Rw5G030220

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
47772502 .. 47779577
7076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030220.1

Sequence Viewer

Length: 1119 bp
ATGGCAAGTCTTAGCTACATTGTTTATGTGTTGGCAAGCCTACTCAACCCAGTTAGCTTCCTTCTTTATGATCATCATAGTCGGTATACTGGTGGTAGTAATAGTAGTATAGAACATGATGATCAATATAAGGTGGCATTGTTTGTGTTCGGAGACTCGCTATTTGAGGCTGTAGTGAATGGGTACCTTCCCAATATTACCACAGAGCTAGACCCAGCAATAGCCTGGCCATATGGAGAAACCTTCTTCCACTATCCGACCGGAAGATTCTCCGACGGACGCATAGTCCCCGATTTCATCGCTAAGTACGCAAAGCTGCCCATGCTTCCACCTTACCTGCAACCAGGTCCACATGATTTTACCGATGGATGCAACTTTGCTTCGTCTGGAGCCGGGGTTCTTGTTGAAACTAATCCAGGAAAATCGATAAGTCTTCCAGCACAGTTGGGCTTCTTCAGAGATGTCAGAAAGTCGCTACAACAGAAATTGGGTGGTCTAAAAACCAAACGCGTGCTCAGGGAAGCTGTTTACTTGATTGGCATCGGAGGGGATGATTATTTTCACTTCTACAGCGACTTTCCAAATGCCACCGAGTCCCTTCAACTCGAAGCCGTAGCAGTTGAAATATATGATTTAGGAGGAAGGAAGTTTGCATTTCAAAATGCAGGACCGCTTGGATGCATACCTTATAGGAGACAAATTTACAATACTAAGGAAGGATGCGTTGAAGGACTCAATAGTCTGGCTAGTCTACATAACACAGCTCTAGTTTCTGTCCTTAGAGAGTTCGAGAGCCAACTATTAGGATTCAAATATTCAATATTTGATTACTATAATTCACTTGATGATCGACTCCGTAACCCTGCCAAATATGGGTTCACAAATGCGACAGATGCATGTTGTGGTACAGGGCTGTTCAGAGCAGCTTATTGTGGTGGAGATAATGGAACAAAACCATATGAACTATGCAATGACGTTGGAGATTATTTGTGGTTTGATGGTAGCCATACGACTGAAATTGCAAACTTTCCAATGGCAGAGCTGATGTGGAGTGGAACACCCAATGTCACAGGGCCTTACAATGTCAAACAACTTTTCCAACAAGTTTCAGCTTATTAA

Protein Analysis

372

Amino Acids

41.28

Weight (kDa)

5.27

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 347 4e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 738
Acc36I ACCTGC 1 cut(s) 345
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 183
AccI GTMKAC 2 cut(s) 86, 751
AccII CGCG 1 cut(s) 510
AciI CCGC 1 cut(s) 671
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 1 cut(s) 439
AfaI GTAC 3 cut(s) 185, 308, 907
AfiI CCNNNNNNNGG 1 cut(s) 873
AflIII ACRYGT 1 cut(s) 508
AgsI TTSAA 7 cut(s) 407, 602, 623, 659, 728, 811, 819
AhdI GACNNNNNGTC 1 cut(s) 284
AjnI CCWGG 3 cut(s) 224, 343, 415
AjuI GAANNNNNNNTTGG 2 cut(s) 860, 892
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 9 cut(s) 15, 57, 208, 316, 524, 764, 926, 1042, 1112
AluI AGCT 9 cut(s) 15, 57, 208, 316, 524, 764, 926, 1042, 1112
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 2 cut(s) 147, 688
AoxI GGCC 2 cut(s) 227, 1073
ApeKI GCWGC 2 cut(s) 316, 923
ApoI RAATTY 1 cut(s) 699
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp718I GGTACC 1 cut(s) 183
AspS9I GGNCC 3 cut(s) 347, 668, 1073
AsuC2I CCSGG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 347, 668
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 516
BbvI GCAGC 2 cut(s) 303, 935
BccI CCATC 2 cut(s) 359, 992
BceAI ACGGC 1 cut(s) 596
BciT130I CCWGG 3 cut(s) 226, 345, 417
BclI TGATCA 2 cut(s) 70, 121
BcnI CCSGG 1 cut(s) 394
BcoDI GTCTC 2 cut(s) 147, 688
BfaI CTAG 3 cut(s) 209, 747, 767
BfmI CTRYAG 2 cut(s) 171, 568
BfuAI ACCTGC 1 cut(s) 345
BisI GCNGC 2 cut(s) 317, 924
BlsI GCNGC 2 cut(s) 318, 925
Bme1390I CCNGG 4 cut(s) 226, 345, 394, 417
Bme18I GGWCC 2 cut(s) 347, 668
BmeRI GACNNNNNGTC 1 cut(s) 284
BmgT120I GGNCC 3 cut(s) 347, 668, 1073
BmiI GGNNCC 2 cut(s) 185, 391
BmrFI CCNGG 4 cut(s) 226, 345, 394, 417
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 5 cut(s) 359, 549, 668, 710, 883
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 394
Bsa29I ATCGAT 1 cut(s) 425
BsaBI GATNNNNATC 1 cut(s) 539
BsaJI CCNNGG 1 cut(s) 393
BsaWI WCCGGW 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 873
Bse1I ACTGG 2 cut(s) 50, 94
Bse3DI GCAATG 1 cut(s) 976
Bse8I GATNNNNATC 1 cut(s) 539
BseBI CCWGG 3 cut(s) 226, 345, 417
BseCI ATCGAT 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 393
BseGI GGATG 4 cut(s) 374, 556, 683, 725
BseJI GATNNNNATC 1 cut(s) 539
BseLI CCNNNNNNNGG 1 cut(s) 873
BseMI GCAATG 1 cut(s) 976
BseMII CTCAG 1 cut(s) 529
BseNI ACTGG 2 cut(s) 50, 94
BseXI GCAGC 2 cut(s) 303, 935
BseYI CCCAGC 1 cut(s) 214
Bsh1236I CGCG 1 cut(s) 510
Bsh1285I CGRYCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 229, 1075
BshNI GGYRCC 1 cut(s) 183
BshVI ATCGAT 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 261
BsiHKAI GWGCWC 1 cut(s) 516
BsiSI CCGG 2 cut(s) 261, 393
BslFI GGGAC 2 cut(s) 272, 580
BslI CCNNNNNNNGG 1 cut(s) 873
BsmAI GTCTC 2 cut(s) 147, 688
BsmFI GGGAC 2 cut(s) 272, 580
BsnI GGCC 2 cut(s) 229, 1075
Bsp1286I GDGCHC 1 cut(s) 516
Bsp143I GATC 3 cut(s) 70, 121, 847
BspACI CCGC 1 cut(s) 671
BspANI GGCC 2 cut(s) 229, 1075
BspCNI CTCAG 1 cut(s) 528
BspDI ATCGAT 1 cut(s) 425
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 185, 391
BspMI ACCTGC 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 976
BsrI ACTGG 2 cut(s) 50, 94
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 70, 121, 847
BssNAI GTATAC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 87
Bst2UI CCWGG 3 cut(s) 226, 345, 417
Bst4CI ACNGT 1 cut(s) 444
BstC8I GCNNGC 2 cut(s) 37, 512
BstDEI CTNAG 5 cut(s) 11, 303, 515, 711, 779
BstF5I GGATG 4 cut(s) 374, 556, 683, 725
BstFNI CGCG 1 cut(s) 510
BstKTI GATC 3 cut(s) 73, 124, 850
BstMAI GTCTC 2 cut(s) 147, 688
BstMBI GATC 3 cut(s) 70, 121, 847
BstMCI CGRYCG 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 308, 322, 893
BstNI CCWGG 3 cut(s) 226, 345, 417
BstNSI RCATGY 1 cut(s) 900
BstSCI CCNGG 4 cut(s) 224, 343, 392, 415
BstSFI CTRYAG 2 cut(s) 171, 568
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 2 cut(s) 303, 935
BstV2I GAAGAC 1 cut(s) 425
BstZ17I GTATAC 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 425
BsuRI GGCC 2 cut(s) 229, 1075
BsuTUI ATCGAT 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 283
BtsCI GGATG 4 cut(s) 374, 556, 683, 725
BveI ACCTGC 1 cut(s) 345
Cac8I GCNNGC 2 cut(s) 37, 512
Cfr13I GGNCC 3 cut(s) 347, 668, 1073
ClaI ATCGAT 1 cut(s) 425
CseI GACGC 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 343
Csp6I GTAC 3 cut(s) 184, 307, 906
CviAII CATG 4 cut(s) 116, 322, 353, 897
CviQI GTAC 3 cut(s) 184, 307, 906
DdeI CTNAG 5 cut(s) 11, 303, 515, 711, 779
DpnI GATC 3 cut(s) 72, 123, 849
DpnII GATC 3 cut(s) 70, 121, 847
DrdI GACNNNNNNGTC 1 cut(s) 738
DriI GACNNNNNGTC 1 cut(s) 284
DseDI GACNNNNNNGTC 1 cut(s) 738
EaeI YGGCCR 1 cut(s) 227
Eam1105I GACNNNNNGTC 1 cut(s) 284
Eco47I GGWCC 2 cut(s) 347, 668
Eco57I CTGAAG 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRII CCWGG 3 cut(s) 224, 343, 415
EcoT22I ATGCAT 2 cut(s) 683, 898
FaeI CATG 4 cut(s) 119, 325, 356, 900
FaqI GGGAC 2 cut(s) 272, 580
FatI CATG 4 cut(s) 115, 321, 352, 896
FauNDI CATATG 2 cut(s) 232, 958
FbaI TGATCA 2 cut(s) 70, 121
FblI GTMKAC 2 cut(s) 86, 751
Fnu4HI GCNGC 2 cut(s) 317, 924
FokI GGATG 4 cut(s) 381, 563, 690, 732
Fsp4HI GCNGC 2 cut(s) 317, 924
FspBI CTAG 3 cut(s) 209, 747, 767
GluI GCNGC 2 cut(s) 317, 924
GsaI CCCAGC 1 cut(s) 218
GsuI CTGGAG 1 cut(s) 408
HaeIII GGCC 2 cut(s) 229, 1075
HapII CCGG 2 cut(s) 261, 393
HgaI GACGC 1 cut(s) 288
Hin1II CATG 4 cut(s) 119, 325, 356, 900
HinfI GANTC 6 cut(s) 155, 267, 593, 732, 807, 852
HpaII CCGG 2 cut(s) 261, 393
Hpy166II GTNNAC 5 cut(s) 87, 350, 529, 752, 879
Hpy188I TCNGA 7 cut(s) 152, 258, 274, 458, 467, 545, 920
Hpy188III TCNNGA 2 cut(s) 387, 790
Hpy8I GTNNAC 5 cut(s) 87, 350, 529, 752, 879
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 7 cut(s) 71, 197, 253, 608, 636, 710, 722
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 975
HpyCH4V TGCA 8 cut(s) 340, 372, 653, 665, 681, 896, 969, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 322, 893
HpyF3I CTNAG 5 cut(s) 11, 303, 515, 711, 779
HpySE526I ACGT 1 cut(s) 975
Hsp92II CATG 4 cut(s) 119, 325, 356, 900
KpnI GGTACC 1 cut(s) 187
Ksp22I TGATCA 2 cut(s) 70, 121
Kzo9I GATC 3 cut(s) 70, 121, 847
LmnI GCTCC 1 cut(s) 389
Lsp1109I GCAGC 2 cut(s) 303, 935
LweI GCATC 5 cut(s) 359, 549, 668, 710, 883
MabI ACCWGGT 1 cut(s) 343
MaeI CTAG 3 cut(s) 209, 747, 767
MaeII ACGT 1 cut(s) 975
MaeIII GTNAC 2 cut(s) 857, 1066
MalI GATC 3 cut(s) 72, 123, 849
MboI GATC 3 cut(s) 70, 121, 847
MboII GAAGA 4 cut(s) 238, 276, 425, 445
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 4 cut(s) 485, 699, 835, 1017
MluI ACGCGT 1 cut(s) 508
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 4 cut(s) 149, 602, 726, 846
MmeI TCCRAC 3 cut(s) 281, 297, 958
MnlI CCTC 3 cut(s) 160, 539, 632
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 2 cut(s) 683, 898
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 1117
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 2 cut(s) 261, 393
MspR9I CCNGG 4 cut(s) 226, 345, 394, 417
MvaI CCWGG 3 cut(s) 226, 345, 417
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 3 cut(s) 308, 322, 893
NciI CCSGG 1 cut(s) 394
NdeI CATATG 2 cut(s) 232, 958
NdeII GATC 3 cut(s) 70, 121, 847
NlaIII CATG 4 cut(s) 119, 325, 356, 900
NlaIV GGNNCC 2 cut(s) 185, 391
NmuCI GTSAC 1 cut(s) 1066
NsiI ATGCAT 2 cut(s) 683, 898
NspI RCATGY 1 cut(s) 900
PfeI GAWTC 2 cut(s) 267, 807
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 2 cut(s) 318, 925
PleI GAGTC 4 cut(s) 149, 601, 726, 846
PpsI GAGTC 4 cut(s) 149, 601, 726, 846
Psp6I CCWGG 3 cut(s) 224, 343, 415
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 3 cut(s) 224, 343, 415
PspN4I GGNNCC 2 cut(s) 185, 391
PspPI GGNCC 3 cut(s) 347, 668, 1073
RsaI GTAC 3 cut(s) 185, 308, 907
RsaNI GTAC 3 cut(s) 184, 307, 906
SaqAI TTAA 1 cut(s) 1117
SatI GCNGC 2 cut(s) 317, 924
Sau3AI GATC 3 cut(s) 70, 121, 847
Sau96I GGNCC 3 cut(s) 347, 668, 1073
SchI GAGTC 4 cut(s) 149, 602, 726, 846
ScrFI CCNGG 4 cut(s) 226, 345, 394, 417
SduI GDGCHC 1 cut(s) 516
SexAI ACCWGGT 1 cut(s) 343
SfaNI GCATC 5 cut(s) 359, 549, 668, 710, 883
SfcI CTRYAG 2 cut(s) 171, 568
SinI GGWCC 2 cut(s) 347, 668
Sse9I AATT 4 cut(s) 485, 699, 835, 1017
SsiI CCGC 1 cut(s) 671
SspI AATATT 3 cut(s) 196, 815, 822
SspMI CTAG 3 cut(s) 209, 747, 767
StyD4I CCNGG 4 cut(s) 224, 343, 392, 415
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 978
TaqI TCGA 4 cut(s) 425, 606, 789, 850
TasI AATT 4 cut(s) 485, 699, 835, 1017
TfiI GAWTC 2 cut(s) 267, 807
Tru1I TTAA 1 cut(s) 1117
Tru9I TTAA 1 cut(s) 1117
TseFI GTSAC 1 cut(s) 1066
TseI GCWGC 2 cut(s) 316, 923
Tsp45I GTSAC 1 cut(s) 1066
TspDTI ATGAA 2 cut(s) 286, 975
TspGWI ACGGA 2 cut(s) 291, 845
VpaK11BI GGWCC 2 cut(s) 347, 668
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmiI GTMKAC 2 cut(s) 86, 751
XspI CTAG 3 cut(s) 209, 747, 767
Zsp2I ATGCAT 2 cut(s) 683, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.