Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Forward (+)

50880806 .. 50881956

Gene Structure 1151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0398600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGTAAGGGAACTGGAAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGCGTGAGGTGTGGCCGTCGCAGCTTCCATCTCCAGAAGAGTCGCTGCTCCGCTTGTGCCTACCCAGCTGCCCGCACCAGGAAATTCAACTGGAGTGTGAAGGCCATCAGGAGGAAGACCACGGGGACCGGAAGGATGAGGTATCTGCGCAATGTCCCACGCAGGTTCAAGAGCGGTTTCAGAGAAGGTACCGAAGCTGCACCAAGGAAGAAGGGAGCTGCAGCTTCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

95

Amino Acids

10.69

Weight (kDa)

11.96

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L37e	PF01907	2 - 53	1.4e-26	Ribosomal protein L37e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	228
AciI	CCGC	3 cut(s)	105, 127, 228
AcoI	YGGCCR	1 cut(s)	67
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	2 cut(s)	132, 165
AgsI	TTSAA	2 cut(s)	142, 223
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	5 cut(s)	78, 122, 251, 272, 278
AluI	AGCT	5 cut(s)	78, 122, 251, 272, 278
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	67, 156
ApeKI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
ApoI	RAATTY	1 cut(s)	137
Asp718I	GGTACC	1 cut(s)	242
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BccI	CCATC	2 cut(s)	90, 167
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	273
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
BlsI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	181, 244
BmrFI	CCNGG	1 cut(s)	133
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	2 cut(s)	71, 166
BsaJI	CCNNGG	2 cut(s)	174, 257
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 165
Bse1I	ACTGG	2 cut(s)	19, 149
Bse3DI	GCAATG	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	174, 257
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	132, 165
BseMI	GCAATG	1 cut(s)	211
BseNI	ACTGG	2 cut(s)	19, 149
BseRI	GAGGAG	1 cut(s)	46
BseXI	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BseYI	CCCAGC	1 cut(s)	118
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	69, 158
BshNI	GGYRCC	1 cut(s)	242
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	193, 194
BslI	CCNNNNNNNGG	2 cut(s)	132, 165
BsmFI	GGGAC	2 cut(s)	193, 194
BsnI	GGCC	2 cut(s)	69, 158
BspACI	CCGC	3 cut(s)	105, 127, 228
BspANI	GGCC	2 cut(s)	69, 158
BspLI	GGNNCC	2 cut(s)	181, 244
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	242
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	19, 149
BssECI	CCNNGG	2 cut(s)	174, 257
BssT1I	CCWWGG	1 cut(s)	257
Bst2UI	CCWGG	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	127
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	86, 87, 109, 238, 259
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	69, 158
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	243
CviJI	RGCY	7 cut(s)	69, 78, 122, 158, 251, 272, 278
CviKI_1	RGCY	7 cut(s)	69, 78, 122, 158, 251, 272, 278
CviQI	GTAC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	67
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaqI	GGGAC	2 cut(s)	193, 194
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
FspI	TGCGCA	1 cut(s)	203
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	2 cut(s)	71, 166
HaeIII	GGCC	2 cut(s)	69, 158
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	3 cut(s)	88, 163, 223
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	4 cut(s)	148, 180, 233, 259
HpyCH4V	TGCA	2 cut(s)	254, 275
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
HspAI	GCGC	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	246
LmnI	GCTCC	2 cut(s)	107, 269
LpnPI	CCDG	8 cut(s)	101, 118, 130, 132, 145, 148, 196, 202
Lsp1109I	GCAGC	5 cut(s)	86, 87, 109, 238, 259
MbiI	CCGCTC	1 cut(s)	228
MboII	GAAGA	3 cut(s)	103, 181, 274
MluCI	AATT	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	103
MnlI	CCTC	6 cut(s)	24, 27, 54, 62, 159, 186
MseI	TTAA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MwoI	GCNNNNNNNGC	3 cut(s)	75, 119, 281
NlaIV	GGNNCC	2 cut(s)	181, 244
NsbI	TGCGCA	1 cut(s)	203
PkrI	GCNGC	6 cut(s)	77, 101, 124, 253, 274, 277
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	131
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	181, 244
PspPI	GGNCC	1 cut(s)	180
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	286
SatI	GCNGC	6 cut(s)	76, 100, 123, 252, 273, 276
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	133
SetI	ASST	9 cut(s)	65, 80, 124, 197, 221, 244, 253, 274, 280
SfcI	CTRYAG	1 cut(s)	273
SinI	GGWCC	1 cut(s)	180
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	105, 127, 228
StyD4I	CCNGG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	257
TasI	AATT	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	286
Tru9I	TTAA	1 cut(s)	286
TseI	GCWGC	6 cut(s)	75, 99, 122, 251, 272, 275
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.