Rorug02G0398400

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
50874553 .. 50875353
801 bp
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UTR
Exon/CDS
Intron
Rorug02G0398400.1

Sequence Viewer

Length: 801 bp
ATGCTTTGGAAACAACTTTGGAAGGCTCCTGTTCCCGGTAAAGTTAAGATATGTGTTTGGAGAGCGGCTTCAAATACTTTTCCCACACACAGTAGGCTCAGTGAACGTGGTATTGATACTCAATGTCCTTTCTGTGATGAAGAAGTTGAATCCCCTCTTCATGCTCTTCGTGATTGCAGCCATGCAGCTTCGTTTCTTCAATTGGCTCAAATTCAATCTTCAGCTCCGGCCTCAAGTATTATTGATTGGTTAGCCTCCTCTTTTTCCCAATCTCCCACTACTTTTGCTACATTGCTATTGATTATTTGGGCTATATGGAGAAATCGGAATGCAAAAGTGTGGGATGGAGATGTCAAAATGGCCTCAGAAGCTGTCCCAATTACGTTAGGTTGGTGGGAGGAATATAAGACAACTCATACTGGAGTTCGAGTGCCAAGACCAGTGAGGAACGAGTCGTGGAAGAAACCTCATGTAGGTTTGGTCAAGCTTAATGTTGATGCTACCTTTGATAGTGCTACGGGCTATACTAGAGTTGGGGGGGTCTTTCGAGACTTCAATGGTTCTTGTCTTGGAGGATTCCGGCACTCCGTCAGGTTTTCAAACTCGACTAGGCATGGAGAACTTCTTGCCTTGTTGCAAGGGGTCGAACTGGCTATTGTCCATCACTTTGTTCCATTGATGGTGGAAACGGATTGCCAAGATTTGGTCAATGCCGTTGGGACTGCTAGTTTGGATTGGTCCGAGTTAGGTTTTCTGATGCATGATTTAAAGGAATTGTTGAGGGCTGCTTCTTCTGCCTAG

Protein Analysis

266

Amino Acids

29.6

Weight (kDa)

7.14

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 3 - 63 7.9e-13 zinc-binding in reverse transcriptase
RVT_3 PF13456 164 - 261 1.7e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 703
AccBSI CCGCTC 1 cut(s) 65
AciI CCGC 1 cut(s) 65
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 204
AfiI CCNNNNNNNGG 3 cut(s) 35, 473, 703
AgsI TTSAA 6 cut(s) 72, 149, 200, 215, 556, 600
AluBI AGCT 4 cut(s) 188, 224, 371, 487
AluI AGCT 4 cut(s) 188, 224, 371, 487
Alw26I GTCTC 1 cut(s) 543
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 228, 360
ApeKI GCWGC 3 cut(s) 177, 185, 785
ApoI RAATTY 1 cut(s) 210
ArsI GACNNNNNNTTYG 2 cut(s) 712, 744
AspS9I GGNCC 1 cut(s) 738
AsuC2I CCSGG 1 cut(s) 36
AvaII GGWCC 1 cut(s) 738
BbvI GCAGC 3 cut(s) 189, 197, 772
BccI CCATC 3 cut(s) 338, 669, 673
BceAI ACGGC 1 cut(s) 698
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 4 cut(s) 528, 609, 726, 799
BisI GCNGC 4 cut(s) 66, 178, 186, 786
BlsI GCNGC 4 cut(s) 67, 179, 187, 787
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 1 cut(s) 738
BmgT120I GGNCC 1 cut(s) 738
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 36
BmsI GCATC 2 cut(s) 487, 747
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 36
BsaXI ACNNNNNCTCC 2 cut(s) 414, 444
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 473, 703
Bse1I ACTGG 3 cut(s) 424, 440, 654
Bse3DI GCAATG 1 cut(s) 290
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 3 cut(s) 35, 473, 703
BseMI GCAATG 1 cut(s) 290
BseMII CTCAG 2 cut(s) 112, 378
BseNI ACTGG 3 cut(s) 424, 440, 654
BseRI GAGGAG 1 cut(s) 247
BseXI GCAGC 3 cut(s) 189, 197, 772
BshFI GGCC 2 cut(s) 230, 362
BsiSI CCGG 3 cut(s) 36, 227, 580
BslFI GGGAC 2 cut(s) 359, 733
BslI CCNNNNNNNGG 3 cut(s) 35, 473, 703
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 2 cut(s) 359, 733
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 230, 362
BspACI CCGC 1 cut(s) 65
BspANI GGCC 2 cut(s) 230, 362
BspCNI CTCAG 2 cut(s) 111, 377
BspLI GGNNCC 1 cut(s) 27
BspQI GCTCTTC 1 cut(s) 171
BsrBI CCGCTC 1 cut(s) 65
BsrDI GCAATG 1 cut(s) 290
BsrI ACTGG 3 cut(s) 424, 440, 654
Bst4CI ACNGT 1 cut(s) 92
Bst6I CTCTTC 2 cut(s) 162, 171
BstDEI CTNAG 2 cut(s) 98, 364
BstENI CCTNNNNNAGG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 349
BstMAI GTCTC 1 cut(s) 543
BstMWI GCNNNNNNNGC 2 cut(s) 368, 794
BstSCI CCNGG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 189, 197, 772
BsuRI GGCC 2 cut(s) 230, 362
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 2 cut(s) 106, 447
CaiI CAGNNNCTG 1 cut(s) 371
Cfr13I GGNCC 1 cut(s) 738
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 5 cut(s) 161, 182, 470, 614, 761
DdeI CTNAG 2 cut(s) 98, 364
DraI TTTAAA 1 cut(s) 768
Eam1104I CTCTTC 2 cut(s) 162, 171
EarI CTCTTC 2 cut(s) 162, 171
Eco47I GGWCC 1 cut(s) 738
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 762
FaeI CATG 5 cut(s) 164, 185, 473, 617, 764
FaqI GGGAC 2 cut(s) 359, 733
FatI CATG 5 cut(s) 160, 181, 469, 613, 760
Fnu4HI GCNGC 4 cut(s) 66, 178, 186, 786
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 4 cut(s) 66, 178, 186, 786
FspBI CTAG 4 cut(s) 528, 609, 726, 799
GluI GCNGC 4 cut(s) 66, 178, 186, 786
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 2 cut(s) 230, 362
HapII CCGG 3 cut(s) 36, 227, 580
Hin1II CATG 5 cut(s) 164, 185, 473, 617, 764
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 3 cut(s) 149, 452, 576
HpaII CCGG 3 cut(s) 36, 227, 580
Hpy166II GTNNAC 1 cut(s) 104
Hpy188I TCNGA 4 cut(s) 327, 367, 742, 756
Hpy188III TCNNGA 2 cut(s) 170, 548
Hpy8I GTNNAC 1 cut(s) 104
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 106, 383
HpyCH4V TGCA 5 cut(s) 177, 185, 332, 637, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 794
HpyF3I CTNAG 2 cut(s) 98, 364
HpySE526I ACGT 2 cut(s) 106, 383
Hsp92II CATG 5 cut(s) 164, 185, 473, 617, 764
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 31, 229
LpnPI CCDG 8 cut(s) 42, 49, 240, 405, 453, 577, 593, 635
Lsp1109I GCAGC 3 cut(s) 189, 197, 772
LweI GCATC 2 cut(s) 487, 747
MaeI CTAG 4 cut(s) 528, 609, 726, 799
MaeII ACGT 2 cut(s) 106, 383
MbiI CCGCTC 1 cut(s) 65
MboII GAAGA 7 cut(s) 149, 152, 158, 188, 210, 472, 783
MfeI CAATTG 1 cut(s) 200
MluCI AATT 4 cut(s) 200, 210, 378, 773
MlyI GAGTC 1 cut(s) 461
Mph1103I ATGCAT 1 cut(s) 762
MseI TTAA 3 cut(s) 45, 489, 767
MspI CCGG 3 cut(s) 36, 227, 580
MspR9I CCNGG 1 cut(s) 36
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 334
MwoI GCNNNNNNNGC 2 cut(s) 368, 794
NciI CCSGG 1 cut(s) 36
NlaIII CATG 5 cut(s) 164, 185, 473, 617, 764
NlaIV GGNNCC 1 cut(s) 27
NsiI ATGCAT 1 cut(s) 762
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 149, 576
PflMI CCANNNNNTGG 1 cut(s) 703
PkrI GCNGC 4 cut(s) 67, 179, 187, 787
PleI GAGTC 1 cut(s) 460
PpsI GAGTC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 738
PstNI CAGNNNCTG 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 3 cut(s) 45, 489, 767
SatI GCNGC 4 cut(s) 66, 178, 186, 786
Sau96I GGNCC 1 cut(s) 738
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 1 cut(s) 36
SfaNI GCATC 2 cut(s) 487, 747
SinI GGWCC 1 cut(s) 738
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 4 cut(s) 200, 210, 378, 773
SsiI CCGC 1 cut(s) 65
SspMI CTAG 4 cut(s) 528, 609, 726, 799
StyD4I CCNGG 1 cut(s) 34
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 2 cut(s) 109, 386
TaqI TCGA 4 cut(s) 427, 547, 605, 645
TasI AATT 4 cut(s) 200, 210, 378, 773
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 2 cut(s) 149, 576
Tru1I TTAA 3 cut(s) 45, 489, 767
Tru9I TTAA 3 cut(s) 45, 489, 767
TscAI CASTG 2 cut(s) 106, 447
TseI GCWGC 3 cut(s) 177, 185, 785
TspDTI ATGAA 2 cut(s) 149, 153
TspGWI ACGGA 2 cut(s) 577, 704
TspRI CASTG 2 cut(s) 106, 447
Van91I CCANNNNNTGG 1 cut(s) 703
VpaK11BI GGWCC 1 cut(s) 738
XagI CCTNNNNNAGG 1 cut(s) 471
XapI RAATTY 1 cut(s) 210
XspI CTAG 4 cut(s) 528, 609, 726, 799
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.