Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002506.1

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

3231 .. 5281

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002506.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atgttacgtttcatatttacgtttcaatttagccaccatattgatctcacttcattaaactcttatagtgttgctatgaacaaagctgctgtttcacctaagtttggaaaactgccaatgcttccaccatatctgcaacctggtccacatgattttactgatggatccaactttgcttcaggaggagccggagttcttgaaacaactaacccaggatcgtcaataagtcttccgacgcagttaagctatttaaaaaatgtggcaaagttgctggagctgaagttaggtgatttagaagccaaacgtgtgctgaggaccgctgtttacttgttcagcatcggaggggtggatgatatggtcttctactctacatatccaaatgccaccgagtccctgcgatccgaattcatagcaaatgtgattggtaacttgaccgttgtgctcaaagaaatatacaacttaggaggaaggaagattgcatttcagaatgtaggatctcttgggtgccaacctataaatagacaatcatacggtgccattgaagggtatgttgaaggacttttgactttggcgaggctacacaatagagctctagctaatgtcctcgaagaactagagctagagctatcgggattcaaatattcaatatttaactactatgatgcgcttttggaactataccataaccctgcaaaacatgggttcacaaatgggtcggattcatgttgtggtataggaccataccgagcagttgattgcggcggagataatggaaccaaaccatatgaattgtgcccaaacccaggtgactatgtgtggtgggatggtggccattcgactgaaagagcaaaccttaaattggcagagctaatatggagtggcacgctaaatactaccgggccttacaatgtcaaacagttttttcagcaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005777 GO:0005829 GO:0005840 GO:0005911 GO:0006082 GO:0006790 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009409 GO:0009505 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009625 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016143 GO:0016145 GO:0019748 GO:0019757 GO:0019759 GO:0019760 GO:0019762 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031967 GO:0031975 GO:0032991 GO:0042579 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0044237 GO:0044248 GO:0044273 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901135 GO:1901136 GO:1901564 GO:1901565 GO:1901575 GO:1901657 GO:1901658 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

311

Amino Acids

34.19

Weight (kDa)

5.98

Isoelectric Point (pI)

28.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	504, 533
AciI	CCGC	3 cut(s)	318, 759, 762
AclWI	GGATC	5 cut(s)	159, 172, 223, 393, 502
AcoI	YGGCCR	1 cut(s)	829
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	2 cut(s)	162, 299
AfiI	CCNNNNNNNGG	4 cut(s)	104, 543, 803, 859
AflIII	ACRYGT	1 cut(s)	304
AgsI	TTSAA	6 cut(s)	26, 200, 542, 554, 637, 645
AjnI	CCWGG	3 cut(s)	139, 211, 802
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	8 cut(s)	86, 246, 277, 590, 596, 619, 625, 868
AluI	AGCT	8 cut(s)	86, 246, 277, 590, 596, 619, 625, 868
Alw21I	GWGCWC	2 cut(s)	444, 592
AlwI	GGATC	5 cut(s)	159, 172, 223, 393, 502
AoxI	GGCC	2 cut(s)	829, 899
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	667
AspS9I	GGNCC	4 cut(s)	143, 315, 737, 899
AsuC2I	CCSGG	1 cut(s)	898
AsuHPI	GGTGA	3 cut(s)	87, 299, 818
AvaII	GGWCC	3 cut(s)	143, 315, 737
BaeGI	GKGCMC	1 cut(s)	797
BalI	TGGCCA	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	504, 533
BanII	GRGCYC	1 cut(s)	592
BbsI	GAAGAC	2 cut(s)	221, 352
Bbv12I	GWGCWC	2 cut(s)	444, 592
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	155, 818
BciT130I	CCWGG	3 cut(s)	141, 213, 804
BcnI	CCSGG	1 cut(s)	898
BfaI	CTAG	3 cut(s)	593, 614, 620
BisI	GCNGC	2 cut(s)	87, 760
BlsI	GCNGC	2 cut(s)	88, 761
Bme1390I	CCNGG	4 cut(s)	141, 213, 804, 898
Bme18I	GGWCC	3 cut(s)	143, 315, 737
BmgT120I	GGNCC	4 cut(s)	143, 315, 737, 899
BmiI	GGNNCC	5 cut(s)	166, 187, 506, 535, 775
BmrFI	CCNGG	4 cut(s)	141, 213, 804, 898
BmsI	GCATC	2 cut(s)	345, 652
BpiI	GAAGAC	2 cut(s)	221, 352
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	898
BsaJI	CCNNGG	2 cut(s)	211, 802
BsaXI	ACNNNNNCTCC	4 cut(s)	177, 207, 266, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	104, 543, 803, 859
BseBI	CCWGG	3 cut(s)	141, 213, 804
BseDI	CCNNGG	2 cut(s)	211, 802
BseGI	GGATG	2 cut(s)	355, 829
BseLI	CCNNNNNNNGG	4 cut(s)	104, 543, 803, 859
BseMII	CTCAG	1 cut(s)	302
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	2 cut(s)	831, 901
BshNI	GGYRCC	2 cut(s)	504, 533
BsiHKAI	GWGCWC	2 cut(s)	444, 592
BsiSI	CCGG	2 cut(s)	189, 897
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	4 cut(s)	104, 543, 803, 859
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	831, 901
Bsp1286I	GDGCHC	3 cut(s)	444, 592, 797
Bsp143I	GATC	5 cut(s)	43, 164, 215, 398, 494
BspACI	CCGC	3 cut(s)	318, 759, 762
BspANI	GGCC	2 cut(s)	831, 901
BspCNI	CTCAG	1 cut(s)	303
BspLI	GGNNCC	5 cut(s)	166, 187, 506, 535, 775
BspPI	GGATC	5 cut(s)	159, 172, 223, 393, 502
BspT107I	GGYRCC	2 cut(s)	504, 533
BssECI	CCNNGG	2 cut(s)	211, 802
BssMI	GATC	5 cut(s)	43, 164, 215, 398, 494
Bst2UI	CCWGG	3 cut(s)	141, 213, 804
Bst4CI	ACNGT	3 cut(s)	436, 533, 918
BstC8I	GCNNGC	1 cut(s)	884
BstDEI	CTNAG	3 cut(s)	99, 311, 460
BstF5I	GGATG	2 cut(s)	355, 829
BstHHI	GCGC	1 cut(s)	667
BstKTI	GATC	5 cut(s)	46, 167, 218, 401, 497
BstMBI	GATC	5 cut(s)	43, 164, 215, 398, 494
BstNI	CCWGG	3 cut(s)	141, 213, 804
BstSCI	CCNGG	4 cut(s)	139, 211, 802, 896
BstSLI	GKGCMC	1 cut(s)	797
BstV1I	GCAGC	1 cut(s)	73
BstV2I	GAAGAC	2 cut(s)	221, 352
BstX2I	RGATCY	2 cut(s)	164, 494
BstYI	RGATCY	2 cut(s)	164, 494
BsuRI	GGCC	2 cut(s)	831, 901
BtsCI	GGATG	2 cut(s)	355, 829
Cac8I	GCNNGC	1 cut(s)	884
CfoI	GCGC	1 cut(s)	667
Cfr13I	GGNCC	4 cut(s)	143, 315, 737, 899
CseI	GACGC	1 cut(s)	244
CsiI	ACCWGGT	1 cut(s)	139
CviAII	CATG	3 cut(s)	149, 698, 723
DdeI	CTNAG	3 cut(s)	99, 311, 460
DpnI	GATC	5 cut(s)	45, 166, 217, 400, 496
DpnII	GATC	5 cut(s)	43, 164, 215, 398, 494
DraI	TTTAAA	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	829
EciI	GGCGGA	1 cut(s)	777
Ecl136II	GAGCTC	1 cut(s)	590
Eco24I	GRGCYC	1 cut(s)	592
Eco47I	GGWCC	3 cut(s)	143, 315, 737
Eco53kI	GAGCTC	1 cut(s)	590
Eco57I	CTGAAG	2 cut(s)	162, 299
EcoICRI	GAGCTC	1 cut(s)	590
EcoRI	GAATTC	1 cut(s)	404
EcoRII	CCWGG	3 cut(s)	139, 211, 802
EcoT38I	GRGCYC	1 cut(s)	592
FaeI	CATG	3 cut(s)	152, 701, 726
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	3 cut(s)	148, 697, 722
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	2 cut(s)	87, 760
FokI	GGATG	2 cut(s)	362, 836
FriOI	GRGCYC	1 cut(s)	592
Fsp4HI	GCNGC	2 cut(s)	87, 760
FspBI	CTAG	3 cut(s)	593, 614, 620
GlaI	GCGC	1 cut(s)	666
GluI	GCNGC	2 cut(s)	87, 760
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	831, 901
HapII	CCGG	2 cut(s)	189, 897
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	667
Hin1II	CATG	3 cut(s)	152, 701, 726
Hin6I	GCGC	1 cut(s)	665
HinP1I	GCGC	1 cut(s)	665
HinfI	GANTC	3 cut(s)	389, 633, 719
HpaII	CCGG	2 cut(s)	189, 897
HphI	GGTGA	3 cut(s)	87, 299, 818
Hpy166II	GTNNAC	3 cut(s)	146, 325, 705
Hpy188I	TCNGA	5 cut(s)	234, 341, 403, 486, 718
Hpy188III	TCNNGA	3 cut(s)	180, 197, 630
Hpy8I	GTNNAC	3 cut(s)	146, 325, 705
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	3 cut(s)	462, 536, 548
HpyCH4III	ACNGT	3 cut(s)	436, 533, 918
HpyCH4IV	ACGT	3 cut(s)	7, 20, 304
HpyCH4V	TGCA	3 cut(s)	136, 479, 692
HpyF3I	CTNAG	3 cut(s)	99, 311, 460
HpySE526I	ACGT	3 cut(s)	7, 20, 304
Hsp92II	CATG	3 cut(s)	152, 701, 726
HspAI	GCGC	1 cut(s)	665
Kzo9I	GATC	5 cut(s)	43, 164, 215, 398, 494
LmnI	GCTCC	2 cut(s)	185, 274
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	2 cut(s)	345, 652
MabI	ACCWGGT	1 cut(s)	139
MaeI	CTAG	3 cut(s)	593, 614, 620
MaeII	ACGT	3 cut(s)	7, 20, 304
MaeIII	GTNAC	3 cut(s)	3, 425, 806
MalI	GATC	5 cut(s)	45, 166, 217, 400, 496
MboI	GATC	5 cut(s)	43, 164, 215, 398, 494
MboII	GAAGA	4 cut(s)	221, 352, 484, 620
MflI	RGATCY	2 cut(s)	164, 494
MhlI	GDGCHC	3 cut(s)	444, 592, 797
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	4 cut(s)	26, 404, 788, 857
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	3 cut(s)	192, 257, 696
MnlI	CCTC	6 cut(s)	176, 306, 335, 458, 567, 614
Mox20I	TGGCCA	1 cut(s)	831
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	5 cut(s)	56, 242, 251, 651, 855
Msp20I	TGGCCA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	2 cut(s)	189, 897
MspR9I	CCNGG	4 cut(s)	141, 213, 804, 898
MvaI	CCWGG	3 cut(s)	141, 213, 804
NciI	CCSGG	1 cut(s)	898
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	5 cut(s)	43, 164, 215, 398, 494
NlaIII	CATG	3 cut(s)	152, 701, 726
NlaIV	GGNNCC	5 cut(s)	166, 187, 506, 535, 775
NmuCI	GTSAC	1 cut(s)	806
PfeI	GAWTC	2 cut(s)	633, 719
PkrI	GCNGC	2 cut(s)	88, 761
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
Psp124BI	GAGCTC	1 cut(s)	592
Psp6I	CCWGG	3 cut(s)	139, 211, 802
PspGI	CCWGG	3 cut(s)	139, 211, 802
PspN4I	GGNNCC	5 cut(s)	166, 187, 506, 535, 775
PspPI	GGNCC	4 cut(s)	143, 315, 737, 899
PsuI	RGATCY	2 cut(s)	164, 494
SacI	GAGCTC	1 cut(s)	592
SaqAI	TTAA	5 cut(s)	56, 242, 251, 651, 855
SatI	GCNGC	2 cut(s)	87, 760
Sau3AI	GATC	5 cut(s)	43, 164, 215, 398, 494
Sau96I	GGNCC	4 cut(s)	143, 315, 737, 899
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	4 cut(s)	141, 213, 804, 898
SduI	GDGCHC	3 cut(s)	444, 592, 797
SexAI	ACCWGGT	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	345, 652
SinI	GGWCC	3 cut(s)	143, 315, 737
Sse9I	AATT	4 cut(s)	26, 404, 788, 857
SsiI	CCGC	3 cut(s)	318, 759, 762
SspI	AATATT	2 cut(s)	641, 648
SspMI	CTAG	3 cut(s)	593, 614, 620
SstI	GAGCTC	1 cut(s)	592
StyD4I	CCNGG	4 cut(s)	139, 211, 802, 896
TaaI	ACNGT	3 cut(s)	436, 533, 918
TaiI	ACGT	3 cut(s)	10, 23, 307
TaqI	TCGA	2 cut(s)	606, 836
TasI	AATT	4 cut(s)	26, 404, 788, 857
TauI	GCSGC	1 cut(s)	762
TfiI	GAWTC	2 cut(s)	633, 719
Tru1I	TTAA	5 cut(s)	56, 242, 251, 651, 855
Tru9I	TTAA	5 cut(s)	56, 242, 251, 651, 855
TseFI	GTSAC	1 cut(s)	806
TseI	GCWGC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	806
TspDTI	ATGAA	5 cut(s)	42, 92, 397, 711, 801
VpaK11BI	GGWCC	3 cut(s)	143, 315, 737
XapI	RAATTY	1 cut(s)	404
XspI	CTAG	3 cut(s)	593, 614, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.