RchiOBHm_Chr2g0147111

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
64788435 .. 64790501
2067 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51677

Sequence Viewer

Length: 1086 bp
ATGTGGCAAGTCTTGGCTGCATTTTCTATTCACGGTCTGTTCAATTATAGGCCGGCAGATAATCATGAGCTAAAACAGAAGGCGGCGGCGTTGTTTGTGTTTGGGGACTCACTCTTTGATATTGGCAATAATCAATACCTTAATACTAGCGCACGAGAATTATCGGCAACATACTGGCCATATGGAGAAAACTTCTTCCATCATCCCACCGGGAGATTTTCCGACGGTCGTTTAGTCCCTGATTTCATCCGACAGTTTGCAAAGTTGCCCATCATTCCACCGTACCTGCAACCTGGTCCCCATAATTTTACTGACGGAACCAACTTTGCTTCAGCCGACGCCGGTATTCTTCCTGAAACCAATCCAGGAACAGTAAGTCTTCCATTGCAGCTAAGCTATTTTAAGGCCGTGAAGAAGTTGCTGCAACAACAACTTTGTGATGAAGAGGCCAAGAGTTTGCTGGGGAGCGCTGTTTACTTGATCAGCATTGGTGGCAATGATTATTTTAGCTTCTACGCCAATTACCCCTACGCCAATGAGTCCATCCAGCAAGAATTTGTAGCTATTGTGATCAGCAAGTTGACCATTGTGCTCCAAGAAATATATGATTTAGGAGGAAGGAAAGTTGCATTTCAAAATGCGGGACCTATTGGTTGTCTACCTTCGGTAAAACAGGCATACAACACTGAACTTAGTGATGGGTGTGTTGAAGAACTCGAGAGTTTGATAAGGCTACACAATACAGCTCTGGCAAATGTCCTCAAAGAGTTGGAGAGCCAGAAGCCAGGGTTCAAATACTCAGTTTTTGAGTACTATGATGCGATTGGAGATCGAATGCATAACCCAGCAAAATATGGCTTTACTGACGGCTCAGATGCGTGTTGTGGTATTGGAGCATACTGGGGATCTGGTTGCGGTAATGAAACAAAAGGGTATGAGTTATGTAGTGACCCTGGGAATTATGTGTGGTTCGATGGTAGCCACACCACTGAAAAAGTCAACCTACAATTAGCAAAGCTGATATGGAGTGGAACACCAGATGTAACTGGGCCTTACAATGTTAAACAACTTTTTGGACATGTTTGA

Protein Analysis

361

Amino Acids

40.0

Weight (kDa)

5.28

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 31 - 341 3.7e-30 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccI GTMKAC 1 cut(s) 658
AciI CCGC 4 cut(s) 83, 86, 641, 915
AclWI GGATC 1 cut(s) 913
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 1 cut(s) 554
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 2 cut(s) 284, 812
AfeI AGCGCT 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 1078
AgsI TTSAA 4 cut(s) 43, 635, 710, 793
AjnI CCWGG 4 cut(s) 292, 364, 784, 952
AluBI AGCT 7 cut(s) 70, 391, 396, 510, 563, 746, 1018
AluI AGCT 7 cut(s) 70, 391, 396, 510, 563, 746, 1018
Alw21I GWGCWC 1 cut(s) 594
AlwI GGATC 1 cut(s) 913
Ama87I CYCGRG 1 cut(s) 716
Aor51HI AGCGCT 1 cut(s) 469
AoxI GGCC 5 cut(s) 50, 176, 405, 447, 1049
ApeKI GCWGC 3 cut(s) 17, 388, 421
ApoI RAATTY 1 cut(s) 554
ArsI GACNNNNNNTTYG 2 cut(s) 98, 130
AspLEI GCGC 2 cut(s) 152, 470
AspS9I GGNCC 3 cut(s) 296, 644, 1049
AsuC2I CCSGG 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 716
AvaII GGWCC 2 cut(s) 296, 644
BalI TGGCCA 1 cut(s) 178
BauI CACGAG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 3 cut(s) 4, 400, 408
BccI CCATC 5 cut(s) 207, 278, 551, 692, 968
BceAI ACGGC 2 cut(s) 392, 883
BciT130I CCWGG 4 cut(s) 294, 366, 786, 954
BclI TGATCA 2 cut(s) 480, 570
BcnI CCSGG 1 cut(s) 211
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 5 cut(s) 18, 84, 87, 389, 422
BlpI GCTNAGC 1 cut(s) 392
BlsI GCNGC 5 cut(s) 19, 85, 88, 390, 423
BmcAI AGTACT 1 cut(s) 812
Bme1390I CCNGG 5 cut(s) 211, 294, 366, 786, 954
Bme18I GGWCC 2 cut(s) 296, 644
BmeT110I CYCGRG 1 cut(s) 716
BmgT120I GGNCC 3 cut(s) 296, 644, 1049
BmiI GGNNCC 3 cut(s) 298, 319, 645
BmrFI CCNGG 5 cut(s) 211, 294, 366, 786, 954
BmrI ACTGGG 2 cut(s) 910, 1056
BmsI GCATC 2 cut(s) 808, 865
BmuI ACTGGG 2 cut(s) 910, 1056
BpiI GAAGAC 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 392
BpuMI CCSGG 1 cut(s) 211
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 3 cut(s) 785, 952, 953
Bse118I RCCGGY 2 cut(s) 52, 341
Bse1I ACTGG 3 cut(s) 179, 905, 1051
Bse3DI GCAATG 2 cut(s) 383, 502
BseBI CCWGG 4 cut(s) 294, 366, 786, 954
BseDI CCNNGG 3 cut(s) 785, 952, 953
BseGI GGATG 3 cut(s) 202, 246, 543
BseMI GCAATG 2 cut(s) 383, 502
BseMII CTCAG 2 cut(s) 813, 885
BseNI ACTGG 3 cut(s) 179, 905, 1051
BseXI GCAGC 3 cut(s) 4, 400, 408
BseYI CCCAGC 2 cut(s) 460, 844
Bsh1285I CGRYCG 1 cut(s) 229
BshFI GGCC 5 cut(s) 52, 178, 407, 449, 1051
BsiEI CGRYCG 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 716
BsiSI CCGG 3 cut(s) 53, 210, 342
BslFI GGGAC 4 cut(s) 119, 221, 282, 657
BsmFI GGGAC 4 cut(s) 119, 221, 282, 657
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 5 cut(s) 52, 178, 407, 449, 1051
BsoBI CYCGRG 1 cut(s) 716
Bsp1286I GDGCHC 1 cut(s) 594
Bsp143I GATC 4 cut(s) 480, 570, 829, 905
Bsp1720I GCTNAGC 1 cut(s) 392
BspACI CCGC 4 cut(s) 83, 86, 641, 915
BspANI GGCC 5 cut(s) 52, 178, 407, 449, 1051
BspCNI CTCAG 2 cut(s) 812, 884
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 3 cut(s) 298, 319, 645
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 1 cut(s) 913
BsrDI GCAATG 2 cut(s) 383, 502
BsrFI RCCGGY 2 cut(s) 52, 341
BsrI ACTGG 3 cut(s) 179, 905, 1051
BssAI RCCGGY 2 cut(s) 52, 341
BssECI CCNNGG 3 cut(s) 785, 952, 953
BssMI GATC 4 cut(s) 480, 570, 829, 905
BssNI GRCGYC 1 cut(s) 339
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 4 cut(s) 294, 366, 786, 954
Bst4CI ACNGT 5 cut(s) 35, 227, 255, 282, 373
Bst6I CTCTTC 1 cut(s) 438
BstACI GRCGYC 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 54
BstDEI CTNAG 4 cut(s) 392, 692, 799, 871
BstF5I GGATG 3 cut(s) 202, 246, 543
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 2 cut(s) 152, 470
BstKTI GATC 4 cut(s) 483, 573, 832, 908
BstMBI GATC 4 cut(s) 480, 570, 829, 905
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 492
BstNI CCWGG 4 cut(s) 294, 366, 786, 954
BstNSI RCATGY 1 cut(s) 1082
BstSCI CCNGG 5 cut(s) 209, 292, 364, 784, 952
BstV1I GCAGC 3 cut(s) 4, 400, 408
BstV2I GAAGAC 1 cut(s) 371
BstX2I RGATCY 1 cut(s) 905
BstYI RGATCY 1 cut(s) 905
BsuRI GGCC 5 cut(s) 52, 178, 407, 449, 1051
BtsCI GGATG 3 cut(s) 202, 246, 543
BtsIMutI CAGTG 2 cut(s) 684, 987
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 54
CciI TCATGA 1 cut(s) 64
CfoI GCGC 2 cut(s) 152, 470
Cfr10I RCCGGY 2 cut(s) 52, 341
Cfr13I GGNCC 3 cut(s) 296, 644, 1049
CseI GACGC 1 cut(s) 347
CsiI ACCWGGT 1 cut(s) 292
Csp6I GTAC 2 cut(s) 283, 811
CviAII CATG 2 cut(s) 65, 1079
CviQI GTAC 2 cut(s) 283, 811
DdeI CTNAG 4 cut(s) 392, 692, 799, 871
DpnI GATC 4 cut(s) 482, 572, 831, 907
DpnII GATC 4 cut(s) 480, 570, 829, 905
EaeI YGGCCR 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
Eco47I GGWCC 2 cut(s) 296, 644
Eco47III AGCGCT 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 644
EcoRII CCWGG 4 cut(s) 292, 364, 784, 952
EcoT22I ATGCAT 1 cut(s) 840
FaeI CATG 2 cut(s) 68, 1082
FaqI GGGAC 4 cut(s) 119, 221, 282, 657
FatI CATG 2 cut(s) 64, 1078
FauI CCCGC 1 cut(s) 634
FauNDI CATATG 1 cut(s) 181
FbaI TGATCA 2 cut(s) 480, 570
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 18, 84, 87, 389, 422
FokI GGATG 3 cut(s) 189, 233, 530
Fsp4HI GCNGC 5 cut(s) 18, 84, 87, 389, 422
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 151, 469
GluI GCNGC 5 cut(s) 18, 84, 87, 389, 422
GsaI CCCAGC 2 cut(s) 464, 848
HaeII RGCGCY 1 cut(s) 471
HaeIII GGCC 5 cut(s) 52, 178, 407, 449, 1051
HapII CCGG 3 cut(s) 53, 210, 342
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 152, 470
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 68, 1082
Hin6I GCGC 2 cut(s) 150, 468
HinP1I GCGC 2 cut(s) 150, 468
HincII GTYRAC 2 cut(s) 582, 1000
HindII GTYRAC 2 cut(s) 582, 1000
HinfI GANTC 2 cut(s) 107, 539
HpaII CCGG 3 cut(s) 53, 210, 342
Hpy166II GTNNAC 4 cut(s) 475, 582, 659, 1000
Hpy188I TCNGA 3 cut(s) 223, 251, 874
Hpy188III TCNNGA 3 cut(s) 65, 353, 718
Hpy8I GTNNAC 4 cut(s) 475, 582, 659, 1000
Hpy99I CGWCG 2 cut(s) 227, 341
HpyAV CCTTC 3 cut(s) 73, 612, 672
HpyCH4III ACNGT 5 cut(s) 35, 227, 255, 282, 373
HpyCH4V TGCA 7 cut(s) 20, 260, 289, 388, 424, 629, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 492
HpyF3I CTNAG 4 cut(s) 392, 692, 799, 871
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 68, 1082
HspAI GCGC 2 cut(s) 150, 468
KroI GCCGGC 1 cut(s) 52
KroNI GCCGGC 1 cut(s) 54
Ksp22I TGATCA 2 cut(s) 480, 570
Kzo9I GATC 4 cut(s) 480, 570, 829, 905
LmnI GCTCC 3 cut(s) 465, 597, 893
Lsp1109I GCAGC 3 cut(s) 4, 400, 408
LweI GCATC 2 cut(s) 808, 865
MabI ACCWGGT 1 cut(s) 292
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 2 cut(s) 947, 1042
MalI GATC 4 cut(s) 482, 572, 831, 907
MboI GATC 4 cut(s) 480, 570, 829, 905
MboII GAAGA 6 cut(s) 187, 341, 371, 424, 455, 722
MflI RGATCY 1 cut(s) 905
MhlI GDGCHC 1 cut(s) 594
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 7 cut(s) 43, 158, 304, 520, 554, 958, 1007
MluNI TGGCCA 1 cut(s) 178
MlyI GAGTC 2 cut(s) 101, 548
MmeI TCCRAC 3 cut(s) 246, 274, 750
MnlI CCTC 3 cut(s) 439, 608, 770
Mox20I TGGCCA 1 cut(s) 178
Mph1103I ATGCAT 1 cut(s) 840
MroNI GCCGGC 1 cut(s) 52
MscI TGGCCA 1 cut(s) 178
MseI TTAA 3 cut(s) 141, 402, 1062
Msp20I TGGCCA 1 cut(s) 178
MspI CCGG 3 cut(s) 53, 210, 342
MspR9I CCNGG 5 cut(s) 211, 294, 366, 786, 954
Mva1269I GAATGC 1 cut(s) 840
MvaI CCWGG 4 cut(s) 294, 366, 786, 954
MwoI GCNNNNNNNGC 1 cut(s) 492
NaeI GCCGGC 1 cut(s) 54
NciI CCSGG 1 cut(s) 211
NdeI CATATG 1 cut(s) 181
NdeII GATC 4 cut(s) 480, 570, 829, 905
NgoMIV GCCGGC 1 cut(s) 52
NlaIII CATG 2 cut(s) 68, 1082
NlaIV GGNNCC 3 cut(s) 298, 319, 645
NmuCI GTSAC 1 cut(s) 947
NsiI ATGCAT 1 cut(s) 840
NspI RCATGY 1 cut(s) 1082
PaeR7I CTCGAG 1 cut(s) 716
PagI TCATGA 1 cut(s) 64
PasI CCCWGGG 1 cut(s) 953
PciI ACATGT 1 cut(s) 1078
PctI GAATGC 1 cut(s) 840
PdiI GCCGGC 1 cut(s) 54
PfoI TCCNGGA 1 cut(s) 364
PkrI GCNGC 5 cut(s) 19, 85, 88, 390, 423
PleI GAGTC 2 cut(s) 101, 547
PpsI GAGTC 2 cut(s) 101, 547
PpuMI RGGWCCY 1 cut(s) 644
PscI ACATGT 1 cut(s) 1078
Psp5II RGGWCCY 1 cut(s) 644
Psp6I CCWGG 4 cut(s) 292, 364, 784, 952
PspFI CCCAGC 2 cut(s) 460, 844
PspGI CCWGG 4 cut(s) 292, 364, 784, 952
PspN4I GGNNCC 3 cut(s) 298, 319, 645
PspPI GGNCC 3 cut(s) 296, 644, 1049
PspPPI RGGWCCY 1 cut(s) 644
PsuI RGATCY 1 cut(s) 905
RsaI GTAC 2 cut(s) 284, 812
RsaNI GTAC 2 cut(s) 283, 811
SaqAI TTAA 3 cut(s) 141, 402, 1062
SatI GCNGC 5 cut(s) 18, 84, 87, 389, 422
Sau3AI GATC 4 cut(s) 480, 570, 829, 905
Sau96I GGNCC 3 cut(s) 296, 644, 1049
ScaI AGTACT 1 cut(s) 812
SchI GAGTC 2 cut(s) 101, 548
ScrFI CCNGG 5 cut(s) 211, 294, 366, 786, 954
SduI GDGCHC 1 cut(s) 594
SexAI ACCWGGT 1 cut(s) 292
SfaNI GCATC 2 cut(s) 808, 865
Sfr274I CTCGAG 1 cut(s) 716
SinI GGWCC 2 cut(s) 296, 644
SlaI CTCGAG 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 716
SmoI CTYRAG 1 cut(s) 716
Sse9I AATT 7 cut(s) 43, 158, 304, 520, 554, 958, 1007
SsiI CCGC 4 cut(s) 83, 86, 641, 915
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 5 cut(s) 209, 292, 364, 784, 952
TaaI ACNGT 5 cut(s) 35, 227, 255, 282, 373
TaqI TCGA 3 cut(s) 717, 832, 972
TasI AATT 7 cut(s) 43, 158, 304, 520, 554, 958, 1007
TatI WGTACW 1 cut(s) 810
TauI GCSGC 2 cut(s) 86, 89
Tru1I TTAA 3 cut(s) 141, 402, 1062
Tru9I TTAA 3 cut(s) 141, 402, 1062
TscAI CASTG 2 cut(s) 691, 994
TseFI GTSAC 1 cut(s) 947
TseI GCWGC 3 cut(s) 17, 388, 421
Tsp45I GTSAC 1 cut(s) 947
TspDTI ATGAA 3 cut(s) 235, 456, 936
TspGWI ACGGA 1 cut(s) 330
TspRI CASTG 2 cut(s) 691, 994
VpaK11BI GGWCC 2 cut(s) 296, 644
XapI RAATTY 1 cut(s) 554
XceI RCATGY 1 cut(s) 1082
XcmI CCANNNNNNNNNTGG 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 716
XmiI GTMKAC 1 cut(s) 658
XspI CTAG 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 812
Zsp2I ATGCAT 1 cut(s) 840
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.