s) 37, 378, 1129
BsaJI CCNNGG 2 cut(s) 976, 1033
BsaXI ACNNNNNCTCC 6 cut(s) 130, 160, 414, 444, 765, 795
Bsc4I CCNNNNNNNGG 1 cut(s) 977
BseBI CCWGG 1 cut(s) 1035
BseDI CCNNGG 2 cut(s) 976, 1033
BseLI CCNNNNNNNGG 1 cut(s) 977
BseMII CTCAG 5 cut(s) 143, 441, 609, 873, 1062
BseSI GKGCMC 1 cut(s) 1063
BseXI GCAGC 2 cut(s) 336, 517
BsgI GTGCAG 1 cut(s) 80
Bsh1236I CGCG 2 cut(s) 81, 194
Bsh1285I CGRYCG 1 cut(s) 227
BshFI GGCC 2 cut(s) 40, 1132
BshNI GGYRCC 2 cut(s) 735, 1058
BsiEI CGRYCG 1 cut(s) 227
BsiHKAI GWGCWC 2 cut(s) 675, 858
BsiSI CCGG 3 cut(s) 36, 378, 1128
BslI CCNNNNNNNGG 1 cut(s) 977
BsmAI GTCTC 1 cut(s) 627
BsnI GGCC 2 cut(s) 40, 1132
Bsp1286I GDGCHC 3 cut(s) 675, 858, 1063
Bsp143I GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
Bsp68I TCGCGA 1 cut(s) 194
BspACI CCGC 5 cut(s) 16, 79, 235, 990, 993
BspANI GGCC 2 cut(s) 40, 1132
BspCNI CTCAG 5 cut(s) 144, 442, 610, 872, 1063
BspFNI CGCG 2 cut(s) 81, 194
BspHI TCATGA 1 cut(s) 280
BspLI GGNNCC 3 cut(s) 242, 737, 1060
BspMI ACCTGC 1 cut(s) 378
BspPI GGATC 2 cut(s) 27, 409
BspQI GCTCTTC 1 cut(s) 191
BspT107I GGYRCC 2 cut(s) 735, 1058
BsrBI CCGCTC 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 976, 1033
BssMI GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
Bst2UI CCWGG 1 cut(s) 1035
Bst4CI ACNGT 4 cut(s) 110, 471, 756, 1058
Bst6I CTCTTC 2 cut(s) 167, 191
BstAPI GCANNNNNTGC 1 cut(s) 514
BstDEI CTNAG 6 cut(s) 152, 450, 618, 691, 859, 1071
BstFNI CGCG 2 cut(s) 81, 194
BstKTI GATC 7 cut(s) 35, 73, 227, 286, 298, 404, 564
BstMAI GTCTC 1 cut(s) 627
BstMBI GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
BstMCI CGRYCG 1 cut(s) 227
BstMWI GCNNNNNNNGC 3 cut(s) 355, 514, 1156
BstNI CCWGG 1 cut(s) 1035
BstNSI RCATGY 1 cut(s) 957
BstSCI CCNGG 4 cut(s) 35, 376, 1033, 1127
BstSFI CTRYAG 1 cut(s) 685
BstSLI GKGCMC 1 cut(s) 1063
BstUI CGCG 2 cut(s) 81, 194
BstV1I GCAGC 2 cut(s) 336, 517
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 2 cut(s) 32, 401
BstYI RGATCY 2 cut(s) 32, 401
BsuRI GGCC 2 cut(s) 40, 1132
BtgZI GCGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 615
BtuMI TCGCGA 1 cut(s) 194
BveI ACCTGC 1 cut(s) 378
CciI TCATGA 1 cut(s) 280
Cfr13I GGNCC 4 cut(s) 38, 904, 968, 1130
CseI GACGC 1 cut(s) 959
Csp6I GTAC 2 cut(s) 232, 934
CviAII CATG 4 cut(s) 213, 281, 386, 954
CviQI GTAC 2 cut(s) 232, 934
DdeI CTNAG 6 cut(s) 152, 450, 618, 691, 859, 1071
DpnI GATC 7 cut(s) 34, 72, 226, 285, 297, 403, 563
DpnII GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
Eam1104I CTCTTC 2 cut(s) 167, 191
EarI CTCTTC 2 cut(s) 167, 191
EciI GGCGGA 1 cut(s) 1008
Ecl136II GAGCTC 1 cut(s) 856
Eco24I GRGCYC 1 cut(s) 858
Eco47I GGWCC 2 cut(s) 904, 968
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 856
EcoRII CCWGG 1 cut(s) 1033
EcoT38I GRGCYC 1 cut(s) 858
FaeI CATG 4 cut(s) 216, 284, 389, 957
FatI CATG 4 cut(s) 212, 280, 385, 953
FbaI TGATCA 3 cut(s) 283, 295, 561
Fnu4HI GCNGC 3 cut(s) 350, 506, 991
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 350, 506, 991
FspBI CTAG 2 cut(s) 845, 851
GluI GCNGC 3 cut(s) 350, 506, 991
GsuI CTGGAG 2 cut(s) 441, 447
HaeIII GGCC 2 cut(s) 40, 1132
HapII CCGG 3 cut(s) 36, 378, 1128
HgaI GACGC 1 cut(s) 959
Hin1II CATG 4 cut(s) 216, 284, 389, 957
HincII GTYRAC 1 cut(s) 383
HindII GTYRAC 1 cut(s) 383
HinfI GANTC 4 cut(s) 121, 446, 620, 864
HpaII CCGG 3 cut(s) 36, 378, 1128
HphI GGTGA 4 cut(s) 40, 305, 354, 385
Hpy166II GTNNAC 3 cut(s) 383, 556, 936
Hpy188I TCNGA 5 cut(s) 204, 307, 445, 451, 717
Hpy188III TCNNGA 6 cut(s) 74, 151, 193, 281, 434, 861
Hpy8I GTNNAC 3 cut(s) 383, 556, 936
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 13, 275
HpyCH4III ACNGT 4 cut(s) 110, 471, 756, 1058
HpyCH4IV ACGT 3 cut(s) 230, 440, 535
HpyCH4V TGCA 9 cut(s) 10, 61, 103, 344, 373, 505, 710, 1026, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 355, 514, 1156
HpyF3I CTNAG 6 cut(s) 152, 450, 618, 691, 859, 1071
HpySE526I ACGT 3 cut(s) 230, 440, 535
Hsp92II CATG 4 cut(s) 216, 284, 389, 957
Ksp22I TGATCA 3 cut(s) 283, 295, 561
Kzo9I GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 3 cut(s) 138, 240, 422
Lsp1109I GCAGC 2 cut(s) 336, 517
LweI GCATC 1 cut(s) 883
MaeI CTAG 2 cut(s) 845, 851
MaeII ACGT 3 cut(s) 230, 440, 535
MaeIII GTNAC 1 cut(s) 490
MalI GATC 7 cut(s) 34, 72, 226, 285, 297, 403, 563
MbiI CCGCTC 1 cut(s) 16
MboI GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
MboII GAAGA 7 cut(s) 141, 144, 178, 184, 452, 586, 715
MfeI CAATTG 2 cut(s) 157, 645
MflI RGATCY 2 cut(s) 32, 401
MhlI GDGCHC 3 cut(s) 675, 858, 1063
MluCI AATT 8 cut(s) 49, 157, 196, 512, 645, 746, 796, 981
MlyI GAGTC 2 cut(s) 440, 629
MmeI TCCRAC 3 cut(s) 182, 652, 927
MroXI GAANNNNTTC 1 cut(s) 789
MseI TTAA 3 cut(s) 473, 483, 882
MslI CAYNNNNRTG 1 cut(s) 291
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 3 cut(s) 36, 378, 1128
MspR9I CCNGG 4 cut(s) 37, 378, 1035, 1129
MunI CAATTG 2 cut(s) 157, 645
MvaI CCWGG 1 cut(s) 1035
MvnI CGCG 2 cut(s) 81, 194
MwoI GCNNNNNNNGC 3 cut(s) 355, 514, 1156
NciI CCSGG 3 cut(s) 37, 378, 1129
NdeII GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
NlaIII CATG 4 cut(s) 216, 284, 389, 957
NlaIV GGNNCC 3 cut(s) 242, 737, 1060
NmuCI GTSAC 1 cut(s) 490
NruI TCGCGA 1 cut(s) 194
NspI RCATGY 1 cut(s) 957
PagI TCATGA 1 cut(s) 280
PciSI GCTCTTC 1 cut(s) 191
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 789
PfeI GAWTC 2 cut(s) 121, 864
PkrI GCNGC 3 cut(s) 351, 507, 992
Ple19I CGATCG 1 cut(s) 227
PleI GAGTC 2 cut(s) 440, 628
PpsI GAGTC 2 cut(s) 440, 628
Psp124BI GAGCTC 1 cut(s) 858
Psp6I CCWGG 1 cut(s) 1033
PspGI CCWGG 1 cut(s) 1033
PspN4I GGNNCC 3 cut(s) 242, 737, 1060
PspPI GGNCC 4 cut(s) 38, 904, 968, 1130
PsrI GAACNNNNNNTAC 2 cut(s) 539, 571
PsuI RGATCY 2 cut(s) 32, 401
PvuI CGATCG 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 419
RruI TCGCGA 1 cut(s) 194
RsaI GTAC 2 cut(s) 233, 935
RsaNI GTAC 2 cut(s) 232, 934
RseI CAYNNNNRTG 1 cut(s) 291
SacI GAGCTC 1 cut(s) 858
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 473, 483, 882
SatI GCNGC 3 cut(s) 350, 506, 991
Sau3AI GATC 7 cut(s) 32, 70, 224, 283, 295, 401, 561
Sau96I GGNCC 4 cut(s) 38, 904, 968, 1130
SchI GAGTC 2 cut(s) 440, 629
ScrFI CCNGG 4 cut(s) 37, 378, 1035, 1129
SduI GDGCHC 3 cut(s) 675, 858, 1063
SfaNI GCATC 1 cut(s) 883
SfcI CTRYAG 1 cut(s) 685
SinI GGWCC 2 cut(s) 904, 968
SmiMI CAYNNNNRTG 1 cut(s) 291
Sse9I AATT 8 cut(s) 49, 157, 196, 512, 645, 746, 796, 981
SsiI CCGC 5 cut(s) 16, 79, 235, 990, 993
SspI AATATT 2 cut(s) 872, 879
SspMI CTAG 2 cut(s) 845, 851
SstI GAGCTC 1 cut(s) 858
StyD4I CCNGG 4 cut(s) 35, 376, 1033, 1127
TaaI ACNGT 4 cut(s) 110, 471, 756, 1058
TaiI ACGT 3 cut(s) 233, 443, 538
TaqI TCGA 6 cut(s) 69, 96, 227, 579, 837, 1067
TaqII GACCGA 1 cut(s) 921
TasI AATT 8 cut(s) 49, 157, 196, 512, 645, 746, 796, 981
TauI GCSGC 1 cut(s) 993
TfiI GAWTC 2 cut(s) 121, 864
Tru1I TTAA 3 cut(s) 473, 483, 882
Tru9I TTAA 3 cut(s) 473, 483, 882
TscAI CASTG 1 cut(s) 622
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 349, 505
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 3 cut(s) 178, 902, 1032
TspRI CASTG 1 cut(s) 622
VpaK11BI GGWCC 2 cut(s) 904, 968
XapI RAATTY 2 cut(s) 746, 796
XceI RCATGY 1 cut(s) 957
XmnI GAANNNNTTC 1 cut(s) 789
XspI CTAG 2 cut(s) 845, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.