FvH4_6g35550

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28049106 .. 28051283
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35550.t1

Sequence Viewer

Length: 1137 bp
ATGGCGAGCCTTAGCTACCTTCTTTATGTTTTGGTAAGCCTTTTGAACCCAGTTAGCTACCTTCTTTATGGTCATGACCGGTTCAACTATAAACCAGCAGCAGACGATAATGAGGTACAATATAAGACCTTGTTTGTGTTTGGAGACTCGCTGTATGATCCTGGCAACGATCAATACCTCCCTAATGTCACCGTAGAAGAATACCCAGCAACAACCTGGCCATATGGAGAAACCTTCTTTCATCGCCCCAACGGAAGACTTTCCGATGGCCGTATAGTCCCGGACTTCATCGCCAAGTTAGCAAACTTGCCAATGCCTCCACCCTACCTGCAACCAGATCCAAAAAATTATACCAACGGAGTCAGCTTTGCTTCAGCCGGTGCCGGAGTTCTAGTTGAAACTGATCCAGGAACTATAAATCTTCCATTACAATTGAGCTACTTTAAGAACGTGACGGAGTTGTTGCAAGAGCAACTCGGTGATGAAGAGGCCAAGAAGTTGCTGGGGAGTGCTGTGTACTTGATTAGCATGGGAGGCAATGACTATTTTACCTTCTACGCTGAATACCAAGAAAATGCCACCGAGGCCCTCCAGCAGGAATTCATAGGAATTGTTATCGGCAACTTGACCACTGTTCTCCAAGGAATATACGACTTAGGTGGGAGGAAAATAGCATTTCAAAATGCAGGACCTCTTGGGTGCTTACCTTACGCAAAACAAGAATACGACACTCAACTTGTAATTGGGTGCGTTGAAGGGCTCCAGAGTCTGGCAAGGCAACACAATAAAGCTCTAGCTAGTGTCCTCAAAGAGCTAGAGAGCCAACTACCGGGGTTCAAATATTCGATATTCGAGTACTATGATGCACTTGGCGACCGAGTTCTTAACCCCAGCAAATACGGCTTTAAGGATGGAACAGATGCGTGTTGCGGTAGAGGGGCGTACAGAGGATCTGATTGTGGCGGACTAAATGGAACGGTGGCATATGAGTTATGTAGTAATCCTGGAGATAGTGTGTGGTTTGATGGGAGTCATACAACTGAAAGGGCAAACCTGCAGTTGGCGGAACTGATTTGGAGTGGAACACCCAATGTGACATGGCCTTACAATGTCCAACAACTTTTTGAACAAGAATAA

Protein Analysis

379

Amino Acids

41.88

Weight (kDa)

4.54

Isoelectric Point (pI)

33.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 44 - 358 3.8e-31 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 336, 1062
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 769
AciI CCGC 3 cut(s) 930, 963, 1064
AclWI GGATC 4 cut(s) 152, 332, 398, 958
AcoI YGGCCR 2 cut(s) 218, 268
AcsI RAATTY 1 cut(s) 599
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 4 cut(s) 117, 518, 857, 944
AfiI CCNNNNNNNGG 4 cut(s) 595, 769, 829, 1060
AgeI ACCGGT 1 cut(s) 78
AgsI TTSAA 7 cut(s) 46, 85, 398, 680, 755, 838, 1127
AjnI CCWGG 4 cut(s) 160, 215, 406, 1003
AluBI AGCT 7 cut(s) 15, 57, 366, 438, 791, 797, 814
AluI AGCT 7 cut(s) 15, 57, 366, 438, 791, 797, 814
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 4 cut(s) 152, 332, 398, 958
AlwNI CAGNNNCTG 1 cut(s) 769
AoxI GGCC 5 cut(s) 218, 268, 489, 585, 1100
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 599
AsiGI ACCGGT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 586, 689
AsuC2I CCSGG 2 cut(s) 281, 831
AsuHPI GGTGA 2 cut(s) 181, 491
AvaII GGWCC 1 cut(s) 689
BalI TGGCCA 1 cut(s) 220
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 762
BbsI GAAGAC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 110
BccI CCATC 3 cut(s) 260, 905, 1019
BceAI ACGGC 2 cut(s) 255, 916
BciT130I CCWGG 4 cut(s) 162, 217, 408, 1005
BcnI CCSGG 2 cut(s) 281, 831
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 4 cut(s) 392, 794, 798, 815
BfmI CTRYAG 1 cut(s) 1055
BfuAI ACCTGC 2 cut(s) 336, 1062
BglI GCCNNNNNGGC 1 cut(s) 584
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 857
Bme1390I CCNGG 6 cut(s) 162, 217, 281, 408, 831, 1005
Bme18I GGWCC 1 cut(s) 689
BmgT120I GGNCC 2 cut(s) 586, 689
BmiI GGNNCC 2 cut(s) 382, 761
BmrFI CCNGG 6 cut(s) 162, 217, 281, 408, 831, 1005
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 2 cut(s) 853, 910
BmuI ACTGGG 1 cut(s) 44
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 3 cut(s) 575, 746, 1026
Bpu10I CCTNAGC 1 cut(s) 11
BpuMI CCSGG 2 cut(s) 281, 831
BsaJI CCNNGG 3 cut(s) 582, 640, 830
BsaWI WCCGGW 1 cut(s) 78
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 999, 1029
Bsc4I CCNNNNNNNGG 4 cut(s) 595, 769, 829, 1060
Bse118I RCCGGY 2 cut(s) 78, 377
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 4 cut(s) 162, 217, 408, 1005
BseDI CCNNGG 3 cut(s) 582, 640, 830
BseGI GGATG 1 cut(s) 916
BseLI CCNNNNNNNGG 4 cut(s) 595, 769, 829, 1060
BseMI GCAATG 1 cut(s) 544
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 110
BseYI CCCAGC 3 cut(s) 205, 502, 890
Bsh1285I CGRYCG 1 cut(s) 877
BshFI GGCC 5 cut(s) 220, 270, 491, 587, 1102
BshNI GGYRCC 1 cut(s) 380
BshTI ACCGGT 1 cut(s) 78
BsiEI CGRYCG 1 cut(s) 877
BsiSI CCGG 5 cut(s) 79, 281, 378, 384, 830
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 4 cut(s) 595, 769, 829, 1060
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 5 cut(s) 220, 270, 491, 587, 1102
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 5 cut(s) 157, 169, 337, 403, 950
BspACI CCGC 3 cut(s) 930, 963, 1064
BspANI GGCC 5 cut(s) 220, 270, 491, 587, 1102
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 382, 761
BspMAI CTGCAG 1 cut(s) 1059
BspMI ACCTGC 2 cut(s) 336, 1062
BspPI GGATC 4 cut(s) 152, 332, 398, 958
BspT107I GGYRCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 544
BsrFI RCCGGY 2 cut(s) 78, 377
BsrI ACTGG 1 cut(s) 50
BssAI RCCGGY 2 cut(s) 78, 377
BssECI CCNNGG 3 cut(s) 582, 640, 830
BssMI GATC 5 cut(s) 157, 169, 337, 403, 950
BssT1I CCWWGG 1 cut(s) 640
Bst2UI CCWGG 4 cut(s) 162, 217, 408, 1005
Bst4CI ACNGT 3 cut(s) 193, 634, 979
Bst6I CTCTTC 1 cut(s) 480
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 11, 655
BstENI CCTNNNNNAGG 1 cut(s) 593
BstF5I GGATG 1 cut(s) 916
BstKTI GATC 5 cut(s) 160, 172, 340, 406, 953
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 5 cut(s) 157, 169, 337, 403, 950
BstMCI CGRYCG 1 cut(s) 877
BstMWI GCNNNNNNNGC 4 cut(s) 299, 534, 584, 900
BstNI CCWGG 4 cut(s) 162, 217, 408, 1005
BstSCI CCNGG 6 cut(s) 160, 215, 279, 406, 829, 1003
BstSFI CTRYAG 1 cut(s) 1055
BstV1I GCAGC 1 cut(s) 110
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 2 cut(s) 337, 950
BstYI RGATCY 2 cut(s) 337, 950
BsuRI GGCC 5 cut(s) 220, 270, 491, 587, 1102
BtgZI GCGATG 2 cut(s) 227, 274
BtsCI GGATG 1 cut(s) 916
BtsIMutI CAGTG 1 cut(s) 630
BveI ACCTGC 2 cut(s) 336, 1062
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 769
CciI TCATGA 1 cut(s) 73
Cfr10I RCCGGY 2 cut(s) 78, 377
Cfr13I GGNCC 2 cut(s) 586, 689
Csp6I GTAC 4 cut(s) 116, 517, 856, 943
CspAI ACCGGT 1 cut(s) 78
CviAII CATG 3 cut(s) 74, 529, 1098
CviQI GTAC 4 cut(s) 116, 517, 856, 943
DdeI CTNAG 2 cut(s) 11, 655
DpnI GATC 5 cut(s) 159, 171, 339, 405, 952
DpnII GATC 5 cut(s) 157, 169, 337, 403, 950
EaeI YGGCCR 2 cut(s) 218, 268
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
EciI GGCGGA 2 cut(s) 978, 1079
Eco130I CCWWGG 1 cut(s) 640
Eco24I GRGCYC 1 cut(s) 762
Eco47I GGWCC 1 cut(s) 689
Eco57I CTGAAG 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 593
EcoO109I RGGNCCY 2 cut(s) 586, 689
EcoRI GAATTC 1 cut(s) 599
EcoRII CCWGG 4 cut(s) 160, 215, 406, 1003
EcoT14I CCWWGG 1 cut(s) 640
EcoT38I GRGCYC 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 640
FaeI CATG 3 cut(s) 77, 532, 1101
FaqI GGGAC 1 cut(s) 263
FatI CATG 3 cut(s) 73, 528, 1097
FauNDI CATATG 2 cut(s) 223, 985
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 923
FriOI GRGCYC 1 cut(s) 762
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 4 cut(s) 392, 794, 798, 815
GluI GCNGC 1 cut(s) 99
GsaI CCCAGC 3 cut(s) 209, 506, 894
GsuI CTGGAG 3 cut(s) 575, 746, 1026
HaeIII GGCC 5 cut(s) 220, 270, 491, 587, 1102
HapII CCGG 5 cut(s) 79, 281, 378, 384, 830
Hin1II CATG 3 cut(s) 77, 532, 1101
HinfI GANTC 4 cut(s) 146, 360, 766, 1030
HpaII CCGG 5 cut(s) 79, 281, 378, 384, 830
HphI GGTGA 2 cut(s) 181, 491
Hpy166II GTNNAC 1 cut(s) 517
Hpy188I TCNGA 2 cut(s) 265, 955
Hpy188III TCNNGA 2 cut(s) 74, 763
Hpy8I GTNNAC 1 cut(s) 517
HpyAV CCTTC 5 cut(s) 29, 71, 244, 562, 749
HpyCH4III ACNGT 3 cut(s) 193, 634, 979
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 5 cut(s) 331, 466, 686, 866, 1057
HpyF10VI GCNNNNNNNGC 4 cut(s) 299, 534, 584, 900
HpyF3I CTNAG 2 cut(s) 11, 655
HpySE526I ACGT 1 cut(s) 450
Hsp92II CATG 3 cut(s) 77, 532, 1101
Kzo9I GATC 5 cut(s) 157, 169, 337, 403, 950
LmnI GCTCC 1 cut(s) 765
Lsp1109I GCAGC 1 cut(s) 110
LweI GCATC 2 cut(s) 853, 910
MaeI CTAG 4 cut(s) 392, 794, 798, 815
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 3 cut(s) 187, 451, 1093
MalI GATC 5 cut(s) 159, 171, 339, 405, 952
MboI GATC 5 cut(s) 157, 169, 337, 403, 950
MboII GAAGA 4 cut(s) 209, 267, 413, 497
MfeI CAATTG 1 cut(s) 431
MflI RGATCY 2 cut(s) 337, 950
MhlI GDGCHC 1 cut(s) 762
MlsI TGGCCA 1 cut(s) 220
MluCI AATT 5 cut(s) 346, 431, 599, 609, 741
MluNI TGGCCA 1 cut(s) 220
MlyI GAGTC 4 cut(s) 140, 369, 775, 1039
Mox20I TGGCCA 1 cut(s) 220
MroXI GAANNNNTTC 1 cut(s) 259
MscI TGGCCA 1 cut(s) 220
MseI TTAA 3 cut(s) 444, 885, 906
Msp20I TGGCCA 1 cut(s) 220
MspI CCGG 5 cut(s) 79, 281, 378, 384, 830
MspR9I CCNGG 6 cut(s) 162, 217, 281, 408, 831, 1005
MunI CAATTG 1 cut(s) 431
MvaI CCWGG 4 cut(s) 162, 217, 408, 1005
MwoI GCNNNNNNNGC 4 cut(s) 299, 534, 584, 900
NciI CCSGG 2 cut(s) 281, 831
NdeI CATATG 2 cut(s) 223, 985
NdeII GATC 5 cut(s) 157, 169, 337, 403, 950
NlaIII CATG 3 cut(s) 77, 532, 1101
NlaIV GGNNCC 2 cut(s) 382, 761
NmuCI GTSAC 3 cut(s) 187, 451, 1093
PagI TCATGA 1 cut(s) 73
PdmI GAANNNNTTC 1 cut(s) 259
PflMI CCANNNNNTGG 1 cut(s) 769
PfoI TCCNGGA 3 cut(s) 279, 406, 1003
PinAI ACCGGT 1 cut(s) 78
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 4 cut(s) 140, 368, 774, 1038
PpsI GAGTC 4 cut(s) 140, 368, 774, 1038
PpuMI RGGWCCY 1 cut(s) 689
Psp5II RGGWCCY 1 cut(s) 689
Psp6I CCWGG 4 cut(s) 160, 215, 406, 1003
PspFI CCCAGC 3 cut(s) 205, 502, 890
PspGI CCWGG 4 cut(s) 160, 215, 406, 1003
PspN4I GGNNCC 2 cut(s) 382, 761
PspPI GGNCC 2 cut(s) 586, 689
PspPPI RGGWCCY 1 cut(s) 689
PstI CTGCAG 1 cut(s) 1059
PstNI CAGNNNCTG 1 cut(s) 769
PsuI RGATCY 2 cut(s) 337, 950
RsaI GTAC 4 cut(s) 117, 518, 857, 944
RsaNI GTAC 4 cut(s) 116, 517, 856, 943
SaqAI TTAA 3 cut(s) 444, 885, 906
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 5 cut(s) 157, 169, 337, 403, 950
Sau96I GGNCC 2 cut(s) 586, 689
ScaI AGTACT 1 cut(s) 857
SchI GAGTC 4 cut(s) 140, 369, 775, 1039
ScrFI CCNGG 6 cut(s) 162, 217, 281, 408, 831, 1005
SduI GDGCHC 1 cut(s) 762
SfaNI GCATC 2 cut(s) 853, 910
SfcI CTRYAG 1 cut(s) 1055
SinI GGWCC 1 cut(s) 689
Sse9I AATT 5 cut(s) 346, 431, 599, 609, 741
SsiI CCGC 3 cut(s) 930, 963, 1064
SspI AATATT 1 cut(s) 842
SspMI CTAG 4 cut(s) 392, 794, 798, 815
StyD4I CCNGG 6 cut(s) 160, 215, 279, 406, 829, 1003
StyI CCWWGG 1 cut(s) 640
TaaI ACNGT 3 cut(s) 193, 634, 979
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 845, 852
TaqII GACCGA 1 cut(s) 891
TasI AATT 5 cut(s) 346, 431, 599, 609, 741
TatI WGTACW 2 cut(s) 516, 855
Tru1I TTAA 3 cut(s) 444, 885, 906
Tru9I TTAA 3 cut(s) 444, 885, 906
TscAI CASTG 1 cut(s) 637
TseFI GTSAC 3 cut(s) 187, 451, 1093
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 3 cut(s) 187, 451, 1093
TspDTI ATGAA 4 cut(s) 230, 277, 498, 592
TspGWI ACGGA 3 cut(s) 267, 372, 470
TspRI CASTG 1 cut(s) 637
Van91I CCANNNNNTGG 1 cut(s) 769
VpaK11BI GGWCC 1 cut(s) 689
XagI CCTNNNNNAGG 1 cut(s) 593
XapI RAATTY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 2 cut(s) 213, 499
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 4 cut(s) 392, 794, 798, 815
ZrmI AGTACT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.