Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

62665693 .. 62667738

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGAACAAAGCTGCTGTTTCACGTTCTTGTTTGGCAACAATGTCTAAGTTTGGAAAACTGCCAATGCTTCCACCATATCTGCAACCTGGTCCACATGATTTTACTGATGGATCCAACTTTGCTTCAGGAGGAGCCGGAGTTCTTGAAACAACTAACCCAGGATCGTCAATAAGTCTTCCGACGCAGTTAAGCTATTTAAAAAATGTGGCAAAGTTGCTGGAGCTGAAGTTAGGTGATTTAGAAGCCAAACGTGTGCTGAGGACCGCTGTTTACTTGTTCAGCATCGGAGGGGTGGATGATATGGTCTTCTACTCTACATATCCAAATGCCACCGAGTCCCTGCGATCCGAATTCATAGCAAATGTGATTGGTAACTTGACCGTTGTGCTCAAAGAAATATACAACTTAGGAGGAAGGAAGATTGCATTTCAGAATGTAGGATCTCTTGGGTGCCAACCTATAAATAGACAATCATACGGTGCCATTGAAGGGTATGTTGAAGGACTTTTGACTTTGGCGAGGCTACACAATAGAGCTCTAGCTAATGTCCTCGAAGAACTAGAGCTAGAGCTATCGGGATTCAAATATTCAATATTTAACTACTATGATGCGCTTTTGGAACTATACCATAACCCTGCAAAACATGGGTTCACAAATGGGTCGGATGCATGTTGTGGTATAGGACCATACCGAGGAGATGATTGCGGCGGAGATAATGGAACCGAACCATATGAATTGTGCCCAAACCCAGGTGACTATGTGTGGTGGGATGGTGGCCATTCGACTGAAAGAGCAAACCTTAAATTGGCAGAGCTAATATGGAGTGGCACGCTAAATACTACCGGGCCTTACAATGTCAAACAGTTTTTTCAGCAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

293

Amino Acids

31.97

Weight (kDa)

5.43

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 273	4.6e-13	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	450, 479
AciI	CCGC	3 cut(s)	264, 705, 708
AclWI	GGATC	5 cut(s)	105, 118, 169, 339, 448
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	2 cut(s)	108, 245
AfiI	CCNNNNNNNGG	4 cut(s)	489, 692, 749, 805
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	5 cut(s)	146, 488, 500, 583, 591
AjnI	CCWGG	3 cut(s)	85, 157, 748
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	8 cut(s)	11, 192, 223, 536, 542, 565, 571, 814
AluI	AGCT	8 cut(s)	11, 192, 223, 536, 542, 565, 571, 814
Alw21I	GWGCWC	2 cut(s)	390, 538
AlwI	GGATC	5 cut(s)	105, 118, 169, 339, 448
AoxI	GGCC	2 cut(s)	775, 845
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	4 cut(s)	89, 261, 683, 845
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	2 cut(s)	245, 764
AvaII	GGWCC	3 cut(s)	89, 261, 683
BaeGI	GKGCMC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	2 cut(s)	450, 479
BanII	GRGCYC	1 cut(s)	538
BbsI	GAAGAC	2 cut(s)	167, 298
Bbv12I	GWGCWC	2 cut(s)	390, 538
BbvCI	CCTCAGC	1 cut(s)	257
BccI	CCATC	2 cut(s)	101, 764
BciT130I	CCWGG	3 cut(s)	87, 159, 750
BcnI	CCSGG	1 cut(s)	844
BfaI	CTAG	3 cut(s)	539, 560, 566
BisI	GCNGC	2 cut(s)	12, 706
BlsI	GCNGC	2 cut(s)	13, 707
Bme1390I	CCNGG	4 cut(s)	87, 159, 750, 844
Bme18I	GGWCC	3 cut(s)	89, 261, 683
BmgT120I	GGNCC	4 cut(s)	89, 261, 683, 845
BmiI	GGNNCC	5 cut(s)	112, 133, 452, 481, 721
BmrFI	CCNGG	4 cut(s)	87, 159, 750, 844
BmsI	GCATC	3 cut(s)	291, 598, 655
BpiI	GAAGAC	2 cut(s)	167, 298
BpmI	CTGGAG	1 cut(s)	239
Bpu10I	CCTNAGC	1 cut(s)	257
BpuMI	CCSGG	1 cut(s)	844
BsaJI	CCNNGG	3 cut(s)	157, 691, 748
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 212, 242
Bsc4I	CCNNNNNNNGG	4 cut(s)	489, 692, 749, 805
BseBI	CCWGG	3 cut(s)	87, 159, 750
BseDI	CCNNGG	3 cut(s)	157, 691, 748
BseGI	GGATG	3 cut(s)	301, 670, 775
BseLI	CCNNNNNNNGG	4 cut(s)	489, 692, 749, 805
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	2 cut(s)	144, 708
BseSI	GKGCMC	1 cut(s)	743
BshFI	GGCC	2 cut(s)	777, 847
BshNI	GGYRCC	2 cut(s)	450, 479
BsiHKAI	GWGCWC	2 cut(s)	390, 538
BsiSI	CCGG	2 cut(s)	135, 843
BslFI	GGGAC	1 cut(s)	322
BslI	CCNNNNNNNGG	4 cut(s)	489, 692, 749, 805
BsmFI	GGGAC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	777, 847
Bsp1286I	GDGCHC	3 cut(s)	390, 538, 743
Bsp143I	GATC	4 cut(s)	110, 161, 344, 440
BspACI	CCGC	3 cut(s)	264, 705, 708
BspANI	GGCC	2 cut(s)	777, 847
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	5 cut(s)	112, 133, 452, 481, 721
BspPI	GGATC	5 cut(s)	105, 118, 169, 339, 448
BspT107I	GGYRCC	2 cut(s)	450, 479
BssECI	CCNNGG	3 cut(s)	157, 691, 748
BssMI	GATC	4 cut(s)	110, 161, 344, 440
Bst2UI	CCWGG	3 cut(s)	87, 159, 750
Bst4CI	ACNGT	3 cut(s)	382, 479, 864
BstC8I	GCNNGC	1 cut(s)	830
BstDEI	CTNAG	3 cut(s)	45, 257, 406
BstF5I	GGATG	3 cut(s)	301, 670, 775
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	4 cut(s)	113, 164, 347, 443
BstMBI	GATC	4 cut(s)	110, 161, 344, 440
BstNI	CCWGG	3 cut(s)	87, 159, 750
BstNSI	RCATGY	1 cut(s)	672
BstSCI	CCNGG	4 cut(s)	85, 157, 748, 842
BstSLI	GKGCMC	1 cut(s)	743
BstV2I	GAAGAC	2 cut(s)	167, 298
BstX2I	RGATCY	2 cut(s)	110, 440
BstYI	RGATCY	2 cut(s)	110, 440
BsuRI	GGCC	2 cut(s)	777, 847
BtsCI	GGATG	3 cut(s)	301, 670, 775
Cac8I	GCNNGC	1 cut(s)	830
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	4 cut(s)	89, 261, 683, 845
CseI	GACGC	1 cut(s)	190
CsiI	ACCWGGT	1 cut(s)	85
CviAII	CATG	3 cut(s)	95, 644, 669
DdeI	CTNAG	3 cut(s)	45, 257, 406
DpnI	GATC	4 cut(s)	112, 163, 346, 442
DpnII	GATC	4 cut(s)	110, 161, 344, 440
DraI	TTTAAA	1 cut(s)	198
EaeI	YGGCCR	1 cut(s)	775
EciI	GGCGGA	1 cut(s)	723
Ecl136II	GAGCTC	1 cut(s)	536
Eco24I	GRGCYC	1 cut(s)	538
Eco47I	GGWCC	3 cut(s)	89, 261, 683
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	2 cut(s)	108, 245
EcoICRI	GAGCTC	1 cut(s)	536
EcoRI	GAATTC	1 cut(s)	350
EcoRII	CCWGG	3 cut(s)	85, 157, 748
EcoT22I	ATGCAT	1 cut(s)	670
EcoT38I	GRGCYC	1 cut(s)	538
FaeI	CATG	3 cut(s)	98, 647, 672
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	3 cut(s)	94, 643, 668
FauNDI	CATATG	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	12, 706
FokI	GGATG	3 cut(s)	308, 677, 782
FriOI	GRGCYC	1 cut(s)	538
Fsp4HI	GCNGC	2 cut(s)	12, 706
FspBI	CTAG	3 cut(s)	539, 560, 566
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	2 cut(s)	12, 706
GsuI	CTGGAG	1 cut(s)	239
HaeIII	GGCC	2 cut(s)	777, 847
HapII	CCGG	2 cut(s)	135, 843
HgaI	GACGC	1 cut(s)	190
HhaI	GCGC	1 cut(s)	613
Hin1II	CATG	3 cut(s)	98, 647, 672
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HinfI	GANTC	2 cut(s)	335, 579
HpaII	CCGG	2 cut(s)	135, 843
HphI	GGTGA	2 cut(s)	245, 764
Hpy166II	GTNNAC	3 cut(s)	92, 271, 651
Hpy188I	TCNGA	5 cut(s)	180, 287, 349, 432, 664
Hpy188III	TCNNGA	3 cut(s)	126, 143, 576
Hpy8I	GTNNAC	3 cut(s)	92, 271, 651
Hpy99I	CGWCG	1 cut(s)	184
HpyAV	CCTTC	3 cut(s)	408, 482, 494
HpyCH4III	ACNGT	3 cut(s)	382, 479, 864
HpyCH4IV	ACGT	2 cut(s)	22, 250
HpyCH4V	TGCA	4 cut(s)	82, 425, 638, 668
HpyF3I	CTNAG	3 cut(s)	45, 257, 406
HpySE526I	ACGT	2 cut(s)	22, 250
Hsp92II	CATG	3 cut(s)	98, 647, 672
HspAI	GCGC	1 cut(s)	611
Kzo9I	GATC	4 cut(s)	110, 161, 344, 440
LmnI	GCTCC	2 cut(s)	131, 220
LweI	GCATC	3 cut(s)	291, 598, 655
MabI	ACCWGGT	1 cut(s)	85
MaeI	CTAG	3 cut(s)	539, 560, 566
MaeII	ACGT	2 cut(s)	22, 250
MaeIII	GTNAC	2 cut(s)	371, 752
MalI	GATC	4 cut(s)	112, 163, 346, 442
MboI	GATC	4 cut(s)	110, 161, 344, 440
MboII	GAAGA	4 cut(s)	167, 298, 430, 566
MflI	RGATCY	2 cut(s)	110, 440
MhlI	GDGCHC	3 cut(s)	390, 538, 743
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	3 cut(s)	350, 734, 803
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	3 cut(s)	138, 203, 642
MnlI	CCTC	7 cut(s)	122, 252, 281, 404, 513, 560, 686
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	1 cut(s)	670
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	4 cut(s)	188, 197, 597, 801
Msp20I	TGGCCA	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	2 cut(s)	135, 843
MspR9I	CCNGG	4 cut(s)	87, 159, 750, 844
MvaI	CCWGG	3 cut(s)	87, 159, 750
NciI	CCSGG	1 cut(s)	844
NdeI	CATATG	1 cut(s)	730
NdeII	GATC	4 cut(s)	110, 161, 344, 440
NlaIII	CATG	3 cut(s)	98, 647, 672
NlaIV	GGNNCC	5 cut(s)	112, 133, 452, 481, 721
NmuCI	GTSAC	1 cut(s)	752
NsiI	ATGCAT	1 cut(s)	670
NspI	RCATGY	1 cut(s)	672
PfeI	GAWTC	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	13, 707
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	3 cut(s)	85, 157, 748
PspGI	CCWGG	3 cut(s)	85, 157, 748
PspN4I	GGNNCC	5 cut(s)	112, 133, 452, 481, 721
PspPI	GGNCC	4 cut(s)	89, 261, 683, 845
PsuI	RGATCY	2 cut(s)	110, 440
SacI	GAGCTC	1 cut(s)	538
SaqAI	TTAA	4 cut(s)	188, 197, 597, 801
SatI	GCNGC	2 cut(s)	12, 706
Sau3AI	GATC	4 cut(s)	110, 161, 344, 440
Sau96I	GGNCC	4 cut(s)	89, 261, 683, 845
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	4 cut(s)	87, 159, 750, 844
SduI	GDGCHC	3 cut(s)	390, 538, 743
SexAI	ACCWGGT	1 cut(s)	85
SfaNI	GCATC	3 cut(s)	291, 598, 655
SinI	GGWCC	3 cut(s)	89, 261, 683
Sse9I	AATT	3 cut(s)	350, 734, 803
SsiI	CCGC	3 cut(s)	264, 705, 708
SspI	AATATT	2 cut(s)	587, 594
SspMI	CTAG	3 cut(s)	539, 560, 566
SstI	GAGCTC	1 cut(s)	538
StyD4I	CCNGG	4 cut(s)	85, 157, 748, 842
TaaI	ACNGT	3 cut(s)	382, 479, 864
TaiI	ACGT	2 cut(s)	25, 253
TaqI	TCGA	2 cut(s)	552, 782
TasI	AATT	3 cut(s)	350, 734, 803
TauI	GCSGC	1 cut(s)	708
TfiI	GAWTC	1 cut(s)	579
Tru1I	TTAA	4 cut(s)	188, 197, 597, 801
Tru9I	TTAA	4 cut(s)	188, 197, 597, 801
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	17, 343, 747
VpaK11BI	GGWCC	3 cut(s)	89, 261, 683
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	1 cut(s)	672
XspI	CTAG	3 cut(s)	539, 560, 566
Zsp2I	ATGCAT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.