Rw2G036130

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
59254005 .. 59266570
12566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G036130.1

Sequence Viewer

Length: 1140 bp
ATGGCAAGTCTTAGCTACATTGTTTACGTGTTGGCCAGCCTATTCAACCCAATTACCTTCCTTCTATACGGTCATCGTGATCATGGCGATCAGTACTACAGTAGTACTAGTATAGAACACAATCAAAGTAAGGTGGCGCTGTTTGTGTTTGGGGACTCACCATTTGAGGCTGGAAACGACCAATACCTAATTCCTAATGTTACCGTAGAAGATGATGAAGCAATAGCCTGGCCATATGGAATGACTTTCTTCCACCATCCTACTGGAAGATTCAGCGATGGGCGTATTGTCCCCGATTTTATCGACGCTTCAACGGCTAAGTTTGCAAAGCTGCCGATGCTTCCACCATACTTGCAACCCGGTCCACATGATTTTACCGATGGATCCAACTTCGCTTCGGGTGGAGCGGGGGCCCTTGCAACAACCAACACAGGAACTGCAAGTTTTCCAATGCAGTTGAGTTATTTTAGGAATGTGACAAAGTTGCTACAACAGAAACTGGGTCATTTAGAAGCCAAGCGAATTCTGAGAAACGCTGTGTACTTGATTAGCATCGGAGGCTGTGATTATTTCAGCTTCTATGCTACAAACCCAAATGCGACCGAGCCCCAGCAAGAGGAATATGTAGCAATCGTGATTGGTAACTTGACCACTGTGCTTCAAGGGATATATAACTTAGGAGGAAGGAAAATTGCATTTCAGAATGTGGGATCTCTTGGGTGCCTACCTGCAATGAGACAAATATTCGGTGTTACTGAAGGCTGCGTTGAAGGACTTCTGAGTTTGGCGAACCTACACAATACAGCTCTAGCTAATGTCCTCAAAGAGTTAGAGAGCCAACTATCAGGATTCAAATATTCAATATTTAACTACTATGATGCGACTGAGGATCGATACCTTAACCCTGCAACATATGGGTTCACAAATGGGTCGGATGGATGCTGTGGTACAGGACCGTACAGGGGAGTTGATTGTGCAATAGAACCGTTTGAATTATGCGAAGACCCACCAGAGTATGTGTGGTTTGATGGTGGCCATTCGACTGAAAGGGCAAACTTCCAATATGCAAAGCTAATATGGAGTGGAACCCCGAATACCACAGGGCCTTACAATGTCCAACAGCTTTTTCAGCAAGTTTGA

Protein Analysis

379

Amino Acids

41.78

Weight (kDa)

4.92

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 47 - 357 1.3e-24 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000443)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g35490 FvH4_6g35490 FvH4_6g35500 FvH4_6g35500 FvH4_6g35500 FvH4_6g35520 FvH4_6g35520 FvH4_6g35540 FvH4_6g35550
malus_domestica MD09G1175400.v1.1
pyrus_communis pycom09g09260
rosa_chinensis RchiOBHm_Chr2g0144821 RchiOBHm_Chr2g0145011 RchiOBHm_Chr2g0145061 RchiOBHm_Chr2g0147051 RchiOBHm_Chr2g0147071 RchiOBHm_Chr2g0147111 RchiOBHm_Chr2g0147141
rosa_laevigata RLG00000020116 RLG00000020119 RLG00000020120 RLG00000020122 RLG00000020243 RLG00000020245 RLG00000020246
rosa_multiflora Rmu_co8407447.1_g000001 Rmu_sc0000070.1_g000059 Rmu_sc0001668.1_g000005 Rmu_sc0001880.1_g000013 Rmu_sc0001880.1_g000020 Rmu_sc0001880.1_g000023 Rmu_sc0001880.1_g000027 Rmu_sc0002354.1_g000023 Rmu_sc0002506.1_g000001 Rmu_sc0002506.1_g000016 Rmu_sc0004897.1_g000008 Rmu_sc0007988.1_g000001
rosa_roxburghii Rroxscaffold_1G00033230 Rroxscaffold_2G00099670 Rroxscaffold_2G00099720 Rroxscaffold_2G00100900 Rroxscaffold_2G00100930 Rroxscaffold_2G00100940
rosa_rugosa Rorug02G0390000 Rorug02G0390100 Rorug02G0390200 Rorug02G0390200 Rorug02G0390200 Rorug02G0398400 Rorug02G0398500 Rorug02G0398600
rosa_samantha Rh2AG442200 Rh2AG442500 Rh2AG442700 Rh2AG455600 Rh2AG455700 Rh2AG455800 Rh2AG455900 Rh2BG452500 Rh2BG453000 Rh2BG453700 Rh2BG467900 Rh2BG468100 Rh2BG468200 Rh2CG429200 Rh2CG429500 Rh2CG429600 Rh2CG429700 Rh2CG443000 Rh2CG443100 Rh2CG443200 Rh2CG443300 Rh2DG462200 Rh2DG463000 Rh2DG463200 Rh2DG463700 Rh2DG477300 Rh2DG477500 Rh2DG477600 Rh4AG390700 Rh5AG320200
rosa_wichuraiana Rw2G036130 Rw2G036170 Rw2G036180 Rw2G037150 Rw2G037160 Rw2G037170 Rw2G037180 Rw2G037260 Rw2G037270 Rw2G037280 Rw2G037290 Rw5G030070 Rw5G030220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 736
AccB1I GGYRCC 1 cut(s) 720
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 1 cut(s) 407
AclWI GGATC 4 cut(s) 378, 391, 718, 897
AcoI YGGCCR 3 cut(s) 33, 230, 1033
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 777
AfaI GTAC 5 cut(s) 95, 106, 542, 949, 959
AfiI CCNNNNNNNGG 2 cut(s) 616, 962
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 7 cut(s) 46, 312, 662, 770, 853, 861, 992
AhlI ACTAGT 1 cut(s) 107
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 3 cut(s) 174, 206, 1110
AluBI AGCT 7 cut(s) 15, 331, 576, 806, 812, 1072, 1123
AluI AGCT 7 cut(s) 15, 331, 576, 806, 812, 1072, 1123
Alw26I GTCTC 1 cut(s) 730
AlwI GGATC 4 cut(s) 378, 391, 718, 897
AlwNI CAGNNNCTG 2 cut(s) 437, 499
AoxI GGCC 5 cut(s) 33, 230, 411, 1033, 1103
ApaI GGGCCC 1 cut(s) 415
ApeKI GCWGC 2 cut(s) 331, 762
ApoI RAATTY 1 cut(s) 522
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 5 cut(s) 362, 411, 412, 953, 1103
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 150
AvaII GGWCC 2 cut(s) 362, 953
BaeGI GKGCMC 1 cut(s) 415
BalI TGGCCA 3 cut(s) 35, 232, 1035
BamHI GGATCC 1 cut(s) 383
BanI GGYRCC 1 cut(s) 720
BanII GRGCYC 2 cut(s) 415, 609
BbsI GAAGAC 1 cut(s) 1008
BbvI GCAGC 2 cut(s) 318, 749
BccI CCATC 5 cut(s) 264, 272, 374, 929, 1022
BceAI ACGGC 1 cut(s) 330
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 730
BcuI ACTAGT 1 cut(s) 107
BfaI CTAG 2 cut(s) 108, 809
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 140
BfuAI ACCTGC 1 cut(s) 736
BisI GCNGC 2 cut(s) 332, 763
BlsI GCNGC 2 cut(s) 333, 764
BmcAI AGTACT 2 cut(s) 95, 106
Bme1390I CCNGG 2 cut(s) 229, 360
Bme18I GGWCC 2 cut(s) 362, 953
BmgT120I GGNCC 5 cut(s) 362, 411, 412, 953, 1103
BmiI GGNNCC 5 cut(s) 385, 412, 413, 722, 1087
BmrFI CCNGG 2 cut(s) 229, 360
BmrI ACTGGG 1 cut(s) 509
BmsI GCATC 4 cut(s) 327, 561, 868, 929
BmuI ACTGGG 1 cut(s) 509
BpiI GAAGAC 1 cut(s) 1008
BpuMI CCSGG 1 cut(s) 360
Bsa29I ATCGAT 1 cut(s) 892
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 551
Bsc4I CCNNNNNNNGG 2 cut(s) 616, 962
Bse1I ACTGG 2 cut(s) 268, 504
Bse3DI GCAATG 1 cut(s) 738
Bse8I GATNNNNATC 1 cut(s) 551
BseBI CCWGG 1 cut(s) 229
BseCI ATCGAT 1 cut(s) 892
BseGI GGATG 3 cut(s) 256, 940, 944
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 2 cut(s) 616, 962
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 3 cut(s) 518, 770, 876
BseNI ACTGG 2 cut(s) 268, 504
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 2 cut(s) 318, 749
BseYI CCCAGC 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 603
BshFI GGCC 5 cut(s) 35, 232, 413, 1035, 1105
BshNI GGYRCC 1 cut(s) 720
BshVI ATCGAT 1 cut(s) 892
BsiEI CGRYCG 1 cut(s) 603
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 2 cut(s) 167, 275
BslI CCNNNNNNNGG 2 cut(s) 616, 962
BsmAI GTCTC 1 cut(s) 730
BsmFI GGGAC 2 cut(s) 167, 275
BsnI GGCC 5 cut(s) 35, 232, 413, 1035, 1105
Bsp120I GGGCCC 1 cut(s) 411
Bsp1286I GDGCHC 2 cut(s) 415, 609
Bsp143I GATC 5 cut(s) 79, 88, 383, 710, 889
BspACI CCGC 1 cut(s) 407
BspANI GGCC 5 cut(s) 35, 232, 413, 1035, 1105
BspCNI CTCAG 3 cut(s) 519, 771, 877
BspDI ATCGAT 1 cut(s) 892
BspLI GGNNCC 5 cut(s) 385, 412, 413, 722, 1087
BspMI ACCTGC 1 cut(s) 736
BspPI GGATC 4 cut(s) 378, 391, 718, 897
BspT107I GGYRCC 1 cut(s) 720
BsrBI CCGCTC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 738
BsrI ACTGG 2 cut(s) 268, 504
BssMI GATC 5 cut(s) 79, 88, 383, 710, 889
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 6 cut(s) 71, 101, 205, 655, 957, 987
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 6 cut(s) 11, 318, 527, 676, 779, 885
BstF5I GGATG 3 cut(s) 256, 940, 944
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 5 cut(s) 82, 91, 386, 713, 892
BstMAI GTCTC 1 cut(s) 730
BstMBI GATC 5 cut(s) 79, 88, 383, 710, 889
BstMCI CGRYCG 1 cut(s) 603
BstMWI GCNNNNNNNGC 5 cut(s) 314, 323, 337, 558, 1129
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 2 cut(s) 227, 358
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 318, 749
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 2 cut(s) 383, 710
BstXI CCANNNNNNTGG 1 cut(s) 263
BstYI RGATCY 2 cut(s) 383, 710
Bsu15I ATCGAT 1 cut(s) 892
BsuRI GGCC 5 cut(s) 35, 232, 413, 1035, 1105
BsuTUI ATCGAT 1 cut(s) 892
BtgZI GCGATG 1 cut(s) 291
BtsCI GGATG 3 cut(s) 256, 940, 944
BtsIMutI CAGTG 1 cut(s) 651
BveI ACCTGC 1 cut(s) 736
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 2 cut(s) 437, 499
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 5 cut(s) 362, 411, 412, 953, 1103
ClaI ATCGAT 1 cut(s) 892
CseI GACGC 1 cut(s) 314
Csp6I GTAC 5 cut(s) 94, 105, 541, 948, 958
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 2 cut(s) 83, 368
CviQI GTAC 5 cut(s) 94, 105, 541, 948, 958
DdeI CTNAG 6 cut(s) 11, 318, 527, 676, 779, 885
DpnI GATC 5 cut(s) 81, 90, 385, 712, 891
DpnII GATC 5 cut(s) 79, 88, 383, 710, 889
EaeI YGGCCR 3 cut(s) 33, 230, 1033
Eco24I GRGCYC 2 cut(s) 415, 609
Eco47I GGWCC 2 cut(s) 362, 953
Eco57I CTGAAG 1 cut(s) 777
EcoO109I RGGNCCY 3 cut(s) 411, 412, 1103
EcoRI GAATTC 1 cut(s) 522
EcoRII CCWGG 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 415, 609
FaeI CATG 2 cut(s) 86, 371
FaqI GGGAC 2 cut(s) 167, 275
FatI CATG 2 cut(s) 82, 367
FauI CCCGC 1 cut(s) 400
FauNDI CATATG 2 cut(s) 235, 913
FbaI TGATCA 1 cut(s) 79
Fnu4HI GCNGC 2 cut(s) 332, 763
FokI GGATG 3 cut(s) 243, 947, 951
FriOI GRGCYC 2 cut(s) 415, 609
Fsp4HI GCNGC 2 cut(s) 332, 763
FspBI CTAG 2 cut(s) 108, 809
GlaI GCGC 1 cut(s) 138
GluI GCNGC 2 cut(s) 332, 763
GsaI CCCAGC 1 cut(s) 613
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 5 cut(s) 35, 232, 413, 1035, 1105
HapII CCGG 1 cut(s) 360
HgaI GACGC 1 cut(s) 314
HhaI GCGC 1 cut(s) 139
Hin1II CATG 2 cut(s) 86, 371
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 3 cut(s) 155, 270, 849
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 150
Hpy166II GTNNAC 4 cut(s) 25, 365, 541, 921
Hpy188I TCNGA 5 cut(s) 528, 557, 702, 780, 934
Hpy188III TCNNGA 3 cut(s) 77, 634, 846
Hpy8I GTNNAC 4 cut(s) 25, 365, 541, 921
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 5 cut(s) 67, 71, 678, 752, 764
HpyCH4III ACNGT 6 cut(s) 71, 101, 205, 655, 957, 987
HpyCH4IV ACGT 1 cut(s) 27
HpyF10VI GCNNNNNNNGC 5 cut(s) 314, 323, 337, 558, 1129
HpyF3I CTNAG 6 cut(s) 11, 318, 527, 676, 779, 885
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 86, 371
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 5 cut(s) 79, 88, 383, 710, 889
LmnI GCTCC 1 cut(s) 404
Lsp1109I GCAGC 2 cut(s) 318, 749
LweI GCATC 4 cut(s) 327, 561, 868, 929
MaeI CTAG 2 cut(s) 108, 809
MaeII ACGT 1 cut(s) 27
MaeIII GTNAC 4 cut(s) 199, 475, 641, 751
MalI GATC 5 cut(s) 81, 90, 385, 712, 891
MbiI CCGCTC 1 cut(s) 407
MboI GATC 5 cut(s) 79, 88, 383, 710, 889
MboII GAAGA 4 cut(s) 221, 241, 279, 1013
MflI RGATCY 2 cut(s) 383, 710
MhlI GDGCHC 2 cut(s) 415, 609
MlsI TGGCCA 3 cut(s) 35, 232, 1035
MluCI AATT 5 cut(s) 51, 189, 522, 690, 992
MluNI TGGCCA 3 cut(s) 35, 232, 1035
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 2 cut(s) 411, 912
MnlI CCTC 6 cut(s) 160, 551, 610, 674, 830, 880
Mox20I TGGCCA 3 cut(s) 35, 232, 1035
MroXI GAANNNNTTC 1 cut(s) 774
MscI TGGCCA 3 cut(s) 35, 232, 1035
MseI TTAA 2 cut(s) 867, 900
Msp20I TGGCCA 3 cut(s) 35, 232, 1035
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 229, 360
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 5 cut(s) 314, 323, 337, 558, 1129
NciI CCSGG 1 cut(s) 360
NdeI CATATG 2 cut(s) 235, 913
NdeII GATC 5 cut(s) 79, 88, 383, 710, 889
NlaIII CATG 2 cut(s) 86, 371
NlaIV GGNNCC 5 cut(s) 385, 412, 413, 722, 1087
NmuCI GTSAC 1 cut(s) 475
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 2 cut(s) 270, 849
PkrI GCNGC 2 cut(s) 333, 764
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 5 cut(s) 385, 412, 413, 722, 1087
PspOMI GGGCCC 1 cut(s) 411
PspPI GGNCC 5 cut(s) 362, 411, 412, 953, 1103
PsrI GAACNNNNNNTAC 2 cut(s) 1078, 1110
PstNI CAGNNNCTG 2 cut(s) 437, 499
PsuI RGATCY 2 cut(s) 383, 710
RsaI GTAC 5 cut(s) 95, 106, 542, 949, 959
RsaNI GTAC 5 cut(s) 94, 105, 541, 948, 958
SaqAI TTAA 2 cut(s) 867, 900
SatI GCNGC 2 cut(s) 332, 763
Sau3AI GATC 5 cut(s) 79, 88, 383, 710, 889
Sau96I GGNCC 5 cut(s) 362, 411, 412, 953, 1103
ScaI AGTACT 2 cut(s) 95, 106
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 229, 360
SduI GDGCHC 2 cut(s) 415, 609
SfaNI GCATC 4 cut(s) 327, 561, 868, 929
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 2 cut(s) 362, 953
SpeI ACTAGT 1 cut(s) 107
Sse9I AATT 5 cut(s) 51, 189, 522, 690, 992
SsiI CCGC 1 cut(s) 407
SspI AATATT 3 cut(s) 744, 857, 864
SspMI CTAG 2 cut(s) 108, 809
StyD4I CCNGG 2 cut(s) 227, 358
TaaI ACNGT 6 cut(s) 71, 101, 205, 655, 957, 987
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 303, 892, 1040
TaqII GACCGA 1 cut(s) 617
TasI AATT 5 cut(s) 51, 189, 522, 690, 992
TatI WGTACW 3 cut(s) 93, 104, 540
TfiI GAWTC 2 cut(s) 270, 849
Tru1I TTAA 2 cut(s) 867, 900
Tru9I TTAA 2 cut(s) 867, 900
TscAI CASTG 1 cut(s) 658
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 331, 762
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 2 cut(s) 362, 953
XapI RAATTY 1 cut(s) 522
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 1017
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 2 cut(s) 108, 809
ZrmI AGTACT 2 cut(s) 95, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.