Rmu_sc0001880.1_g000013

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001880.1
Physical Location & Seq
Forward (+)
61747 .. 63356
1610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001880.1_g000013.1.cds

Sequence Viewer

Length: 1152 bp
atggccagccttagctacattgtttatgtgttggtaagccttttgaacccaattagctaccttctttatggtcatgatcaattcaactataaacctgcagacgataatgaggtacaaaagaaggccttgtttgtgtttggagactcgctgtttgatcctggcaacgatcaatacctccctaatgttaccgtagaagattacccagcaacaacctggccatatggagaaaccttctttcaccatcccaacggaagactttcagatggccgtatcgtcccggacttcatcgctaattttgcgaacttgcgtatgattccaccctacctgcaaccagatccaaaagattttactgatggagccagctttgcttcagctggagctggagttctagttgaaactgatccaggaactataaaccttccattgcagttaagctattttaagaacgtgacggagttgctgcaagagcaactgggtgatgaagaagccaagaagttgctggggagcgctgtgtatttgattagcatgggaggcaatgattattttaccttctacgccaaataccaagaaaatgccaccgagtccctccagcaggaatacatagaaattgtgatcggcaacttaaccactgtgctccaaggaatatacgacttagggggaaggaaaatcgcatttcaaaatgccggacctcttgggtgcttacctcacgcaaaacaatcatacgattcccaccttgttcgtgggtgcgttgaagggctccagagtctagcgaggcagcacaacaaagctctagctagtgtccttaaagagctagagagccaactaccgggattcaaatattcaatatttgagtactatgatgcacttggcgaccgagtacttaaccccgctaaatacgttatggtgtattatgaaggctttactaatgggacagatgcgtgttgcggtagaggggcatacagaggttctgattgcggtgggcttaatggaacagtaccatatgagttatgcagtaaccctggtgacagtgtgtggtttgatggtggtcatacatctgaaagggcaaacctgcagttagctcagctgatatggagtggaacaccaaatgtgacggggccttataatgtcaaacagctttttgaacaagaatga

Protein Analysis

383

Amino Acids

42.38

Weight (kDa)

4.7

Isoelectric Point (pI)

33.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1122
Acc36I ACCTGC 3 cut(s) 103, 333, 1077
AciI CCGC 3 cut(s) 888, 945, 975
AclWI GGATC 3 cut(s) 149, 329, 395
AcoI YGGCCR 3 cut(s) 3, 215, 265
AcuI CTGAAG 1 cut(s) 354
AfaI GTAC 4 cut(s) 114, 854, 879, 996
AfeI AGCGCT 1 cut(s) 508
AfiI CCNNNNNNNGG 2 cut(s) 592, 826
AgsI TTSAA 8 cut(s) 46, 85, 395, 677, 752, 835, 843, 1142
AjnI CCWGG 4 cut(s) 157, 212, 403, 1018
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
Alw21I GWGCWC 1 cut(s) 636
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 149, 329, 395
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 5 cut(s) 3, 123, 215, 265, 1115
ApeKI GCWGC 2 cut(s) 460, 775
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 1 cut(s) 256
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 686, 1115
AsuC2I CCSGG 2 cut(s) 278, 828
AsuHPI GGTGA 3 cut(s) 230, 488, 1034
AvaII GGWCC 1 cut(s) 686
BalI TGGCCA 2 cut(s) 5, 217
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 447, 787
BccI CCATC 4 cut(s) 249, 257, 347, 1034
BceAI ACGGC 1 cut(s) 252
BciT130I CCWGG 4 cut(s) 159, 214, 405, 1020
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 2 cut(s) 278, 828
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 5 cut(s) 389, 767, 791, 795, 812
BfmI CTRYAG 2 cut(s) 96, 1070
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 3 cut(s) 103, 333, 1077
BisI GCNGC 2 cut(s) 461, 776
BlpI GCTNAGC 1 cut(s) 1080
BlsI GCNGC 2 cut(s) 462, 777
BmcAI AGTACT 2 cut(s) 854, 879
Bme1390I CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1020
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 2 cut(s) 686, 1115
BmiI GGNNCC 3 cut(s) 358, 758, 1116
BmrFI CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1020
BmrI ACTGGG 1 cut(s) 482
BmsI GCATC 2 cut(s) 850, 925
BmuI ACTGGG 1 cut(s) 482
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 4 cut(s) 396, 402, 572, 743
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 1080
BpuMI CCSGG 2 cut(s) 278, 828
BsaJI CCNNGG 2 cut(s) 637, 1018
BsaXI ACNNNNNCTCC 4 cut(s) 369, 375, 399, 405
Bsc4I CCNNNNNNNGG 2 cut(s) 592, 826
Bse1I ACTGG 1 cut(s) 477
Bse3DI GCAATG 2 cut(s) 422, 541
BseBI CCWGG 4 cut(s) 159, 214, 405, 1020
BseDI CCNNGG 2 cut(s) 637, 1018
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 592, 826
BseMI GCAATG 2 cut(s) 422, 541
BseMII CTCAG 1 cut(s) 1094
BseNI ACTGG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 447, 787
BseYI CCCAGC 2 cut(s) 202, 499
Bsh1285I CGRYCG 1 cut(s) 874
BshFI GGCC 5 cut(s) 5, 125, 217, 267, 1117
BsiEI CGRYCG 1 cut(s) 874
BsiHKAI GWGCWC 1 cut(s) 636
BsiSI CCGG 3 cut(s) 278, 684, 827
BslFI GGGAC 3 cut(s) 260, 568, 943
BslI CCNNNNNNNGG 2 cut(s) 592, 826
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 3 cut(s) 260, 568, 943
BsnI GGCC 5 cut(s) 5, 125, 217, 267, 1117
Bsp1286I GDGCHC 2 cut(s) 636, 759
Bsp143I GATC 6 cut(s) 76, 154, 166, 334, 400, 612
Bsp1720I GCTNAGC 1 cut(s) 1080
BspACI CCGC 3 cut(s) 888, 945, 975
BspANI GGCC 5 cut(s) 5, 125, 217, 267, 1117
BspCNI CTCAG 1 cut(s) 1093
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 3 cut(s) 358, 758, 1116
BspMAI CTGCAG 2 cut(s) 100, 1074
BspMI ACCTGC 3 cut(s) 103, 333, 1077
BspPI GGATC 3 cut(s) 149, 329, 395
BsrDI GCAATG 2 cut(s) 422, 541
BsrI ACTGG 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 637, 1018
BssMI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 4 cut(s) 159, 214, 405, 1020
Bst4CI ACNGT 4 cut(s) 190, 631, 994, 1028
BstC8I GCNNGC 2 cut(s) 7, 361
BstDEI CTNAG 3 cut(s) 11, 652, 1080
BstENI CCTNNNNNAGG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 6 cut(s) 79, 157, 169, 337, 403, 615
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
BstMCI CGRYCG 1 cut(s) 874
BstMWI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
BstNI CCWGG 4 cut(s) 159, 214, 405, 1020
BstSCI CCNGG 6 cut(s) 157, 212, 276, 403, 826, 1018
BstSFI CTRYAG 2 cut(s) 96, 1070
BstV1I GCAGC 2 cut(s) 447, 787
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 5 cut(s) 5, 125, 217, 267, 1117
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 2 cut(s) 627, 1033
BveI ACCTGC 3 cut(s) 103, 333, 1077
Cac8I GCNNGC 2 cut(s) 7, 361
CciI TCATGA 1 cut(s) 73
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 686, 1115
Csp6I GTAC 4 cut(s) 113, 853, 878, 995
CviAII CATG 2 cut(s) 74, 526
CviQI GTAC 4 cut(s) 113, 853, 878, 995
DdeI CTNAG 3 cut(s) 11, 652, 1080
DpnI GATC 6 cut(s) 78, 156, 168, 336, 402, 614
DpnII GATC 6 cut(s) 76, 154, 166, 334, 400, 612
EaeI YGGCCR 3 cut(s) 3, 215, 265
Eco130I CCWWGG 1 cut(s) 637
Eco147I AGGCCT 1 cut(s) 125
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 686
Eco47III AGCGCT 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 354
EcoNI CCTNNNNNAGG 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 4 cut(s) 157, 212, 403, 1018
EcoT14I CCWWGG 1 cut(s) 637
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 2 cut(s) 77, 529
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 3 cut(s) 260, 568, 943
FatI CATG 2 cut(s) 73, 525
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 2 cut(s) 220, 1000
FbaI TGATCA 1 cut(s) 76
Fnu4HI GCNGC 2 cut(s) 461, 776
FokI GGATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 2 cut(s) 461, 776
FspBI CTAG 5 cut(s) 389, 767, 791, 795, 812
GlaI GCGC 1 cut(s) 508
GluI GCNGC 2 cut(s) 461, 776
GsaI CCCAGC 2 cut(s) 206, 503
GsuI CTGGAG 4 cut(s) 396, 402, 572, 743
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 5 cut(s) 5, 125, 217, 267, 1117
HapII CCGG 3 cut(s) 278, 684, 827
HhaI GCGC 1 cut(s) 509
Hin1II CATG 2 cut(s) 77, 529
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HinfI GANTC 6 cut(s) 143, 313, 581, 725, 763, 831
HpaII CCGG 3 cut(s) 278, 684, 827
HphI GGTGA 3 cut(s) 230, 488, 1034
Hpy188I TCNGA 3 cut(s) 262, 970, 1057
Hpy188III TCNNGA 2 cut(s) 74, 760
HpyAV CCTTC 8 cut(s) 71, 115, 241, 428, 559, 654, 746, 908
HpyCH4III ACNGT 4 cut(s) 190, 631, 994, 1028
HpyCH4IV ACGT 2 cut(s) 447, 897
HpyCH4V TGCA 7 cut(s) 98, 328, 427, 463, 863, 1011, 1072
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
HpyF3I CTNAG 3 cut(s) 11, 652, 1080
HpySE526I ACGT 2 cut(s) 447, 897
Hsp92II CATG 2 cut(s) 77, 529
HspAI GCGC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 6 cut(s) 76, 154, 166, 334, 400, 612
LmnI GCTCC 5 cut(s) 356, 377, 504, 639, 762
Lsp1109I GCAGC 2 cut(s) 447, 787
LweI GCATC 2 cut(s) 850, 925
MaeI CTAG 5 cut(s) 389, 767, 791, 795, 812
MaeII ACGT 2 cut(s) 447, 897
MaeIII GTNAC 5 cut(s) 184, 448, 1013, 1022, 1108
MalI GATC 6 cut(s) 78, 156, 168, 336, 402, 614
MboI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
MboII GAAGA 3 cut(s) 206, 264, 494
MflI RGATCY 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 636, 759
MlsI TGGCCA 2 cut(s) 5, 217
MluCI AATT 4 cut(s) 51, 80, 292, 606
MluNI TGGCCA 2 cut(s) 5, 217
MlyI GAGTC 3 cut(s) 137, 590, 772
MnlI CCTC 9 cut(s) 103, 185, 524, 596, 699, 714, 765, 944, 956
Mox20I TGGCCA 2 cut(s) 5, 217
MroXI GAANNNNTTC 1 cut(s) 256
MscI TGGCCA 2 cut(s) 5, 217
MseI TTAA 6 cut(s) 431, 441, 623, 804, 882, 984
Msp20I TGGCCA 2 cut(s) 5, 217
MspA1I CMGCKG 2 cut(s) 374, 1084
MspI CCGG 3 cut(s) 278, 684, 827
MspR9I CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1020
MvaI CCWGG 4 cut(s) 159, 214, 405, 1020
MwoI GCNNNNNNNGC 4 cut(s) 296, 365, 466, 531
NciI CCSGG 2 cut(s) 278, 828
NdeI CATATG 2 cut(s) 220, 1000
NdeII GATC 6 cut(s) 76, 154, 166, 334, 400, 612
NlaIII CATG 2 cut(s) 77, 529
NlaIV GGNNCC 3 cut(s) 358, 758, 1116
NmuCI GTSAC 3 cut(s) 448, 1022, 1108
PagI TCATGA 1 cut(s) 73
PceI AGGCCT 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 313, 725, 831
PfoI TCCNGGA 2 cut(s) 276, 403
PkrI GCNGC 2 cut(s) 462, 777
PleI GAGTC 3 cut(s) 137, 589, 771
PpsI GAGTC 3 cut(s) 137, 589, 771
PsiI TTATAA 1 cut(s) 1122
Psp6I CCWGG 4 cut(s) 157, 212, 403, 1018
PspFI CCCAGC 2 cut(s) 202, 499
PspGI CCWGG 4 cut(s) 157, 212, 403, 1018
PspN4I GGNNCC 3 cut(s) 358, 758, 1116
PspPI GGNCC 2 cut(s) 686, 1115
PstI CTGCAG 2 cut(s) 100, 1074
PsuI RGATCY 1 cut(s) 334
PvuII CAGCTG 2 cut(s) 374, 1084
RsaI GTAC 4 cut(s) 114, 854, 879, 996
RsaNI GTAC 4 cut(s) 113, 853, 878, 995
SaqAI TTAA 6 cut(s) 431, 441, 623, 804, 882, 984
SatI GCNGC 2 cut(s) 461, 776
Sau3AI GATC 6 cut(s) 76, 154, 166, 334, 400, 612
Sau96I GGNCC 2 cut(s) 686, 1115
ScaI AGTACT 2 cut(s) 854, 879
SchI GAGTC 3 cut(s) 137, 590, 772
ScrFI CCNGG 6 cut(s) 159, 214, 278, 405, 828, 1020
SduI GDGCHC 2 cut(s) 636, 759
SfaNI GCATC 2 cut(s) 850, 925
SfcI CTRYAG 2 cut(s) 96, 1070
SinI GGWCC 1 cut(s) 686
Sse9I AATT 4 cut(s) 51, 80, 292, 606
SseBI AGGCCT 1 cut(s) 125
SsiI CCGC 3 cut(s) 888, 945, 975
SspI AATATT 2 cut(s) 839, 846
SspMI CTAG 5 cut(s) 389, 767, 791, 795, 812
StuI AGGCCT 1 cut(s) 125
StyD4I CCNGG 6 cut(s) 157, 212, 276, 403, 826, 1018
StyI CCWWGG 1 cut(s) 637
TaaI ACNGT 4 cut(s) 190, 631, 994, 1028
TaiI ACGT 2 cut(s) 450, 900
TaqII GACCGA 1 cut(s) 888
TasI AATT 4 cut(s) 51, 80, 292, 606
TatI WGTACW 2 cut(s) 852, 877
TfiI GAWTC 3 cut(s) 313, 725, 831
Tru1I TTAA 6 cut(s) 431, 441, 623, 804, 882, 984
Tru9I TTAA 6 cut(s) 431, 441, 623, 804, 882, 984
TscAI CASTG 2 cut(s) 634, 1033
TseFI GTSAC 3 cut(s) 448, 1022, 1108
TseI GCWGC 2 cut(s) 460, 775
Tsp45I GTSAC 3 cut(s) 448, 1022, 1108
TspDTI ATGAA 3 cut(s) 274, 495, 927
TspGWI ACGGA 2 cut(s) 264, 467
TspRI CASTG 2 cut(s) 634, 1033
VpaK11BI GGWCC 1 cut(s) 686
XagI CCTNNNNNAGG 1 cut(s) 590
XcmI CCANNNNNNNNNTGG 3 cut(s) 210, 496, 737
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 5 cut(s) 389, 767, 791, 795, 812
ZrmI AGTACT 2 cut(s) 854, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.