Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

68998574 .. 69001046

Gene Structure 2473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG477300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCAAGTCTTGCTTACTGTGTTTTACTCCTTGTAACCGTTCTCAGTTTCAGCCCAGATAGCTGCTTCTGTGCTGCTCCCCAATCCAAACCAGAACACAAGGCGGCCTTGTTTGTGTTTGGGGACTCGCTCTTTGATTCTGGGAACAACCAATACCTCAATAGTAGTAGCGGCATGGGAGCGGCAACAACTAAGCTGCCGTACGGAGAAACCTACTTCAAGCACGCCACTGGTCGGGTCTCCGATGGCCGCGTTGTCCCCGATTTTATTGCTCAGTTTGCAAAGCTTCCTATGCCACCACCATATCTGCAACCTGGTGCACATCACTTTACAGACGGGGTCAATTTTGCTTCTGCTGGAGCTGGTGTTCTTCCCGGAACTTTCCCCGGAGCGATAGACTTTCCTACTCAGTTGAGCTATTTTAAGGCCATGGAGAAGACACTGAGACAGAGACTGGGTGATAAGGAAACCAAGAAGTTGCTGGGCAGAGCTGTTTATTTGTTCAGCATTGGAGGAAATGACTACTTTAGCTACGCTTCTAAAAACCCAAAAGCTCTACAGATCTACAAGAGACAGTATGTAGCAATGGTGCTCAGAAACTTGATCAGTGTGCTCAAAGAAATATATAATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTAGGACCTCTGGGATGCGTACCGGCAACGAAAGCAATGAATCCTGCACTCGGTAGTAAATGTTCTGAAGAACCATTAACACTAGCCAGACTCCATAACAGAGCCCTATTCATTGCCTTCAAGAAGTTAGAGAAGAGCTTACCAGGATTCAAATTCTCAATATTCGACTACTACAATGCACTTGGGGACAGAATCAACAACCCTTCAAAATATGGTACGCTTATCAAATTCATCACACTGAACTTTGACCGTGTATCAATTCATCATACGAACTCATGTTTAGCAACTAAATTAATTGGGACAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

322

Amino Acids

35.28

Weight (kDa)

9.55

Isoelectric Point (pI)

28.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 280	5e-22	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	182
AccII	CGCG	1 cut(s)	252
AciI	CCGC	4 cut(s)	104, 171, 182, 250
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	812, 887
AcuI	CTGAAG	1 cut(s)	747
AfaI	GTAC	3 cut(s)	203, 681, 877
AfiI	CCNNNNNNNGG	2 cut(s)	234, 710
AgsI	TTSAA	4 cut(s)	220, 781, 811, 867
AjnI	CCWGG	2 cut(s)	313, 802
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	9 cut(s)	63, 196, 286, 362, 417, 491, 531, 554, 798
AluI	AGCT	9 cut(s)	63, 196, 286, 362, 417, 491, 531, 554, 798
Alw21I	GWGCWC	3 cut(s)	322, 594, 615
Alw26I	GTCTC	4 cut(s)	244, 439, 445, 565
Alw44I	GTGCAC	1 cut(s)	318
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	3 cut(s)	105, 247, 426
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	3 cut(s)	63, 74, 196
ApoI	RAATTY	2 cut(s)	812, 887
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	953
AspS9I	GGNCC	1 cut(s)	665
AsuC2I	CCSGG	2 cut(s)	375, 387
AsuHPI	GGTGA	1 cut(s)	470
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	766
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	3 cut(s)	322, 594, 615
BbvI	GCAGC	3 cut(s)	50, 61, 183
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BciT130I	CCWGG	2 cut(s)	315, 804
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	375, 387
BcoDI	GTCTC	4 cut(s)	244, 439, 445, 565
BfaI	CTAG	1 cut(s)	743
BfmI	CTRYAG	1 cut(s)	557
BglII	AGATCT	1 cut(s)	561
BisI	GCNGC	7 cut(s)	64, 75, 105, 172, 183, 197, 250
BlsI	GCNGC	7 cut(s)	65, 76, 106, 173, 184, 198, 251
Bme1390I	CCNGG	4 cut(s)	315, 375, 387, 804
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmrFI	CCNGG	4 cut(s)	315, 375, 387, 804
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	665
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	375, 387
BsaI	GGTCTC	1 cut(s)	244
BsaJI	CCNNGG	2 cut(s)	385, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	351, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	234, 710
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	235, 459
Bse3DI	GCAATG	3 cut(s)	591, 702, 771
BseBI	CCWGG	2 cut(s)	315, 804
BseDI	CCNNGG	2 cut(s)	385, 429
BseGI	GGATG	1 cut(s)	680
BseLI	CCNNNNNNNGG	2 cut(s)	234, 710
BseMI	GCAATG	3 cut(s)	591, 702, 771
BseMII	CTCAG	5 cut(s)	58, 287, 422, 434, 607
BseNI	ACTGG	2 cut(s)	235, 459
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	3 cut(s)	50, 61, 183
BseYI	CCCAGC	1 cut(s)	481
BsgI	GTGCAG	1 cut(s)	690
Bsh1236I	CGCG	1 cut(s)	252
BshFI	GGCC	3 cut(s)	107, 249, 428
BsiHKAI	GWGCWC	3 cut(s)	322, 594, 615
BsiSI	CCGG	3 cut(s)	375, 387, 683
BsiWI	CGTACG	1 cut(s)	201
BslFI	GGGAC	3 cut(s)	137, 242, 860
BslI	CCNNNNNNNGG	2 cut(s)	234, 710
BsmAI	GTCTC	4 cut(s)	244, 439, 445, 565
BsmFI	GGGAC	3 cut(s)	137, 242, 860
BsnI	GGCC	3 cut(s)	107, 249, 428
Bso31I	GGTCTC	1 cut(s)	244
Bsp1286I	GDGCHC	4 cut(s)	322, 594, 615, 766
Bsp143I	GATC	2 cut(s)	561, 603
Bsp19I	CCATGG	1 cut(s)	429
BspACI	CCGC	4 cut(s)	104, 171, 182, 250
BspANI	GGCC	3 cut(s)	107, 249, 428
BspCNI	CTCAG	5 cut(s)	57, 286, 421, 435, 606
BspFNI	CGCG	1 cut(s)	252
BspQI	GCTCTTC	1 cut(s)	788
BspTNI	GGTCTC	1 cut(s)	244
BsrBI	CCGCTC	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	591, 702, 771
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	235, 459
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	2 cut(s)	385, 429
BssMI	GATC	2 cut(s)	561, 603
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	315, 804
Bst4CI	ACNGT	4 cut(s)	20, 40, 576, 911
Bst6I	CTCTTC	1 cut(s)	788
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	6 cut(s)	44, 192, 273, 408, 443, 593
BstDSI	CCRYGG	1 cut(s)	429
BstF5I	GGATG	1 cut(s)	680
BstFNI	CGCG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	564, 606
BstMAI	GTCTC	4 cut(s)	244, 439, 445, 565
BstMBI	GATC	2 cut(s)	561, 603
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 60, 278, 292, 692
BstNI	CCWGG	2 cut(s)	315, 804
BstSCI	CCNGG	4 cut(s)	313, 373, 385, 802
BstSFI	CTRYAG	1 cut(s)	557
BstSLI	GKGCMC	1 cut(s)	322
BstUI	CGCG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	50, 61, 183
BstV2I	GAAGAC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	3 cut(s)	107, 249, 428
BtgI	CCRYGG	1 cut(s)	429
BtsCI	GGATG	1 cut(s)	680
BtsIMutI	CAGTG	4 cut(s)	228, 440, 613, 896
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	454
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	1 cut(s)	665
CsiI	ACCWGGT	1 cut(s)	313
Csp6I	GTAC	3 cut(s)	202, 680, 876
CviAII	CATG	3 cut(s)	175, 430, 936
CviQI	GTAC	3 cut(s)	202, 680, 876
DdeI	CTNAG	6 cut(s)	44, 192, 273, 408, 443, 593
DpnI	GATC	2 cut(s)	563, 605
DpnII	GATC	2 cut(s)	561, 603
EaeI	YGGCCR	1 cut(s)	247
Eam1104I	CTCTTC	1 cut(s)	788
EarI	CTCTTC	1 cut(s)	788
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	766
Eco31I	GGTCTC	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	665
Eco57I	CTGAAG	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	665
EcoRII	CCWGG	2 cut(s)	313, 802
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	766
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	178, 433, 939
FalI	AAGNNNNNCTT	3 cut(s)	30, 92, 124
FaqI	GGGAC	3 cut(s)	137, 242, 860
FatI	CATG	3 cut(s)	174, 429, 935
FbaI	TGATCA	1 cut(s)	603
Fnu4HI	GCNGC	7 cut(s)	64, 75, 105, 172, 183, 197, 250
FokI	GGATG	1 cut(s)	687
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	7 cut(s)	64, 75, 105, 172, 183, 197, 250
FspBI	CTAG	1 cut(s)	743
GluI	GCNGC	7 cut(s)	64, 75, 105, 172, 183, 197, 250
GsaI	CCCAGC	1 cut(s)	485
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	3 cut(s)	107, 249, 428
HapII	CCGG	3 cut(s)	375, 387, 683
Hin1II	CATG	3 cut(s)	178, 433, 939
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	6 cut(s)	125, 137, 700, 750, 807, 852
HpaII	CCGG	3 cut(s)	375, 387, 683
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	4 cut(s)	244, 596, 657, 727
Hpy188III	TCNNGA	1 cut(s)	781
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	3 cut(s)	633, 787, 873
HpyCH4III	ACNGT	4 cut(s)	20, 40, 576, 911
HpyCH4V	TGCA	6 cut(s)	281, 310, 320, 650, 707, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 60, 278, 292, 692
HpyF3I	CTNAG	6 cut(s)	44, 192, 273, 408, 443, 593
Hsp92II	CATG	3 cut(s)	178, 433, 939
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	2 cut(s)	561, 603
LguI	GCTCTTC	1 cut(s)	788
LmnI	GCTCC	4 cut(s)	82, 179, 359, 389
Lsp1109I	GCAGC	3 cut(s)	50, 61, 183
LweI	GCATC	1 cut(s)	665
MabI	ACCWGGT	1 cut(s)	313
MaeI	CTAG	1 cut(s)	743
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	563, 605
MbiI	CCGCTC	1 cut(s)	182
MboI	GATC	2 cut(s)	561, 603
MboII	GAAGA	4 cut(s)	362, 448, 740, 805
MflI	RGATCY	1 cut(s)	561
MhlI	GDGCHC	4 cut(s)	322, 594, 615, 766
MluCI	AATT	9 cut(s)	343, 628, 645, 812, 887, 918, 950, 954, 964
MlyI	GAGTC	2 cut(s)	119, 744
MnlI	CCTC	4 cut(s)	167, 506, 629, 678
MseI	TTAA	3 cut(s)	423, 737, 953
MspI	CCGG	3 cut(s)	375, 387, 683
MspR9I	CCNGG	4 cut(s)	315, 375, 387, 804
MvaI	CCWGG	2 cut(s)	315, 804
MvnI	CGCG	1 cut(s)	252
MwoI	GCNNNNNNNGC	5 cut(s)	11, 60, 278, 292, 692
NciI	CCSGG	2 cut(s)	375, 387
NcoI	CCATGG	1 cut(s)	429
NdeII	GATC	2 cut(s)	561, 603
NlaIII	CATG	3 cut(s)	178, 433, 939
PciSI	GCTCTTC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	137, 700, 807, 852
Pfl23II	CGTACG	1 cut(s)	201
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	7 cut(s)	65, 76, 106, 173, 184, 198, 251
PleI	GAGTC	2 cut(s)	119, 744
PpsI	GAGTC	2 cut(s)	119, 744
PpuMI	RGGWCCY	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	953
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	2 cut(s)	313, 802
PspFI	CCCAGC	1 cut(s)	481
PspGI	CCWGG	2 cut(s)	313, 802
PspLI	CGTACG	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	665
PspPPI	RGGWCCY	1 cut(s)	665
PsrI	GAACNNNNNNTAC	4 cut(s)	137, 169, 706, 738
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	338
RsaI	GTAC	3 cut(s)	203, 681, 877
RsaNI	GTAC	3 cut(s)	202, 680, 876
SapI	GCTCTTC	1 cut(s)	788
SaqAI	TTAA	3 cut(s)	423, 737, 953
SatI	GCNGC	7 cut(s)	64, 75, 105, 172, 183, 197, 250
Sau3AI	GATC	2 cut(s)	561, 603
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	2 cut(s)	119, 744
ScrFI	CCNGG	4 cut(s)	315, 375, 387, 804
SduI	GDGCHC	4 cut(s)	322, 594, 615, 766
SexAI	ACCWGGT	1 cut(s)	313
SfaNI	GCATC	1 cut(s)	665
SfcI	CTRYAG	1 cut(s)	557
SinI	GGWCC	1 cut(s)	665
Sse9I	AATT	9 cut(s)	343, 628, 645, 812, 887, 918, 950, 954, 964
SsiI	CCGC	4 cut(s)	104, 171, 182, 250
SspI	AATATT	1 cut(s)	822
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	4 cut(s)	313, 373, 385, 802
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	4 cut(s)	20, 40, 576, 911
TaqI	TCGA	1 cut(s)	825
TasI	AATT	9 cut(s)	343, 628, 645, 812, 887, 918, 950, 954, 964
TauI	GCSGC	4 cut(s)	107, 174, 185, 252
TfiI	GAWTC	4 cut(s)	137, 700, 807, 852
Tru1I	TTAA	3 cut(s)	423, 737, 953
Tru9I	TTAA	3 cut(s)	423, 737, 953
TscAI	CASTG	4 cut(s)	235, 447, 613, 903
TseI	GCWGC	3 cut(s)	63, 74, 196
TspDTI	ATGAA	4 cut(s)	713, 760, 880, 911
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	4 cut(s)	235, 447, 613, 903
Tth111I	GACNNNGTC	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	953
XapI	RAATTY	2 cut(s)	812, 887
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478
XspI	CTAG	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.