Rh2CG429200

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
58259311 .. 58265935
6625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG429200.1

Sequence Viewer

Length: 1131 bp
ATGGCAAGTCTTAGCTACATTGTTTATGTGTTGGCCAGCCTATTCAACCCAATTACCTTCCTTCTATACGGTCATCGTGATCATGGCGATCAGTACTACAGTAGTACTAGTATAGAACACAATCAAAGTAAGGTGGCGCTGTTTGTGTTTGGGGACTCACCATTTGAGGCTGGAAACGACCAATACCTAATTCCTAATGTTACCGTAGAAGATGATGCAGCAATAGCCTGGCCATATGGAATGACTTTCTTCCACCATCCTACTGGAAGATTCAGCGATGGGCGTATTGTCCCCGATTTTATCGCTAAGTTTGCAAAGCTGCCGATGCTTCCACCATACTTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTCGCTTCGGGTGGAGCCGGGGCCCTTGCAACAACCAACACAGGAACTGTGGCAAGTTTTCCAATGCAGTTGAGTTATTTTAGGAATGTGACAAAGTTGCTACAACAGAAACTGGGTCATTTAGAAGCCAAACGTATTCTGAGAAACGCTGTGTACTTGATTAGCATTGGAGGCTGTGATTATTTCAGCTTCTATGCTACAAACCCAAATGCGACCGAGGCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAATATTCGGTGTTACTGAAGGCTGCGTTGAACGACTTCTGAGTTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATATGGGTTCACAAATGGGTCGGATGGATGCTGTGGTACAGGACCGTACAGGGGAGTTGATTGTGCAATAGAACCATTTGAATTATGCGAAGACCCTGGTGAGTATGTGTGGTTTGATGGTGGCCATTCGACTGAAAGGGCAAACTTCCAATATGCAAAGCTAATATGGAGTGGAACCCCGAATACCAGAGGGCCTTACAATGTCCAACAGCTTTTTCAGCAAGTTTGA

Protein Analysis

376

Amino Acids

41.54

Weight (kDa)

5.24

Isoelectric Point (pI)

28.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 354 8.2e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 711
AclWI GGATC 4 cut(s) 366, 379, 709, 888
AcoI YGGCCR 3 cut(s) 33, 230, 1024
AcuI CTGAAG 1 cut(s) 768
AfaI GTAC 5 cut(s) 95, 106, 533, 940, 950
AfiI CCNNNNNNNGG 2 cut(s) 607, 953
AgsI TTSAA 6 cut(s) 46, 653, 761, 844, 852, 983
AhlI ACTAGT 1 cut(s) 107
AjnI CCWGG 2 cut(s) 227, 997
AjuI GAANNNNNNNTTGG 3 cut(s) 174, 206, 1101
AluBI AGCT 7 cut(s) 15, 319, 567, 797, 803, 1063, 1114
AluI AGCT 7 cut(s) 15, 319, 567, 797, 803, 1063, 1114
Alw26I GTCTC 1 cut(s) 721
AlwI GGATC 4 cut(s) 366, 379, 709, 888
AlwNI CAGNNNCTG 2 cut(s) 425, 490
AoxI GGCC 6 cut(s) 33, 230, 399, 597, 1024, 1094
ApaI GGGCCC 1 cut(s) 403
ApeKI GCWGC 3 cut(s) 218, 319, 753
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 765
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 6 cut(s) 350, 399, 400, 598, 944, 1094
AsuC2I CCSGG 2 cut(s) 348, 397
AsuHPI GGTGA 2 cut(s) 150, 1013
AvaII GGWCC 2 cut(s) 350, 944
BaeGI GKGCMC 1 cut(s) 403
BalI TGGCCA 3 cut(s) 35, 232, 1026
BamHI GGATCC 1 cut(s) 371
BanI GGYRCC 1 cut(s) 711
BanII GRGCYC 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 999
BbvI GCAGC 3 cut(s) 230, 306, 740
BccI CCATC 5 cut(s) 264, 272, 362, 920, 1013
BciT130I CCWGG 2 cut(s) 229, 999
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 2 cut(s) 348, 397
BcoDI GTCTC 1 cut(s) 721
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 2 cut(s) 108, 800
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 727
BisI GCNGC 3 cut(s) 219, 320, 754
BlsI GCNGC 3 cut(s) 220, 321, 755
BmcAI AGTACT 2 cut(s) 95, 106
Bme1390I CCNGG 4 cut(s) 229, 348, 397, 999
Bme18I GGWCC 2 cut(s) 350, 944
BmgT120I GGNCC 6 cut(s) 350, 399, 400, 598, 944, 1094
BmiI GGNNCC 6 cut(s) 373, 394, 400, 401, 713, 1078
BmrFI CCNGG 4 cut(s) 229, 348, 397, 999
BmrI ACTGGG 1 cut(s) 500
BmsI GCATC 4 cut(s) 205, 315, 859, 920
BmuI ACTGGG 1 cut(s) 500
BpiI GAAGAC 1 cut(s) 999
BpuMI CCSGG 2 cut(s) 348, 397
Bsa29I ATCGAT 1 cut(s) 883
BsaJI CCNNGG 3 cut(s) 396, 594, 997
Bsc4I CCNNNNNNNGG 2 cut(s) 607, 953
Bse1I ACTGG 2 cut(s) 268, 495
Bse3DI GCAATG 1 cut(s) 729
BseBI CCWGG 2 cut(s) 229, 999
BseCI ATCGAT 1 cut(s) 883
BseDI CCNNGG 3 cut(s) 396, 594, 997
BseGI GGATG 3 cut(s) 256, 931, 935
BseLI CCNNNNNNNGG 2 cut(s) 607, 953
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 3 cut(s) 509, 761, 867
BseNI ACTGG 2 cut(s) 268, 495
BseSI GKGCMC 1 cut(s) 403
BseXI GCAGC 3 cut(s) 230, 306, 740
BseYI CCCAGC 1 cut(s) 600
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 6 cut(s) 35, 232, 401, 599, 1026, 1096
BshNI GGYRCC 1 cut(s) 711
BshVI ATCGAT 1 cut(s) 883
BsiEI CGRYCG 1 cut(s) 594
BsiSI CCGG 2 cut(s) 348, 396
BslFI GGGAC 2 cut(s) 167, 275
BslI CCNNNNNNNGG 2 cut(s) 607, 953
BsmAI GTCTC 1 cut(s) 721
BsmFI GGGAC 2 cut(s) 167, 275
BsnI GGCC 6 cut(s) 35, 232, 401, 599, 1026, 1096
Bsp120I GGGCCC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 403
Bsp143I GATC 5 cut(s) 79, 88, 371, 701, 880
BspANI GGCC 6 cut(s) 35, 232, 401, 599, 1026, 1096
BspCNI CTCAG 3 cut(s) 510, 762, 868
BspDI ATCGAT 1 cut(s) 883
BspLI GGNNCC 6 cut(s) 373, 394, 400, 401, 713, 1078
BspMI ACCTGC 1 cut(s) 727
BspPI GGATC 4 cut(s) 366, 379, 709, 888
BspT107I GGYRCC 1 cut(s) 711
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 2 cut(s) 268, 495
BssECI CCNNGG 3 cut(s) 396, 594, 997
BssMI GATC 5 cut(s) 79, 88, 371, 701, 880
Bst2UI CCWGG 2 cut(s) 229, 999
Bst4CI ACNGT 6 cut(s) 71, 101, 205, 427, 646, 948
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 6 cut(s) 11, 306, 518, 667, 770, 876
BstF5I GGATG 3 cut(s) 256, 931, 935
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 5 cut(s) 82, 91, 374, 704, 883
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 5 cut(s) 79, 88, 371, 701, 880
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 6 cut(s) 224, 311, 325, 549, 596, 1120
BstNI CCWGG 2 cut(s) 229, 999
BstSCI CCNGG 4 cut(s) 227, 346, 395, 997
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 403
BstV1I GCAGC 3 cut(s) 230, 306, 740
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 2 cut(s) 371, 701
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 371, 701
Bsu15I ATCGAT 1 cut(s) 883
BsuRI GGCC 6 cut(s) 35, 232, 401, 599, 1026, 1096
BsuTUI ATCGAT 1 cut(s) 883
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 256, 931, 935
BtsIMutI CAGTG 1 cut(s) 642
BveI ACCTGC 1 cut(s) 727
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 2 cut(s) 425, 490
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 6 cut(s) 350, 399, 400, 598, 944, 1094
ClaI ATCGAT 1 cut(s) 883
Csp6I GTAC 5 cut(s) 94, 105, 532, 939, 949
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 2 cut(s) 83, 356
CviQI GTAC 5 cut(s) 94, 105, 532, 939, 949
DdeI CTNAG 6 cut(s) 11, 306, 518, 667, 770, 876
DpnI GATC 5 cut(s) 81, 90, 373, 703, 882
DpnII GATC 5 cut(s) 79, 88, 371, 701, 880
EaeI YGGCCR 3 cut(s) 33, 230, 1024
Eco24I GRGCYC 1 cut(s) 403
Eco47I GGWCC 2 cut(s) 350, 944
Eco57I CTGAAG 1 cut(s) 768
EcoO109I RGGNCCY 3 cut(s) 399, 400, 1094
EcoRII CCWGG 2 cut(s) 227, 997
EcoT38I GRGCYC 1 cut(s) 403
FaeI CATG 2 cut(s) 86, 359
FaqI GGGAC 2 cut(s) 167, 275
FatI CATG 2 cut(s) 82, 355
FauNDI CATATG 2 cut(s) 235, 904
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 3 cut(s) 219, 320, 754
FokI GGATG 3 cut(s) 243, 938, 942
FriOI GRGCYC 1 cut(s) 403
Fsp4HI GCNGC 3 cut(s) 219, 320, 754
FspBI CTAG 2 cut(s) 108, 800
GlaI GCGC 1 cut(s) 138
GluI GCNGC 3 cut(s) 219, 320, 754
GsaI CCCAGC 1 cut(s) 604
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 6 cut(s) 35, 232, 401, 599, 1026, 1096
HapII CCGG 2 cut(s) 348, 396
HhaI GCGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 86, 359
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 3 cut(s) 155, 270, 840
HpaII CCGG 2 cut(s) 348, 396
HphI GGTGA 2 cut(s) 150, 1013
Hpy166II GTNNAC 3 cut(s) 353, 532, 912
Hpy188I TCNGA 4 cut(s) 519, 693, 771, 925
Hpy188III TCNNGA 3 cut(s) 77, 625, 837
Hpy8I GTNNAC 3 cut(s) 353, 532, 912
HpyAV CCTTC 4 cut(s) 67, 71, 669, 743
HpyCH4III ACNGT 6 cut(s) 71, 101, 205, 427, 646, 948
HpyCH4IV ACGT 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 311, 325, 549, 596, 1120
HpyF3I CTNAG 6 cut(s) 11, 306, 518, 667, 770, 876
HpySE526I ACGT 1 cut(s) 511
Hsp92II CATG 2 cut(s) 86, 359
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 79, 88, 371, 701, 880
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 3 cut(s) 230, 306, 740
LweI GCATC 4 cut(s) 205, 315, 859, 920
MaeI CTAG 2 cut(s) 108, 800
MaeII ACGT 1 cut(s) 511
MaeIII GTNAC 4 cut(s) 199, 466, 632, 742
MalI GATC 5 cut(s) 81, 90, 373, 703, 882
MboI GATC 5 cut(s) 79, 88, 371, 701, 880
MboII GAAGA 4 cut(s) 221, 241, 279, 1004
MflI RGATCY 2 cut(s) 371, 701
MhlI GDGCHC 1 cut(s) 403
MlsI TGGCCA 3 cut(s) 35, 232, 1026
MluCI AATT 4 cut(s) 51, 189, 681, 983
MluNI TGGCCA 3 cut(s) 35, 232, 1026
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 399, 903
MnlI CCTC 8 cut(s) 160, 542, 589, 601, 665, 821, 871, 1085
Mox20I TGGCCA 3 cut(s) 35, 232, 1026
MroXI GAANNNNTTC 1 cut(s) 765
MscI TGGCCA 3 cut(s) 35, 232, 1026
MseI TTAA 2 cut(s) 858, 891
Msp20I TGGCCA 3 cut(s) 35, 232, 1026
MspI CCGG 2 cut(s) 348, 396
MspR9I CCNGG 4 cut(s) 229, 348, 397, 999
MvaI CCWGG 2 cut(s) 229, 999
MwoI GCNNNNNNNGC 6 cut(s) 224, 311, 325, 549, 596, 1120
NciI CCSGG 2 cut(s) 348, 397
NdeI CATATG 2 cut(s) 235, 904
NdeII GATC 5 cut(s) 79, 88, 371, 701, 880
NlaIII CATG 2 cut(s) 86, 359
NlaIV GGNNCC 6 cut(s) 373, 394, 400, 401, 713, 1078
NmuCI GTSAC 1 cut(s) 466
PdmI GAANNNNTTC 1 cut(s) 765
PfeI GAWTC 2 cut(s) 270, 840
PkrI GCNGC 3 cut(s) 220, 321, 755
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 2 cut(s) 227, 997
PspFI CCCAGC 1 cut(s) 600
PspGI CCWGG 2 cut(s) 227, 997
PspN4I GGNNCC 6 cut(s) 373, 394, 400, 401, 713, 1078
PspOMI GGGCCC 1 cut(s) 399
PspPI GGNCC 6 cut(s) 350, 399, 400, 598, 944, 1094
PsrI GAACNNNNNNTAC 2 cut(s) 1069, 1101
PstNI CAGNNNCTG 2 cut(s) 425, 490
PsuI RGATCY 2 cut(s) 371, 701
RsaI GTAC 5 cut(s) 95, 106, 533, 940, 950
RsaNI GTAC 5 cut(s) 94, 105, 532, 939, 949
SaqAI TTAA 2 cut(s) 858, 891
SatI GCNGC 3 cut(s) 219, 320, 754
Sau3AI GATC 5 cut(s) 79, 88, 371, 701, 880
Sau96I GGNCC 6 cut(s) 350, 399, 400, 598, 944, 1094
ScaI AGTACT 2 cut(s) 95, 106
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 4 cut(s) 229, 348, 397, 999
SduI GDGCHC 1 cut(s) 403
SfaNI GCATC 4 cut(s) 205, 315, 859, 920
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 350, 944
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 4 cut(s) 51, 189, 681, 983
SspI AATATT 3 cut(s) 735, 848, 855
SspMI CTAG 2 cut(s) 108, 800
StyD4I CCNGG 4 cut(s) 227, 346, 395, 997
TaaI ACNGT 6 cut(s) 71, 101, 205, 427, 646, 948
TaiI ACGT 1 cut(s) 514
TaqI TCGA 2 cut(s) 883, 1031
TaqII GACCGA 1 cut(s) 608
TasI AATT 4 cut(s) 51, 189, 681, 983
TatI WGTACW 3 cut(s) 93, 104, 531
TfiI GAWTC 2 cut(s) 270, 840
Tru1I TTAA 2 cut(s) 858, 891
Tru9I TTAA 2 cut(s) 858, 891
TscAI CASTG 1 cut(s) 649
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 218, 319, 753
Tsp45I GTSAC 1 cut(s) 466
TspRI CASTG 1 cut(s) 649
VpaK11BI GGWCC 2 cut(s) 350, 944
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XmnI GAANNNNTTC 1 cut(s) 765
XspI CTAG 2 cut(s) 108, 800
ZrmI AGTACT 2 cut(s) 95, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.