Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000443

Physical Location & Seq

Genomic Coordinates Reverse (-)

62770548 .. 62771506

Gene Structure 959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020243

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGAAGAAGTCACTGCATCAGAAATTGGGTGACAAAGAGGTTAAGAAGTTGATGGGGAGAGCTGTTTATTTCTTCAGCATTGGAGGAAATGACTACATTAACCTCTTTTCCCAACAACCAAAAGCTCCTCATAGCTACAAGATGCAATATGTAGCAATGGTGATCAGGAACTTGACCATTGTGCTCAAAGAAATATATGATTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGCACCTCTGGGCTGCATACCTGCAGTGAAATCAGGAAATCCTGATGTTGGTAGTAAATGTCTTGAAGAACCATTAAAGCTGGCCAGACTACATAATATAGCTCTTTCTACTGCCCTCAAGAAGTTAGAGAACCACTTACCAGGATTTAAGTACTCAATATTTGATTACTATAATGCACTTGGGGACAGAGTTAACAATCCTTCAAAATATGGCTTCAAGAATGGGACATCTGCTTGTTGTGGTAGTGGGGCATTTAGAGGGTCTAATTGTGGGACAGAACCATACGAGTTATGCAGCAACGCCAGTGAGTATGTGTGGTTTGATGGTGGTCATACAACTGAAAGTGCCAACCTCCAACTAGCTGAGCTAATATGGAGTGGACCTTCAAATGTGACGGGGCCTTACACTATGAAACAGCTATTTCAACAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005911 GO:0006810 GO:0006886 GO:0006996 GO:0007029 GO:0008104 GO:0008150 GO:0009506 GO:0009705 GO:0009987 GO:0010168 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0030054 GO:0031090 GO:0032527 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

223

Amino Acids

24.53

Weight (kDa)

9.12

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	14 - 202	1.6e-16	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000443)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica	MD09G1175400.v1.1
pyrus_communis	pycom09g09260
rosa_chinensis	RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata	RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora	Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa	Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha	Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana	Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AccB1I	GGYRCC	1 cut(s)	235
AcoI	YGGCCR	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	58
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	5 cut(s)	299, 438, 451, 621, 659
AjnI	CCWGG	1 cut(s)	373
AluBI	AGCT	8 cut(s)	62, 125, 135, 313, 335, 596, 601, 652
AluI	AGCT	8 cut(s)	62, 125, 135, 313, 335, 596, 601, 652
Alw21I	GWGCWC	1 cut(s)	186
AoxI	GGCC	2 cut(s)	315, 632
ApeKI	GCWGC	2 cut(s)	246, 528
AspS9I	GGNCC	2 cut(s)	614, 632
AsuHPI	GGTGA	2 cut(s)	41, 172
AvaII	GGWCC	1 cut(s)	614
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	2 cut(s)	233, 540
BccI	CCATC	2 cut(s)	46, 551
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	1 cut(s)	162
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	262
BisI	GCNGC	2 cut(s)	247, 529
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	2 cut(s)	248, 530
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	375
Bme18I	GGWCC	1 cut(s)	614
BmgT120I	GGNCC	2 cut(s)	614, 632
BmiI	GGNNCC	2 cut(s)	237, 633
BmrFI	CCNGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	25, 132
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	537
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	588
BseNI	ACTGG	1 cut(s)	537
BseRI	GAGGAG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	233, 540
BshFI	GGCC	2 cut(s)	317, 634
BshNI	GGYRCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	186
BslFI	GGGAC	3 cut(s)	431, 472, 520
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmFI	GGGAC	3 cut(s)	431, 472, 520
BsnI	GGCC	2 cut(s)	317, 634
Bsp1286I	GDGCHC	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	162
Bsp1720I	GCTNAGC	1 cut(s)	597
BspANI	GGCC	2 cut(s)	317, 634
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	2 cut(s)	237, 633
BspMAI	CTGCAG	1 cut(s)	259
BspMI	ACCTGC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	235
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	537
BssMI	GATC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	597
BstKTI	GATC	1 cut(s)	165
BstMBI	GATC	1 cut(s)	162
BstNI	CCWGG	1 cut(s)	375
BstSCI	CCNGG	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	233, 540
BsuRI	GGCC	2 cut(s)	317, 634
BtsI	GCAGTG	2 cut(s)	11, 264
BtsIMutI	CAGTG	3 cut(s)	11, 264, 544
BveI	ACCTGC	1 cut(s)	262
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	614, 632
Csp6I	GTAC	1 cut(s)	385
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	614
Eco57I	CTGAAG	1 cut(s)	58
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	373
FaqI	GGGAC	3 cut(s)	431, 472, 520
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	247, 529
Fsp4HI	GCNGC	2 cut(s)	247, 529
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	2 cut(s)	247, 529
HaeIII	GGCC	2 cut(s)	317, 634
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HpaI	GTTAAC	1 cut(s)	427
HphI	GGTGA	2 cut(s)	41, 172
Hpy166II	GTNNAC	2 cut(s)	427, 614
Hpy188I	TCNGA	2 cut(s)	21, 228
Hpy188III	TCNNGA	7 cut(s)	166, 267, 275, 296, 352, 451, 666
Hpy8I	GTNNAC	2 cut(s)	427, 614
HpyAV	CCTTC	3 cut(s)	204, 444, 627
HpyCH4V	TGCA	7 cut(s)	16, 145, 221, 249, 257, 410, 528
HpyF3I	CTNAG	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	162
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	233, 540
LweI	GCATC	2 cut(s)	25, 132
MaeI	CTAG	1 cut(s)	593
MaeIII	GTNAC	3 cut(s)	9, 29, 625
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	16, 64, 311
MhlI	GDGCHC	1 cut(s)	186
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	3 cut(s)	23, 216, 499
MluNI	TGGCCA	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	613
MnlI	CCTC	9 cut(s)	31, 77, 113, 138, 200, 249, 359, 485, 596
Mox20I	TGGCCA	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	5 cut(s)	42, 99, 308, 381, 426
Msp20I	TGGCCA	1 cut(s)	317
MspR9I	CCNGG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	162
NlaIV	GGNNCC	2 cut(s)	237, 633
NmuCI	GTSAC	3 cut(s)	9, 29, 625
PkrI	GCNGC	2 cut(s)	248, 530
Psp6I	CCWGG	1 cut(s)	373
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	2 cut(s)	237, 633
PspPI	GGNCC	2 cut(s)	614, 632
PstI	CTGCAG	1 cut(s)	259
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SaqAI	TTAA	5 cut(s)	42, 99, 308, 381, 426
SatI	GCNGC	2 cut(s)	247, 529
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	2 cut(s)	614, 632
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	1 cut(s)	186
SfaNI	GCATC	2 cut(s)	25, 132
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	3 cut(s)	23, 216, 499
SspI	AATATT	1 cut(s)	393
SspMI	CTAG	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	373
TasI	AATT	3 cut(s)	23, 216, 499
TatI	WGTACW	1 cut(s)	384
Tru1I	TTAA	5 cut(s)	42, 99, 308, 381, 426
Tru9I	TTAA	5 cut(s)	42, 99, 308, 381, 426
TscAI	CASTG	3 cut(s)	18, 264, 544
TseFI	GTSAC	3 cut(s)	9, 29, 625
TseI	GCWGC	2 cut(s)	246, 528
Tsp45I	GTSAC	3 cut(s)	9, 29, 625
TspDTI	ATGAA	2 cut(s)	17, 659
TspRI	CASTG	3 cut(s)	18, 264, 544
VpaK11BI	GGWCC	1 cut(s)	614
XspI	CTAG	1 cut(s)	593
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.