pycom09g09260

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Forward (+)
7447285 .. 7448976
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09260.2

Sequence Viewer

Length: 1110 bp
ATGGCAAGTCGTAGATGCATCGTATACGTGTTAGCCATGAGCCTTTTCAACCCAATTAGCTGCCTTCTTAATTATGATCATTCAAACTCCAAGCCTGCATATGAGTCACAACAAAAGGCCTTGTTTGTGTTGGGGGCCTCACTATTTGATCCCGGCAACAATCAATACCTTAATTTGAGCGTCGCTGCAATGAACTGGCCATATGGGGAAACCTTCTTCCGCCATCCCACAGGAAGATTTTCCGATGGACGCTTAGTCCCGGATTTCATTGCTAATTTTGCAAAATTGCCTATGCTTCCACCGTACCTGCAATCTGGTCCGCGTGTATTTACTGATGGCGCCAACTTTGCTTCAGCTGGATCTGGAGTTCTTGTTGAAACTGGTCCAGGAACTCTAAGTTTTCCAAAGCAGTTGAGCTATTTTAAGAAGGCGACGAAGTTGCTGGAACAGCAACTGGGTAATGTAGAAGCCAAGAGTTTGTTGAAAAGATCTGTTTACTTGATCAACATGGGAACGAATGATTATTCTACCTTCTACAATACTAATCCAAATGCCACTGAGTCTCACCGGCAGGATTTCGTAGCAACTGTGATCGGAAACTTGACAAGTGTGCTCCAAGAACTATATAATTTAGGAGGAAGGAAAGTTGCATTTCAGAATGTAGGACCTCTAGGCTGCAGACCTGCAGATAAGCAAGGCTACCCTCAAGCTGATGGTGGGTGTGTTGGAGGACTCTCAGCTCTGGCCAGGTTACATAATAAAGCTCTAGCTAATATCCTCAAAAATTTGGAGAGCCAGAAACCAGGATTCAAATATTCAATATTTGAATATTATGATGCAATTGATGACAGGGTGAATAATCCTTCAAAATATGGCTTCTACAATAGTACGGATGCCTGTTGTGGTACTGGAGCATATCGGGGATCAAATTGCGGCGGAGAAAATGGAACGGAAACATATGAACTGTGCAGCAACCCTGGAGATTATGTGTGGTTTGATGGCGTGCATACGACTGAAAGGTTAAACCTCCAATTAGCAGACCTAATATGGAGTGGAACACCAAATGTCACAGGGCCTTATAATGTCCAACAGCTATTTGAATTGGATTAG

Protein Analysis

370

Amino Acids

40.54

Weight (kDa)

6.53

Isoelectric Point (pI)

31.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1080
Acc36I ACCTGC 2 cut(s) 315, 691
AccB1I GGYRCC 1 cut(s) 338
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 322
AciI CCGC 4 cut(s) 220, 320, 933, 936
AclWI GGATC 3 cut(s) 143, 367, 931
AcoI YGGCCR 2 cut(s) 197, 744
AcsI RAATTY 1 cut(s) 784
AcuI CTGAAG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 3 cut(s) 305, 889, 907
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 9 cut(s) 49, 84, 377, 484, 811, 819, 827, 867, 1100
AhdI GACNNNNNGTC 1 cut(s) 254
AjnI CCWGG 4 cut(s) 385, 746, 802, 976
AloI GAACNNNNNNTCC 2 cut(s) 351, 383
AluBI AGCT 8 cut(s) 60, 356, 417, 710, 740, 764, 770, 1093
AluI AGCT 8 cut(s) 60, 356, 417, 710, 740, 764, 770, 1093
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 1 cut(s) 567
AlwI GGATC 3 cut(s) 143, 367, 931
AlwNI CAGNNNCTG 1 cut(s) 454
AoxI GGCC 5 cut(s) 117, 135, 197, 744, 1073
ApeKI GCWGC 4 cut(s) 60, 185, 675, 969
ApoI RAATTY 1 cut(s) 784
Asp700I GAANNNNTTC 1 cut(s) 238
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 5 cut(s) 135, 317, 383, 665, 1073
AsuC2I CCSGG 2 cut(s) 153, 260
AsuHPI GGTGA 2 cut(s) 557, 865
AvaII GGWCC 3 cut(s) 317, 383, 665
BalI TGGCCA 2 cut(s) 199, 746
BanI GGYRCC 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 4 cut(s) 47, 172, 662, 981
BccI CCATC 5 cut(s) 231, 239, 329, 707, 992
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BciT130I CCWGG 4 cut(s) 387, 748, 804, 978
BclI TGATCA 2 cut(s) 76, 501
BcnI CCSGG 2 cut(s) 153, 260
BcoDI GTCTC 1 cut(s) 567
BfaI CTAG 2 cut(s) 671, 767
BfmI CTRYAG 2 cut(s) 676, 684
BfoI RGCGCY 1 cut(s) 342
BfuAI ACCTGC 2 cut(s) 315, 691
BglII AGATCT 1 cut(s) 488
BisI GCNGC 5 cut(s) 61, 186, 676, 934, 970
BlsI GCNGC 5 cut(s) 62, 187, 677, 935, 971
Bme1390I CCNGG 6 cut(s) 153, 260, 387, 748, 804, 978
Bme18I GGWCC 3 cut(s) 317, 383, 665
BmeRI GACNNNNNGTC 1 cut(s) 254
BmgT120I GGNCC 5 cut(s) 135, 317, 383, 665, 1073
BmiI GGNNCC 2 cut(s) 136, 340
BmrFI CCNGG 6 cut(s) 153, 260, 387, 748, 804, 978
BmrI ACTGGG 1 cut(s) 464
BmsI GCATC 4 cut(s) 5, 27, 826, 883
BmuI ACTGGG 1 cut(s) 464
BpmI CTGGAG 3 cut(s) 384, 930, 999
BpuEI CTTGAG 1 cut(s) 690
BpuMI CCSGG 2 cut(s) 153, 260
BsaAI YACGTR 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 976
BsaXI ACNNNNNCTCC 4 cut(s) 357, 387, 972, 1002
Bse118I RCCGGY 1 cut(s) 567
Bse1I ACTGG 4 cut(s) 200, 385, 459, 913
Bse3DI GCAATG 2 cut(s) 195, 267
BseBI CCWGG 4 cut(s) 387, 748, 804, 978
BseDI CCNNGG 1 cut(s) 976
BseGI GGATG 2 cut(s) 223, 898
BseMI GCAATG 2 cut(s) 195, 267
BseMII CTCAG 2 cut(s) 549, 750
BseNI ACTGG 4 cut(s) 200, 385, 459, 913
BseXI GCAGC 4 cut(s) 47, 172, 662, 981
BsgI GTGCAG 1 cut(s) 988
Bsh1236I CGCG 1 cut(s) 322
BshFI GGCC 5 cut(s) 119, 137, 199, 746, 1075
BshNI GGYRCC 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 615
BsiSI CCGG 3 cut(s) 153, 260, 568
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 567
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 5 cut(s) 119, 137, 199, 746, 1075
Bsp1286I GDGCHC 1 cut(s) 615
Bsp143I GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
BspACI CCGC 4 cut(s) 220, 320, 933, 936
BspANI GGCC 5 cut(s) 119, 137, 199, 746, 1075
BspCNI CTCAG 2 cut(s) 550, 749
BspFNI CGCG 1 cut(s) 322
BspLI GGNNCC 2 cut(s) 136, 340
BspMAI CTGCAG 2 cut(s) 680, 688
BspMI ACCTGC 2 cut(s) 315, 691
BspPI GGATC 3 cut(s) 143, 367, 931
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 195, 267
BsrFI RCCGGY 1 cut(s) 567
BsrI ACTGG 4 cut(s) 200, 385, 459, 913
BssAI RCCGGY 1 cut(s) 567
BssECI CCNNGG 1 cut(s) 976
BssMI GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
BssNAI GTATAC 1 cut(s) 25
BssNI GRCGYC 1 cut(s) 339
Bst1107I GTATAC 1 cut(s) 25
Bst2UI CCWGG 4 cut(s) 387, 748, 804, 978
Bst4CI ACNGT 3 cut(s) 303, 589, 966
BstACI GRCGYC 1 cut(s) 339
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 2 cut(s) 96, 1004
BstDEI CTNAG 4 cut(s) 253, 395, 558, 736
BstF5I GGATG 2 cut(s) 223, 898
BstFNI CGCG 1 cut(s) 322
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 7 cut(s) 79, 151, 362, 491, 504, 594, 926
BstMAI GTCTC 1 cut(s) 567
BstMBI GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
BstMWI GCNNNNNNNGC 3 cut(s) 278, 347, 448
BstNI CCWGG 4 cut(s) 387, 748, 804, 978
BstSCI CCNGG 6 cut(s) 151, 258, 385, 746, 802, 976
BstSFI CTRYAG 2 cut(s) 676, 684
BstUI CGCG 1 cut(s) 322
BstV1I GCAGC 4 cut(s) 47, 172, 662, 981
BstX2I RGATCY 2 cut(s) 359, 488
BstYI RGATCY 2 cut(s) 359, 488
BstZ17I GTATAC 1 cut(s) 25
BsuRI GGCC 5 cut(s) 119, 137, 199, 746, 1075
BtsCI GGATG 2 cut(s) 223, 898
BtsIMutI CAGTG 1 cut(s) 555
BveI ACCTGC 2 cut(s) 315, 691
Cac8I GCNNGC 2 cut(s) 96, 1004
CaiI CAGNNNCTG 1 cut(s) 454
CfoI GCGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 567
Cfr13I GGNCC 5 cut(s) 135, 317, 383, 665, 1073
CseI GACGC 2 cut(s) 169, 258
Csp6I GTAC 3 cut(s) 304, 888, 906
CviAII CATG 2 cut(s) 37, 508
CviQI GTAC 3 cut(s) 304, 888, 906
DdeI CTNAG 4 cut(s) 253, 395, 558, 736
DinI GGCGCC 1 cut(s) 340
DpnI GATC 7 cut(s) 78, 150, 361, 490, 503, 593, 925
DpnII GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
DriI GACNNNNNGTC 1 cut(s) 254
EaeI YGGCCR 2 cut(s) 197, 744
Eam1105I GACNNNNNGTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 209, 951
Eco147I AGGCCT 1 cut(s) 119
Eco47I GGWCC 3 cut(s) 317, 383, 665
Eco57I CTGAAG 1 cut(s) 336
EcoO109I RGGNCCY 3 cut(s) 135, 665, 1073
EcoRII CCWGG 4 cut(s) 385, 746, 802, 976
EcoT22I ATGCAT 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
FaeI CATG 2 cut(s) 40, 511
FaqI GGGAC 1 cut(s) 242
FatI CATG 2 cut(s) 36, 507
FauNDI CATATG 3 cut(s) 100, 202, 958
FbaI TGATCA 2 cut(s) 76, 501
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 61, 186, 676, 934, 970
FokI GGATG 2 cut(s) 210, 905
Fsp4HI GCNGC 5 cut(s) 61, 186, 676, 934, 970
FspBI CTAG 2 cut(s) 671, 767
GlaI GCGC 1 cut(s) 340
GluI GCNGC 5 cut(s) 61, 186, 676, 934, 970
GsuI CTGGAG 3 cut(s) 384, 930, 999
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 5 cut(s) 119, 137, 199, 746, 1075
HapII CCGG 3 cut(s) 153, 260, 568
HgaI GACGC 2 cut(s) 169, 258
HhaI GCGC 1 cut(s) 341
Hin1I GRCGYC 1 cut(s) 339
Hin1II CATG 2 cut(s) 40, 511
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HinfI GANTC 4 cut(s) 104, 560, 732, 807
HpaII CCGG 3 cut(s) 153, 260, 568
HphI GGTGA 2 cut(s) 557, 865
Hpy166II GTNNAC 2 cut(s) 25, 496
Hpy188I TCNGA 3 cut(s) 244, 596, 657
Hpy188III TCNNGA 1 cut(s) 363
Hpy8I GTNNAC 2 cut(s) 25, 496
Hpy99I CGWCG 2 cut(s) 185, 436
HpyAV CCTTC 6 cut(s) 74, 223, 421, 541, 633, 873
HpyCH4III ACNGT 3 cut(s) 303, 589, 966
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 3 cut(s) 278, 347, 448
HpyF3I CTNAG 4 cut(s) 253, 395, 558, 736
HpySE526I ACGT 1 cut(s) 27
Hsp92I GRCGYC 1 cut(s) 339
Hsp92II CATG 2 cut(s) 40, 511
HspAI GCGC 1 cut(s) 339
KasI GGCGCC 1 cut(s) 338
Ksp22I TGATCA 2 cut(s) 76, 501
Kzo9I GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
LmnI GCTCC 2 cut(s) 618, 911
Lsp1109I GCAGC 4 cut(s) 47, 172, 662, 981
LweI GCATC 4 cut(s) 5, 27, 826, 883
MaeI CTAG 2 cut(s) 671, 767
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 105, 750, 1066
MalI GATC 7 cut(s) 78, 150, 361, 490, 503, 593, 925
MboI GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
MboII GAAGA 2 cut(s) 208, 246
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 2 cut(s) 359, 488
MhlI GDGCHC 1 cut(s) 615
MlsI TGGCCA 2 cut(s) 199, 746
MluNI TGGCCA 2 cut(s) 199, 746
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 3 cut(s) 113, 569, 726
MmeI TCCRAC 1 cut(s) 706
MnlI CCTC 7 cut(s) 148, 629, 678, 714, 722, 788, 1037
Mox20I TGGCCA 2 cut(s) 199, 746
Mph1103I ATGCAT 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 238
MscI TGGCCA 2 cut(s) 199, 746
MseI TTAA 4 cut(s) 69, 171, 423, 1022
Msp20I TGGCCA 2 cut(s) 199, 746
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 3 cut(s) 153, 260, 568
MspR9I CCNGG 6 cut(s) 153, 260, 387, 748, 804, 978
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 4 cut(s) 387, 748, 804, 978
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 3 cut(s) 278, 347, 448
NarI GGCGCC 1 cut(s) 339
NciI CCSGG 2 cut(s) 153, 260
NdeI CATATG 3 cut(s) 100, 202, 958
NdeII GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
NlaIII CATG 2 cut(s) 40, 511
NlaIV GGNNCC 2 cut(s) 136, 340
NmuCI GTSAC 2 cut(s) 105, 1066
NsiI ATGCAT 1 cut(s) 20
PceI AGGCCT 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 807
PfoI TCCNGGA 2 cut(s) 258, 385
PkrI GCNGC 5 cut(s) 62, 187, 677, 935, 971
PleI GAGTC 3 cut(s) 112, 568, 726
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 3 cut(s) 112, 568, 726
Ppu21I YACGTR 1 cut(s) 28
PpuMI RGGWCCY 1 cut(s) 665
PsiI TTATAA 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 665
Psp6I CCWGG 4 cut(s) 385, 746, 802, 976
PspGI CCWGG 4 cut(s) 385, 746, 802, 976
PspN4I GGNNCC 2 cut(s) 136, 340
PspPI GGNCC 5 cut(s) 135, 317, 383, 665, 1073
PspPPI RGGWCCY 1 cut(s) 665
PstI CTGCAG 2 cut(s) 680, 688
PstNI CAGNNNCTG 1 cut(s) 454
PsuI RGATCY 2 cut(s) 359, 488
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 3 cut(s) 305, 889, 907
RsaNI GTAC 3 cut(s) 304, 888, 906
SaqAI TTAA 4 cut(s) 69, 171, 423, 1022
SatI GCNGC 5 cut(s) 61, 186, 676, 934, 970
Sau3AI GATC 7 cut(s) 76, 148, 359, 488, 501, 591, 923
Sau96I GGNCC 5 cut(s) 135, 317, 383, 665, 1073
SchI GAGTC 3 cut(s) 113, 569, 726
ScrFI CCNGG 6 cut(s) 153, 260, 387, 748, 804, 978
SduI GDGCHC 1 cut(s) 615
SfaNI GCATC 4 cut(s) 5, 27, 826, 883
SfcI CTRYAG 2 cut(s) 676, 684
SfoI GGCGCC 1 cut(s) 340
SinI GGWCC 3 cut(s) 317, 383, 665
SmlI CTYRAG 1 cut(s) 705
SmoI CTYRAG 1 cut(s) 705
SseBI AGGCCT 1 cut(s) 119
SsiI CCGC 4 cut(s) 220, 320, 933, 936
SspDI GGCGCC 1 cut(s) 338
SspI AATATT 3 cut(s) 815, 822, 830
SspMI CTAG 2 cut(s) 671, 767
StuI AGGCCT 1 cut(s) 119
StyD4I CCNGG 6 cut(s) 151, 258, 385, 746, 802, 976
TaaI ACNGT 3 cut(s) 303, 589, 966
TaiI ACGT 1 cut(s) 30
TauI GCSGC 1 cut(s) 936
TfiI GAWTC 1 cut(s) 807
Tru1I TTAA 4 cut(s) 69, 171, 423, 1022
Tru9I TTAA 4 cut(s) 69, 171, 423, 1022
TscAI CASTG 1 cut(s) 562
TseFI GTSAC 2 cut(s) 105, 1066
TseI GCWGC 4 cut(s) 60, 185, 675, 969
Tsp45I GTSAC 2 cut(s) 105, 1066
TspDTI ATGAA 3 cut(s) 206, 256, 975
TspGWI ACGGA 2 cut(s) 905, 965
TspRI CASTG 1 cut(s) 562
VpaK11BI GGWCC 3 cut(s) 317, 383, 665
XapI RAATTY 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 238
XspI CTAG 2 cut(s) 671, 767
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.