Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

21489868 .. 21492394

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGAGTCCTGCTTACTGTGTTTTACTCCTTGTAACCGTTCTCAGTTTCAGCCCAGATAGCTGCTTCTGTGCTGCTCACCAATCCAAACCAGAACACAAGGCGGCCTTGTTTGTGTTTGGGGACTCACTCTTTGATTCTGGGAACAACAAATACCTCGATAATAATAGCTCTGCCGCTAATGCACCGGCAAATAGGCCGCCGTACGGAGAAACCTACTTCAAGCACGCCACTGGTCGGTATTCCGATGGCCGCGTTGTCCCCGATTTTATAGCTCAGTTTGCAAAGCTTCCTTTTCCACCACCATATCTGCAACCTGGTGCACATAACTTTACAGACGGGGTCAGTTTTGCTTCTGGTGGAGCTGGTGTTATTCCCGGAGATTTCGGAGCGATAGACTTTCCTACTCAACTGAGCTATTTTAAGGCCATGGAGAAGTCACTGGGGCAGAAACTGGGTGATAAGGAAACCAAGAAGTTGCTGGGCACAGCTGTTTATTTGTTCAGCATTGGAGGAAATGACTACTTTAGCTTCGCTTCTAAAAACCCAAATGCTCCACAGATCTACAAGAGACAGCATGTAGCAATGGTGATCGGAAACTTGACCAGTGTGGTCAAAGAAATATATAATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTAGGACCTCTGGGATGCACACCGGGATCGAAAGCAGCGAATCCTGAACTAGGTGGTAAATGTTATGAAGAATCATTAACACTAGCCAGACTCCACAACAGAGCTCTATTCATTGCCTTCAAAAAGTTAGAGAAGAGCTTACCAGGATTCAAATTCTCCATATTTGACTACTACAATGCACTTGGGGACAGAATCTTCAACCCTTCAAAATATGGTTTCAAGGTTGGGAAGGCTGCTTGTTGTGGCAGTGGACCATATAGGGGGAAAAATTGTGGTGGGGGAAGCAATGGGACAGCATATGAACTATGCAGCAATCCCAGTGAGTATGTGTGGTTTGATGGAGCTCATACAACTGAAAGTGCCAACCACCAAGTAGCTGAACTTATATGGAATGGACCACAAAATTTCACAGGGCCTTACACTGTGAAAGAACTATTTGACCTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

369

Amino Acids

39.91

Weight (kDa)

8.69

Isoelectric Point (pI)

26.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 349	9.4e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	255
AciI	CCGC	4 cut(s)	104, 177, 200, 253
AclWI	GGATC	1 cut(s)	694
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	812, 1063
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	4 cut(s)	206, 237, 710, 920
AgsI	TTSAA	6 cut(s)	223, 781, 811, 859, 867, 880
AjnI	CCWGG	2 cut(s)	316, 802
Alw21I	GWGCWC	3 cut(s)	325, 766, 1006
Alw26I	GTCTC	1 cut(s)	565
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	1 cut(s)	694
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	5 cut(s)	105, 197, 250, 426, 1073
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	5 cut(s)	63, 74, 695, 893, 969
ApoI	RAATTY	2 cut(s)	812, 1063
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspS9I	GGNCC	4 cut(s)	665, 911, 1055, 1073
AsuC2I	CCSGG	2 cut(s)	378, 684
AsuHPI	GGTGA	3 cut(s)	71, 470, 601
AvaII	GGWCC	3 cut(s)	665, 911, 1055
BaeGI	GKGCMC	2 cut(s)	325, 488
BanII	GRGCYC	2 cut(s)	766, 1006
Bbv12I	GWGCWC	3 cut(s)	325, 766, 1006
BbvI	GCAGC	5 cut(s)	50, 61, 707, 880, 981
BccI	CCATC	2 cut(s)	242, 992
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	318, 804
BcnI	CCSGG	2 cut(s)	378, 684
BcoDI	GTCTC	1 cut(s)	565
BfaI	CTAG	2 cut(s)	710, 743
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	9 cut(s)	64, 75, 105, 177, 200, 253, 696, 894, 970
BlsI	GCNGC	9 cut(s)	65, 76, 106, 178, 201, 254, 697, 895, 971
Bme1390I	CCNGG	4 cut(s)	318, 378, 684, 804
Bme18I	GGWCC	3 cut(s)	665, 911, 1055
BmgT120I	GGNCC	4 cut(s)	665, 911, 1055, 1073
BmrFI	CCNGG	4 cut(s)	318, 378, 684, 804
BmrI	ACTGGG	3 cut(s)	452, 464, 972
BmsI	GCATC	1 cut(s)	665
BmuI	ACTGGG	3 cut(s)	452, 464, 972
BpuMI	CCSGG	2 cut(s)	378, 684
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 237, 710, 920
Bse118I	RCCGGY	1 cut(s)	187
Bse1I	ACTGG	5 cut(s)	238, 447, 459, 606, 978
Bse3DI	GCAATG	3 cut(s)	591, 771, 952
BseBI	CCWGG	2 cut(s)	318, 804
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	680
BseLI	CCNNNNNNNGG	4 cut(s)	206, 237, 710, 920
BseMI	GCAATG	3 cut(s)	591, 771, 952
BseMII	CTCAG	3 cut(s)	58, 290, 404
BseNI	ACTGG	5 cut(s)	238, 447, 459, 606, 978
BseSI	GKGCMC	2 cut(s)	325, 488
BseXI	GCAGC	5 cut(s)	50, 61, 707, 880, 981
BseYI	CCCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	255
BshFI	GGCC	5 cut(s)	107, 199, 252, 428, 1075
BsiHKAI	GWGCWC	3 cut(s)	325, 766, 1006
BsiSI	CCGG	3 cut(s)	188, 378, 683
BsiWI	CGTACG	1 cut(s)	204
BslFI	GGGAC	4 cut(s)	137, 245, 860, 964
BslI	CCNNNNNNNGG	4 cut(s)	206, 237, 710, 920
BsmAI	GTCTC	1 cut(s)	565
BsmFI	GGGAC	4 cut(s)	137, 245, 860, 964
BsnI	GGCC	5 cut(s)	107, 199, 252, 428, 1075
Bsp1286I	GDGCHC	4 cut(s)	325, 488, 766, 1006
Bsp143I	GATC	3 cut(s)	561, 591, 686
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	104, 177, 200, 253
BspANI	GGCC	5 cut(s)	107, 199, 252, 428, 1075
BspCNI	CTCAG	3 cut(s)	57, 289, 405
BspFNI	CGCG	1 cut(s)	255
BspPI	GGATC	1 cut(s)	694
BspQI	GCTCTTC	1 cut(s)	788
BsrDI	GCAATG	3 cut(s)	591, 771, 952
BsrFI	RCCGGY	1 cut(s)	187
BsrI	ACTGG	5 cut(s)	238, 447, 459, 606, 978
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	3 cut(s)	561, 591, 686
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	318, 804
Bst4CI	ACNGT	3 cut(s)	20, 40, 1084
Bst6I	CTCTTC	1 cut(s)	788
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	44, 276, 413
BstDSI	CCRYGG	1 cut(s)	429
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	1 cut(s)	680
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	3 cut(s)	564, 594, 689
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	3 cut(s)	561, 591, 686
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 60, 182, 281
BstNI	CCWGG	2 cut(s)	318, 804
BstNSI	RCATGY	1 cut(s)	581
BstSCI	CCNGG	4 cut(s)	316, 376, 682, 802
BstSLI	GKGCMC	2 cut(s)	325, 488
BstUI	CGCG	1 cut(s)	255
BstV1I	GCAGC	5 cut(s)	50, 61, 707, 880, 981
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	5 cut(s)	107, 199, 252, 428, 1075
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	680
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	6 cut(s)	231, 440, 613, 913, 985, 1080
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	665, 911, 1055, 1073
CsiI	ACCWGGT	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	2 cut(s)	430, 578
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	3 cut(s)	44, 276, 413
DpnI	GATC	3 cut(s)	563, 593, 688
DpnII	GATC	3 cut(s)	561, 591, 686
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Ecl136II	GAGCTC	2 cut(s)	764, 1004
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	2 cut(s)	766, 1006
Eco47I	GGWCC	3 cut(s)	665, 911, 1055
Eco53kI	GAGCTC	2 cut(s)	764, 1004
EcoICRI	GAGCTC	2 cut(s)	764, 1004
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO109I	RGGNCCY	2 cut(s)	665, 1073
EcoRII	CCWGG	2 cut(s)	316, 802
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	2 cut(s)	766, 1006
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	2 cut(s)	433, 581
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	4 cut(s)	137, 245, 860, 964
FatI	CATG	2 cut(s)	429, 577
FauNDI	CATATG	1 cut(s)	958
Fnu4HI	GCNGC	9 cut(s)	64, 75, 105, 177, 200, 253, 696, 894, 970
FokI	GGATG	1 cut(s)	687
FriOI	GRGCYC	2 cut(s)	766, 1006
Fsp4HI	GCNGC	9 cut(s)	64, 75, 105, 177, 200, 253, 696, 894, 970
FspBI	CTAG	2 cut(s)	710, 743
GluI	GCNGC	9 cut(s)	64, 75, 105, 177, 200, 253, 696, 894, 970
GsaI	CCCAGC	1 cut(s)	485
HaeIII	GGCC	5 cut(s)	107, 199, 252, 428, 1075
HapII	CCGG	3 cut(s)	188, 378, 683
Hin1II	CATG	2 cut(s)	433, 581
HindIII	AAGCTT	1 cut(s)	287
HinfI	GANTC	8 cut(s)	7, 125, 137, 700, 731, 750, 807, 852
HpaII	CCGG	3 cut(s)	188, 378, 683
HphI	GGTGA	3 cut(s)	71, 470, 601
Hpy166II	GTNNAC	2 cut(s)	323, 911
Hpy188I	TCNGA	4 cut(s)	247, 389, 596, 657
Hpy188III	TCNNGA	1 cut(s)	704
Hpy8I	GTNNAC	2 cut(s)	323, 911
HpyAV	CCTTC	4 cut(s)	633, 787, 873, 883
HpyCH4III	ACNGT	3 cut(s)	20, 40, 1084
HpyCH4V	TGCA	8 cut(s)	185, 284, 313, 323, 650, 678, 839, 969
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 60, 182, 281
HpyF3I	CTNAG	3 cut(s)	44, 276, 413
Hsp92II	CATG	2 cut(s)	433, 581
Kzo9I	GATC	3 cut(s)	561, 591, 686
LguI	GCTCTTC	1 cut(s)	788
LmnI	GCTCC	4 cut(s)	362, 389, 559, 1001
Lsp1109I	GCAGC	5 cut(s)	50, 61, 707, 880, 981
LweI	GCATC	1 cut(s)	665
MabI	ACCWGGT	1 cut(s)	316
MaeI	CTAG	2 cut(s)	710, 743
MaeIII	GTNAC	2 cut(s)	34, 438
MalI	GATC	3 cut(s)	563, 593, 688
MboI	GATC	3 cut(s)	561, 591, 686
MboII	GAAGA	3 cut(s)	740, 805, 847
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	4 cut(s)	325, 488, 766, 1006
MluCI	AATT	5 cut(s)	628, 645, 812, 928, 1063
MlyI	GAGTC	3 cut(s)	16, 119, 744
MnlI	CCTC	4 cut(s)	167, 506, 629, 678
MseI	TTAA	3 cut(s)	423, 737, 1108
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	3 cut(s)	188, 378, 683
MspR9I	CCNGG	4 cut(s)	318, 378, 684, 804
MvaI	CCWGG	2 cut(s)	318, 804
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	4 cut(s)	11, 60, 182, 281
NciI	CCSGG	2 cut(s)	378, 684
NcoI	CCATGG	1 cut(s)	429
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	3 cut(s)	561, 591, 686
NlaIII	CATG	2 cut(s)	433, 581
NmuCI	GTSAC	1 cut(s)	438
NspI	RCATGY	1 cut(s)	581
PciSI	GCTCTTC	1 cut(s)	788
PcsI	WCGNNNNNNNCGW	1 cut(s)	695
PfeI	GAWTC	5 cut(s)	137, 700, 731, 807, 852
Pfl23II	CGTACG	1 cut(s)	204
PflFI	GACNNNGTC	1 cut(s)	341
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	9 cut(s)	65, 76, 106, 178, 201, 254, 697, 895, 971
PleI	GAGTC	3 cut(s)	15, 119, 744
PpsI	GAGTC	3 cut(s)	15, 119, 744
PpuMI	RGGWCCY	1 cut(s)	665
Psp124BI	GAGCTC	2 cut(s)	766, 1006
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	2 cut(s)	316, 802
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	316, 802
PspLI	CGTACG	1 cut(s)	204
PspPI	GGNCC	4 cut(s)	665, 911, 1055, 1073
PspPPI	RGGWCCY	1 cut(s)	665
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	341
PvuII	CAGCTG	1 cut(s)	491
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
SacI	GAGCTC	2 cut(s)	766, 1006
SapI	GCTCTTC	1 cut(s)	788
SaqAI	TTAA	3 cut(s)	423, 737, 1108
SatI	GCNGC	9 cut(s)	64, 75, 105, 177, 200, 253, 696, 894, 970
Sau3AI	GATC	3 cut(s)	561, 591, 686
Sau96I	GGNCC	4 cut(s)	665, 911, 1055, 1073
SchI	GAGTC	3 cut(s)	16, 119, 744
ScrFI	CCNGG	4 cut(s)	318, 378, 684, 804
SduI	GDGCHC	4 cut(s)	325, 488, 766, 1006
SexAI	ACCWGGT	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	665
SinI	GGWCC	3 cut(s)	665, 911, 1055
Sse9I	AATT	5 cut(s)	628, 645, 812, 928, 1063
SsiI	CCGC	4 cut(s)	104, 177, 200, 253
SspMI	CTAG	2 cut(s)	710, 743
SstI	GAGCTC	2 cut(s)	766, 1006
StyD4I	CCNGG	4 cut(s)	316, 376, 682, 802
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	3 cut(s)	20, 40, 1084
TaqI	TCGA	2 cut(s)	159, 689
TasI	AATT	5 cut(s)	628, 645, 812, 928, 1063
TauI	GCSGC	4 cut(s)	107, 179, 202, 255
TfiI	GAWTC	5 cut(s)	137, 700, 731, 807, 852
Tru1I	TTAA	3 cut(s)	423, 737, 1108
Tru9I	TTAA	3 cut(s)	423, 737, 1108
TscAI	CASTG	6 cut(s)	238, 447, 613, 913, 985, 1087
TseFI	GTSAC	1 cut(s)	438
TseI	GCWGC	5 cut(s)	63, 74, 695, 893, 969
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	3 cut(s)	741, 760, 975
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	6 cut(s)	238, 447, 613, 913, 985, 1087
Tth111I	GACNNNGTC	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	321
VpaK11BI	GGWCC	3 cut(s)	665, 911, 1055
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	2 cut(s)	812, 1063
XceI	RCATGY	1 cut(s)	581
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XspI	CTAG	2 cut(s)	710, 743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.