Rw2G037270

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
61398866 .. 61400635
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G037270.1

Sequence Viewer

Length: 1110 bp
ATGGCAAGTCTTGCTTACTGTGTTTTACTCCTTGTAACCGTTCTCAGTTTCAGCCCAGATAGCTGCTTCTGTGCTGCTCCCCAATCCAAACCAGAACAAAAGGCGGCCTTGTTTGTGTTTGGGGACTCGCTCTTTGATTCTGGGAACAACCAATACCTCAATAGTAGTAGCGGCATGGGAGCGGCAACAACTAAGCTGCCGTACGGAGAAACCTACTTCAAGCACGCCACTGGTCGGGTTTCCGATGGCCGCGTTGTCCCCGATTTTATTGCTCAGTTTGCAAAGCTTCCTATGCCACCACCATATCTGCAACCTGGTGCACATCACTTTACAGACGGGGTCAATTTTGCTTCTGCCGGAGCTGGTGTTCTTCCAGGAACTTTCCCCGGAGCGATAGACTTTCCTACTCAATTGAGCTATTTTAAGGCCATGGAGAAGACACTGAGACAGAGACTGGGTGGTAAGGAAACCAAGAAGTTGCTGGGCAGAGCTGTTTATTTGTTCAGCATTGGAGGAAATGACTACTTTAGCTACGCTTCTAAAAACCCAAAAGCTCTACAGATCTACAAGAGACAGTATGTAGCAATGGTGCTCAGAAACTTGATCAGTGTGCTCAAAGAAATATATAATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTAGGACCTCTGGGCTGCGTACCGGCAACGAAAGCAATGAATCCTGCACTCGGTAGTAAATGTTCTGAAGAACCATTAACACTAGCCAGACTCCATAACAGAGCCCTATTCATTGCCTTCAAGAAGTTAGAGAAGAGCTTACCAGGATTCAAATTCTCAATATTCGACTACTACAATGCACTTGGGGACAGAATCAACAACCCTTCAAAATATGGTTTCAAGGATGGAAAGGCTGCTTGTTGTGGCAGTGGGGCATATAGGGGGTCTAATTGTGGTGGTGGAAGGAATGGGACAGCATATGAACTATGCAGCAATCCCAGTGAGTATGTGTGGTTTGATGGAGCTCACACAACTGAAAGTGCCAACCACCAACTAGCTGAACTTATTTGGAATGGACCACAAAATATCACAGGGCCTTACACTGTGAAAAAACTATTTGATCTTGCTTAA

Protein Analysis

369

Amino Acids

40.06

Weight (kDa)

9.27

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 349 2e-28 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 182
AccII CGCG 1 cut(s) 252
AciI CCGC 4 cut(s) 104, 171, 182, 250
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 812
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 2 cut(s) 203, 681
AfiI CCNNNNNNNGG 2 cut(s) 234, 710
AgsI TTSAA 5 cut(s) 220, 781, 811, 867, 880
AjnI CCWGG 3 cut(s) 313, 373, 802
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
Alw21I GWGCWC 4 cut(s) 322, 594, 615, 1006
Alw26I GTCTC 3 cut(s) 439, 445, 565
Alw44I GTGCAC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 4 cut(s) 105, 247, 426, 1073
ApaLI GTGCAC 1 cut(s) 318
ApeKI GCWGC 6 cut(s) 63, 74, 196, 675, 893, 969
ApoI RAATTY 1 cut(s) 812
ArsI GACNNNNNNTTYG 2 cut(s) 116, 148
AspS9I GGNCC 3 cut(s) 665, 1055, 1073
AsuC2I CCSGG 1 cut(s) 387
AvaII GGWCC 2 cut(s) 665, 1055
BaeGI GKGCMC 1 cut(s) 322
BanII GRGCYC 2 cut(s) 766, 1006
BbsI GAAGAC 1 cut(s) 443
Bbv12I GWGCWC 4 cut(s) 322, 594, 615, 1006
BbvI GCAGC 6 cut(s) 50, 61, 183, 662, 880, 981
BccI CCATC 3 cut(s) 239, 878, 992
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 3 cut(s) 315, 375, 804
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 1 cut(s) 387
BcoDI GTCTC 3 cut(s) 439, 445, 565
BfaI CTAG 2 cut(s) 743, 1034
BfmI CTRYAG 1 cut(s) 557
BglII AGATCT 1 cut(s) 561
Bme1390I CCNGG 4 cut(s) 315, 375, 387, 804
Bme18I GGWCC 2 cut(s) 665, 1055
BmgT120I GGNCC 3 cut(s) 665, 1055, 1073
BmrFI CCNGG 4 cut(s) 315, 375, 387, 804
BmrI ACTGGG 2 cut(s) 464, 972
BmuI ACTGGG 2 cut(s) 464, 972
BpiI GAAGAC 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 387
BsaJI CCNNGG 2 cut(s) 385, 429
BsaXI ACNNNNNCTCC 2 cut(s) 351, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 710
Bse118I RCCGGY 1 cut(s) 682
Bse1I ACTGG 3 cut(s) 235, 459, 978
Bse3DI GCAATG 3 cut(s) 591, 702, 771
BseBI CCWGG 3 cut(s) 315, 375, 804
BseDI CCNNGG 2 cut(s) 385, 429
BseGI GGATG 1 cut(s) 889
BseLI CCNNNNNNNGG 2 cut(s) 234, 710
BseMI GCAATG 3 cut(s) 591, 702, 771
BseMII CTCAG 4 cut(s) 58, 287, 434, 607
BseNI ACTGG 3 cut(s) 235, 459, 978
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 6 cut(s) 50, 61, 183, 662, 880, 981
BseYI CCCAGC 1 cut(s) 481
BsgI GTGCAG 1 cut(s) 690
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 4 cut(s) 107, 249, 428, 1075
BsiHKAI GWGCWC 4 cut(s) 322, 594, 615, 1006
BsiSI CCGG 3 cut(s) 357, 387, 683
BsiWI CGTACG 1 cut(s) 201
BslFI GGGAC 4 cut(s) 137, 242, 860, 964
BslI CCNNNNNNNGG 2 cut(s) 234, 710
BsmAI GTCTC 3 cut(s) 439, 445, 565
BsmFI GGGAC 4 cut(s) 137, 242, 860, 964
BsnI GGCC 4 cut(s) 107, 249, 428, 1075
Bsp1286I GDGCHC 5 cut(s) 322, 594, 615, 766, 1006
Bsp143I GATC 3 cut(s) 561, 603, 1099
Bsp19I CCATGG 1 cut(s) 429
BspACI CCGC 4 cut(s) 104, 171, 182, 250
BspANI GGCC 4 cut(s) 107, 249, 428, 1075
BspCNI CTCAG 4 cut(s) 57, 286, 435, 606
BspFNI CGCG 1 cut(s) 252
BspQI GCTCTTC 1 cut(s) 788
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 3 cut(s) 591, 702, 771
BsrFI RCCGGY 1 cut(s) 682
BsrI ACTGG 3 cut(s) 235, 459, 978
BssAI RCCGGY 1 cut(s) 682
BssECI CCNNGG 2 cut(s) 385, 429
BssMI GATC 3 cut(s) 561, 603, 1099
BssT1I CCWWGG 1 cut(s) 429
Bst2UI CCWGG 3 cut(s) 315, 375, 804
Bst4CI ACNGT 4 cut(s) 20, 40, 576, 1084
Bst6I CTCTTC 1 cut(s) 788
BstAPI GCANNNNNTGC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 5 cut(s) 44, 192, 273, 443, 593
BstDSI CCRYGG 1 cut(s) 429
BstF5I GGATG 1 cut(s) 889
BstFNI CGCG 1 cut(s) 252
BstKTI GATC 3 cut(s) 564, 606, 1102
BstMAI GTCTC 3 cut(s) 439, 445, 565
BstMBI GATC 3 cut(s) 561, 603, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 11, 60, 278, 292, 692
BstNI CCWGG 3 cut(s) 315, 375, 804
BstSCI CCNGG 4 cut(s) 313, 373, 385, 802
BstSFI CTRYAG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 322
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 6 cut(s) 50, 61, 183, 662, 880, 981
BstV2I GAAGAC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 561
BstYI RGATCY 1 cut(s) 561
BsuRI GGCC 4 cut(s) 107, 249, 428, 1075
BtgI CCRYGG 1 cut(s) 429
BtsCI GGATG 1 cut(s) 889
BtsI GCAGTG 1 cut(s) 913
BtsIMutI CAGTG 6 cut(s) 228, 440, 613, 913, 985, 1080
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 682
Cfr13I GGNCC 3 cut(s) 665, 1055, 1073
CsiI ACCWGGT 1 cut(s) 313
Csp6I GTAC 2 cut(s) 202, 680
CviAII CATG 2 cut(s) 175, 430
CviQI GTAC 2 cut(s) 202, 680
DdeI CTNAG 5 cut(s) 44, 192, 273, 443, 593
DpnI GATC 3 cut(s) 563, 605, 1101
DpnII GATC 3 cut(s) 561, 603, 1099
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 788
EarI CTCTTC 1 cut(s) 788
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 1 cut(s) 429
Eco24I GRGCYC 2 cut(s) 766, 1006
Eco47I GGWCC 2 cut(s) 665, 1055
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 747
EcoICRI GAGCTC 1 cut(s) 1004
EcoO109I RGGNCCY 2 cut(s) 665, 1073
EcoRII CCWGG 3 cut(s) 313, 373, 802
EcoT14I CCWWGG 1 cut(s) 429
EcoT38I GRGCYC 2 cut(s) 766, 1006
ErhI CCWWGG 1 cut(s) 429
FaeI CATG 2 cut(s) 178, 433
FalI AAGNNNNNCTT 3 cut(s) 30, 92, 124
FaqI GGGAC 4 cut(s) 137, 242, 860, 964
FatI CATG 2 cut(s) 174, 429
FauNDI CATATG 1 cut(s) 958
FbaI TGATCA 1 cut(s) 603
FokI GGATG 1 cut(s) 896
FriOI GRGCYC 2 cut(s) 766, 1006
FspBI CTAG 2 cut(s) 743, 1034
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 4 cut(s) 107, 249, 428, 1075
HapII CCGG 3 cut(s) 357, 387, 683
Hin1II CATG 2 cut(s) 178, 433
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 6 cut(s) 125, 137, 700, 750, 807, 852
HpaII CCGG 3 cut(s) 357, 387, 683
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 4 cut(s) 244, 596, 657, 727
Hpy188III TCNNGA 1 cut(s) 781
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 633, 787, 873, 936
HpyCH4III ACNGT 4 cut(s) 20, 40, 576, 1084
HpyCH4V TGCA 7 cut(s) 281, 310, 320, 650, 707, 839, 969
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 60, 278, 292, 692
HpyF3I CTNAG 5 cut(s) 44, 192, 273, 443, 593
Hsp92II CATG 2 cut(s) 178, 433
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 3 cut(s) 561, 603, 1099
LguI GCTCTTC 1 cut(s) 788
LmnI GCTCC 5 cut(s) 82, 179, 359, 389, 1001
Lsp1109I GCAGC 6 cut(s) 50, 61, 183, 662, 880, 981
MabI ACCWGGT 1 cut(s) 313
MaeI CTAG 2 cut(s) 743, 1034
MaeIII GTNAC 1 cut(s) 34
MalI GATC 3 cut(s) 563, 605, 1101
MbiI CCGCTC 1 cut(s) 182
MboI GATC 3 cut(s) 561, 603, 1099
MboII GAAGA 4 cut(s) 362, 448, 740, 805
MfeI CAATTG 1 cut(s) 410
MflI RGATCY 1 cut(s) 561
MhlI GDGCHC 5 cut(s) 322, 594, 615, 766, 1006
MluCI AATT 6 cut(s) 343, 410, 628, 645, 812, 928
MlyI GAGTC 2 cut(s) 119, 744
MnlI CCTC 4 cut(s) 167, 506, 629, 678
MseI TTAA 3 cut(s) 423, 737, 1108
MspI CCGG 3 cut(s) 357, 387, 683
MspR9I CCNGG 4 cut(s) 315, 375, 387, 804
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 3 cut(s) 315, 375, 804
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 5 cut(s) 11, 60, 278, 292, 692
NciI CCSGG 1 cut(s) 387
NcoI CCATGG 1 cut(s) 429
NdeI CATATG 1 cut(s) 958
NdeII GATC 3 cut(s) 561, 603, 1099
NlaIII CATG 2 cut(s) 178, 433
PciSI GCTCTTC 1 cut(s) 788
PfeI GAWTC 4 cut(s) 137, 700, 807, 852
Pfl23II CGTACG 1 cut(s) 201
PflFI GACNNNGTC 1 cut(s) 338
PfoI TCCNGGA 1 cut(s) 373
PleI GAGTC 2 cut(s) 119, 744
PpsI GAGTC 2 cut(s) 119, 744
PpuMI RGGWCCY 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 1006
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 3 cut(s) 313, 373, 802
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 3 cut(s) 313, 373, 802
PspLI CGTACG 1 cut(s) 201
PspPI GGNCC 3 cut(s) 665, 1055, 1073
PspPPI RGGWCCY 1 cut(s) 665
PsrI GAACNNNNNNTAC 4 cut(s) 137, 169, 706, 738
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 338
RsaI GTAC 2 cut(s) 203, 681
RsaNI GTAC 2 cut(s) 202, 680
SacI GAGCTC 1 cut(s) 1006
SapI GCTCTTC 1 cut(s) 788
SaqAI TTAA 3 cut(s) 423, 737, 1108
Sau3AI GATC 3 cut(s) 561, 603, 1099
Sau96I GGNCC 3 cut(s) 665, 1055, 1073
SchI GAGTC 2 cut(s) 119, 744
ScrFI CCNGG 4 cut(s) 315, 375, 387, 804
SduI GDGCHC 5 cut(s) 322, 594, 615, 766, 1006
SexAI ACCWGGT 1 cut(s) 313
SfcI CTRYAG 1 cut(s) 557
SinI GGWCC 2 cut(s) 665, 1055
Sse9I AATT 6 cut(s) 343, 410, 628, 645, 812, 928
SsiI CCGC 4 cut(s) 104, 171, 182, 250
SspI AATATT 1 cut(s) 822
SspMI CTAG 2 cut(s) 743, 1034
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 4 cut(s) 313, 373, 385, 802
StyI CCWWGG 1 cut(s) 429
TaaI ACNGT 4 cut(s) 20, 40, 576, 1084
TaqI TCGA 1 cut(s) 825
TasI AATT 6 cut(s) 343, 410, 628, 645, 812, 928
TauI GCSGC 4 cut(s) 107, 174, 185, 252
TfiI GAWTC 4 cut(s) 137, 700, 807, 852
Tru1I TTAA 3 cut(s) 423, 737, 1108
Tru9I TTAA 3 cut(s) 423, 737, 1108
TscAI CASTG 6 cut(s) 235, 447, 613, 913, 985, 1087
TseI GCWGC 6 cut(s) 63, 74, 196, 675, 893, 969
TspDTI ATGAA 3 cut(s) 713, 760, 975
TspGWI ACGGA 1 cut(s) 219
TspRI CASTG 6 cut(s) 235, 447, 613, 913, 985, 1087
Tth111I GACNNNGTC 1 cut(s) 338
VneI GTGCAC 1 cut(s) 318
VpaK11BI GGWCC 2 cut(s) 665, 1055
XapI RAATTY 1 cut(s) 812
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 2 cut(s) 743, 1034
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.