FvH4_6g35500

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27992420 .. 27994761
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35500.t1

Sequence Viewer

Length: 1122 bp
ATGGCAAGTCTTGGTTACCCTGCTTACTGTGTTTTACTACTTGTAACTGTTCTTAGTTTCAGCCCAGATAGTTGCTTCTGTGCTGCTCATCACCAATCCAAACCACAACACAAGGCGGCCTTGTTTGTGTTTGGAGACTCACTTTTTGATTCTGGGAACAACCAATACCTCAATGGGAGTAGCGGCATGGGAGCAGGACCAACTAGGCTGCCGTACGGTGAAACCTACTTCAAGCACGCCACCGGTAGAGTTTCCGATGGTCGCATTGTACCCGATTTTATTGCTCAGTTTGCAAAGCTTCCTATGCCACCACCATATCTGCAACCTGGTGCGCATAACTTTACAGATGGGGTCAATTTTGCTTCTGCTGGAGCTGGTGTTCTTCCCGGAACTTTCCCCGGAGCGATAGACTTCCCAACTCAATTGAGCTACTTTAAGGCCATGGAGAAGTCACTGAGCCAGAGACTGGGTGCTAAGGAAACCAAGAAGTTGCTGGGCAGAGCTGTGTATTTGTTCAGCATTGGAGGAAATGACTACTTCAGCTACGCTTCTAAAAACCCTAAAGCTCTACAGATCTACAAGAGACAGTATGTAGCAATGGTGATCAGAAACATGACCAGTGTGCTCAAAGAAATCTATGATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTAGGACCTCTGGGATGCGTACCGGCAACAAAGGCAATGAATCCTGCACTTGGTAGTAAGTGTTCTGAAGAACCATTAACACTAGCCAGACTCCACAACCGAGTTCTATTCAGTAATTTCAAGAAGTTAGAGAAGAGCTTACCCGGATTCAAATTCTCAATATTTGACTACTACAATGCACTTGGGGACAGAATCAACAACCCTTCAAAATATGGTTTCAAGGATGGAAAGGCTGCTTGTTGTGGAAGTGGAGCATACAGGGGGTCTAATTGTGGTGGTGGAAAGAATGGGACAGCATATAAACTGTGCAGCAATCCTAATGAGTACGTGTGGTTTGATGGAGCTCATACAACCGAAAGTGCCAACCACCAGCTAGCTCAACTTATATGGAATGGACCACAAAATTTCACAGGGCCTTACACTGTGAAACAACTATTTGAGCTTGCTTGA

Protein Analysis

374

Amino Acids

40.56

Weight (kDa)

9.32

Isoelectric Point (pI)

25.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 41 - 353 5.8e-29 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 466
AciI CCGC 2 cut(s) 116, 183
AcsI RAATTY 2 cut(s) 824, 1075
AcuI CTGAAG 2 cut(s) 523, 759
AfaI GTAC 4 cut(s) 215, 270, 693, 998
AfiI CCNNNNNNNGG 2 cut(s) 466, 722
AflIII ACRYGT 1 cut(s) 999
AgeI ACCGGT 1 cut(s) 242
AgsI TTSAA 5 cut(s) 232, 793, 823, 879, 892
AjnI CCWGG 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
Alw21I GWGCWC 2 cut(s) 627, 1018
Alw26I GTCTC 3 cut(s) 129, 457, 577
AlwNI CAGNNNCTG 1 cut(s) 466
AoxI GGCC 3 cut(s) 117, 438, 1085
ApeKI GCWGC 4 cut(s) 83, 208, 905, 981
ApoI RAATTY 2 cut(s) 824, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
AsiGI ACCGGT 1 cut(s) 242
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 4 cut(s) 197, 677, 1067, 1085
AsuC2I CCSGG 3 cut(s) 387, 399, 816
AsuHPI GGTGA 3 cut(s) 83, 230, 613
AsuNHI GCTAGC 1 cut(s) 1045
AvaII GGWCC 3 cut(s) 197, 677, 1067
BanII GRGCYC 1 cut(s) 1018
Bbv12I GWGCWC 2 cut(s) 627, 1018
BbvI GCAGC 4 cut(s) 70, 195, 892, 993
BccI CCATC 4 cut(s) 251, 341, 890, 1004
BceAI ACGGC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 603
BcnI CCSGG 3 cut(s) 387, 399, 816
BcoDI GTCTC 3 cut(s) 129, 457, 577
BfaI CTAG 3 cut(s) 204, 755, 1046
BfmI CTRYAG 1 cut(s) 569
BglII AGATCT 1 cut(s) 573
BisI GCNGC 6 cut(s) 84, 117, 184, 209, 906, 982
BlsI GCNGC 6 cut(s) 85, 118, 185, 210, 907, 983
Bme1390I CCNGG 4 cut(s) 327, 387, 399, 816
Bme18I GGWCC 3 cut(s) 197, 677, 1067
BmgT120I GGNCC 4 cut(s) 197, 677, 1067, 1085
BmrFI CCNGG 4 cut(s) 327, 387, 399, 816
BmrI ACTGGG 1 cut(s) 476
BmsI GCATC 1 cut(s) 677
BmtI GCTAGC 1 cut(s) 1049
BmuI ACTGGG 1 cut(s) 476
BpmI CTGGAG 1 cut(s) 390
Bpu10I CCTNAGC 1 cut(s) 474
BpuMI CCSGG 3 cut(s) 387, 399, 816
BsaAI YACGTR 1 cut(s) 1000
BsaJI CCNNGG 2 cut(s) 397, 441
BsaWI WCCGGW 1 cut(s) 242
BsaXI ACNNNNNCTCC 2 cut(s) 363, 393
Bsc4I CCNNNNNNNGG 2 cut(s) 466, 722
Bse118I RCCGGY 2 cut(s) 242, 694
Bse1I ACTGG 2 cut(s) 471, 618
Bse3DI GCAATG 2 cut(s) 603, 714
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 397, 441
BseGI GGATG 2 cut(s) 692, 901
BseLI CCNNNNNNNGG 2 cut(s) 466, 722
BseMI GCAATG 2 cut(s) 603, 714
BseMII CTCAG 2 cut(s) 299, 446
BseNI ACTGG 2 cut(s) 471, 618
BseXI GCAGC 4 cut(s) 70, 195, 892, 993
BseYI CCCAGC 1 cut(s) 493
BsgI GTGCAG 2 cut(s) 702, 1000
BshFI GGCC 3 cut(s) 119, 440, 1087
BshTI ACCGGT 1 cut(s) 242
BsiHKAI GWGCWC 2 cut(s) 627, 1018
BsiSI CCGG 5 cut(s) 243, 387, 399, 695, 816
BsiWI CGTACG 1 cut(s) 213
BslFI GGGAC 2 cut(s) 872, 976
BslI CCNNNNNNNGG 2 cut(s) 466, 722
BsmAI GTCTC 3 cut(s) 129, 457, 577
BsmFI GGGAC 2 cut(s) 872, 976
BsnI GGCC 3 cut(s) 119, 440, 1087
Bsp1286I GDGCHC 2 cut(s) 627, 1018
Bsp143I GATC 2 cut(s) 573, 603
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 116, 183
BspANI GGCC 3 cut(s) 119, 440, 1087
BspCNI CTCAG 2 cut(s) 298, 447
BspOI GCTAGC 1 cut(s) 1049
BspQI GCTCTTC 1 cut(s) 800
BsrDI GCAATG 2 cut(s) 603, 714
BsrFI RCCGGY 2 cut(s) 242, 694
BsrI ACTGG 2 cut(s) 471, 618
BssAI RCCGGY 2 cut(s) 242, 694
BssECI CCNNGG 2 cut(s) 397, 441
BssMI GATC 2 cut(s) 573, 603
BssT1I CCWWGG 1 cut(s) 441
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 6 cut(s) 29, 49, 218, 588, 978, 1096
Bst6I CTCTTC 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 1000
BstC8I GCNNGC 3 cut(s) 237, 1047, 1116
BstDEI CTNAG 4 cut(s) 53, 285, 455, 474
BstDSI CCRYGG 1 cut(s) 441
BstEII GGTNACC 1 cut(s) 14
BstF5I GGATG 2 cut(s) 692, 901
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 576, 606
BstMAI GTCTC 3 cut(s) 129, 457, 577
BstMBI GATC 2 cut(s) 573, 603
BstMWI GCNNNNNNNGC 3 cut(s) 290, 304, 704
BstNI CCWGG 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 14
BstSCI CCNGG 4 cut(s) 325, 385, 397, 814
BstSFI CTRYAG 1 cut(s) 569
BstV1I GCAGC 4 cut(s) 70, 195, 892, 993
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BsuRI GGCC 3 cut(s) 119, 440, 1087
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 2 cut(s) 692, 901
BtsIMutI CAGTG 3 cut(s) 452, 625, 1092
Cac8I GCNNGC 3 cut(s) 237, 1047, 1116
CaiI CAGNNNCTG 1 cut(s) 466
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 242, 694
Cfr13I GGNCC 4 cut(s) 197, 677, 1067, 1085
CsiI ACCWGGT 1 cut(s) 325
Csp6I GTAC 4 cut(s) 214, 269, 692, 997
CspAI ACCGGT 1 cut(s) 242
CviAII CATG 3 cut(s) 187, 442, 613
CviQI GTAC 4 cut(s) 214, 269, 692, 997
DdeI CTNAG 4 cut(s) 53, 285, 455, 474
DpnI GATC 2 cut(s) 575, 605
DpnII GATC 2 cut(s) 573, 603
Eam1104I CTCTTC 1 cut(s) 800
EarI CTCTTC 1 cut(s) 800
Ecl136II GAGCTC 1 cut(s) 1016
Eco130I CCWWGG 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 1018
Eco47I GGWCC 3 cut(s) 197, 677, 1067
Eco53kI GAGCTC 1 cut(s) 1016
Eco57I CTGAAG 2 cut(s) 523, 759
Eco91I GGTNACC 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 1016
EcoO109I RGGNCCY 2 cut(s) 677, 1085
EcoO65I GGTNACC 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 441
EcoT38I GRGCYC 1 cut(s) 1018
ErhI CCWWGG 1 cut(s) 441
FaeI CATG 3 cut(s) 190, 445, 616
FalI AAGNNNNNCTT 2 cut(s) 104, 136
FaqI GGGAC 2 cut(s) 872, 976
FatI CATG 3 cut(s) 186, 441, 612
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 6 cut(s) 84, 117, 184, 209, 906, 982
FokI GGATG 2 cut(s) 699, 908
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 6 cut(s) 84, 117, 184, 209, 906, 982
FspAI RTGCGCAY 1 cut(s) 333
FspBI CTAG 3 cut(s) 204, 755, 1046
FspI TGCGCA 1 cut(s) 333
GlaI GCGC 1 cut(s) 333
GluI GCNGC 6 cut(s) 84, 117, 184, 209, 906, 982
GsaI CCCAGC 1 cut(s) 497
GsuI CTGGAG 1 cut(s) 390
HaeIII GGCC 3 cut(s) 119, 440, 1087
HapII CCGG 5 cut(s) 243, 387, 399, 695, 816
HhaI GCGC 1 cut(s) 334
Hin1II CATG 3 cut(s) 190, 445, 616
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 296
HinfI GANTC 6 cut(s) 137, 149, 712, 762, 819, 864
HpaII CCGG 5 cut(s) 243, 387, 399, 695, 816
HphI GGTGA 3 cut(s) 83, 230, 613
Hpy188I TCNGA 4 cut(s) 256, 608, 669, 739
Hpy188III TCNNGA 1 cut(s) 793
HpyAV CCTTC 2 cut(s) 645, 885
HpyCH4III ACNGT 6 cut(s) 29, 49, 218, 588, 978, 1096
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 6 cut(s) 293, 322, 662, 719, 851, 981
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 304, 704
HpyF3I CTNAG 4 cut(s) 53, 285, 455, 474
HpySE526I ACGT 1 cut(s) 999
Hsp92II CATG 3 cut(s) 190, 445, 616
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 2 cut(s) 573, 603
LguI GCTCTTC 1 cut(s) 800
LmnI GCTCC 5 cut(s) 191, 371, 401, 923, 1013
Lsp1109I GCAGC 4 cut(s) 70, 195, 892, 993
LweI GCATC 1 cut(s) 677
MabI ACCWGGT 1 cut(s) 325
MaeI CTAG 3 cut(s) 204, 755, 1046
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 3 cut(s) 14, 43, 450
MalI GATC 2 cut(s) 575, 605
MboI GATC 2 cut(s) 573, 603
MboII GAAGA 3 cut(s) 374, 752, 817
MfeI CAATTG 1 cut(s) 422
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 2 cut(s) 627, 1018
MluCI AATT 7 cut(s) 355, 422, 657, 787, 824, 940, 1075
MlyI GAGTC 2 cut(s) 131, 756
MnlI CCTC 4 cut(s) 179, 518, 641, 690
MseI TTAA 2 cut(s) 435, 749
MspI CCGG 5 cut(s) 243, 387, 399, 695, 816
MspR9I CCNGG 4 cut(s) 327, 387, 399, 816
MunI CAATTG 1 cut(s) 422
MvaI CCWGG 1 cut(s) 327
MwoI GCNNNNNNNGC 3 cut(s) 290, 304, 704
NciI CCSGG 3 cut(s) 387, 399, 816
NcoI CCATGG 1 cut(s) 441
NdeII GATC 2 cut(s) 573, 603
NheI GCTAGC 1 cut(s) 1045
NlaIII CATG 3 cut(s) 190, 445, 616
NmuCI GTSAC 1 cut(s) 450
NsbI TGCGCA 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 800
PfeI GAWTC 4 cut(s) 149, 712, 819, 864
Pfl23II CGTACG 1 cut(s) 213
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 1 cut(s) 385
PinAI ACCGGT 1 cut(s) 242
PkrI GCNGC 6 cut(s) 85, 118, 185, 210, 907, 983
PleI GAGTC 2 cut(s) 131, 756
PpsI GAGTC 2 cut(s) 131, 756
Ppu21I YACGTR 1 cut(s) 1000
PpuMI RGGWCCY 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 1018
Psp5II RGGWCCY 1 cut(s) 677
Psp6I CCWGG 1 cut(s) 325
PspEI GGTNACC 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 493
PspGI CCWGG 1 cut(s) 325
PspLI CGTACG 1 cut(s) 213
PspPI GGNCC 4 cut(s) 197, 677, 1067, 1085
PspPPI RGGWCCY 1 cut(s) 677
PsrI GAACNNNNNNTAC 4 cut(s) 149, 181, 718, 750
PstNI CAGNNNCTG 1 cut(s) 466
PsuI RGATCY 1 cut(s) 573
RsaI GTAC 4 cut(s) 215, 270, 693, 998
RsaNI GTAC 4 cut(s) 214, 269, 692, 997
SacI GAGCTC 1 cut(s) 1018
SapI GCTCTTC 1 cut(s) 800
SaqAI TTAA 2 cut(s) 435, 749
SatI GCNGC 6 cut(s) 84, 117, 184, 209, 906, 982
Sau3AI GATC 2 cut(s) 573, 603
Sau96I GGNCC 4 cut(s) 197, 677, 1067, 1085
SchI GAGTC 2 cut(s) 131, 756
ScrFI CCNGG 4 cut(s) 327, 387, 399, 816
SduI GDGCHC 2 cut(s) 627, 1018
SexAI ACCWGGT 1 cut(s) 325
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 1 cut(s) 569
SinI GGWCC 3 cut(s) 197, 677, 1067
Sse9I AATT 7 cut(s) 355, 422, 657, 787, 824, 940, 1075
SsiI CCGC 2 cut(s) 116, 183
SspI AATATT 1 cut(s) 834
SspMI CTAG 3 cut(s) 204, 755, 1046
SstI GAGCTC 1 cut(s) 1018
StyD4I CCNGG 4 cut(s) 325, 385, 397, 814
StyI CCWWGG 1 cut(s) 441
TaaI ACNGT 6 cut(s) 29, 49, 218, 588, 978, 1096
TaiI ACGT 1 cut(s) 1002
TasI AATT 7 cut(s) 355, 422, 657, 787, 824, 940, 1075
TauI GCSGC 2 cut(s) 119, 186
TfiI GAWTC 4 cut(s) 149, 712, 819, 864
Tru1I TTAA 2 cut(s) 435, 749
Tru9I TTAA 2 cut(s) 435, 749
TscAI CASTG 3 cut(s) 459, 625, 1099
TseFI GTSAC 1 cut(s) 450
TseI GCWGC 4 cut(s) 83, 208, 905, 981
Tsp45I GTSAC 1 cut(s) 450
TspDTI ATGAA 1 cut(s) 725
TspRI CASTG 3 cut(s) 459, 625, 1099
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 3 cut(s) 197, 677, 1067
XapI RAATTY 2 cut(s) 824, 1075
XcmI CCANNNNNNNNNTGG 2 cut(s) 170, 490
XspI CTAG 3 cut(s) 204, 755, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.